I'm having trouble building the hmatrix library on OS X Lion. Looking at the .cabal file, it requires the gsl library, so I installed it with macports. The .a files are in /opt/local/lib and the .h files are in /opt/local/include/gsl
As suggested here I changed the built-type from Custom to Simple. (without that change I get a similar error).
When I use cabal configure I get the following output:
* Missing C library: gsl
This problem can usually be solved by installing the system package that
provides this library (you may need the "-dev" version). If the library is
already installed but in a non-standard location then you can use the flags
--extra-include-dirs= and --extra-lib-dirs= to specify where it is.
So I tried cabal --extra-include-dirs=/opt/local/include --extra-lib-dirs=/opt/local/lib configure, but I still get the same error. I can compile and link a c program that includes gsl. What files is cabal looking for? If I have the right files, how do I tell it how to find them?
libgsl.a is a universal binary:
$ file /opt/local/lib/libgsl.a
/opt/local/lib/libgsl.a: Mach-O universal binary with 2 architectures
/opt/local/lib/libgsl.a (for architecture x86_64): current ar archive random library
/opt/local/lib/libgsl.a (for architecture i386): current ar archive random library
ghc looks like it's 64-bit:
$ ghc --info
[("Project name","The Glorious Glasgow Haskell Compilation System")
,("GCC extra via C opts"," -fwrapv")
,("C compiler command","/usr/bin/llvm-gcc")
,("C compiler flags"," -m64 -fno-stack-protector -m64")
,("ar command","/usr/bin/ar")
,("ar flags","clqs")
,("ar supports at file","NO")
,("touch command","touch")
,("dllwrap command","/bin/false")
,("windres command","/bin/false")
,("perl command","/usr/bin/perl")
,("target os","OSDarwin")
,("target arch","ArchX86_64")
,("target word size","8")
,("target has GNU nonexec stack","False")
,("target has subsections via symbols","True")
,("Project version","7.4.2")
,("Booter version","7.4.2")
,("Stage","2")
,("Build platform","x86_64-apple-darwin")
,("Host platform","x86_64-apple-darwin")
,("Target platform","x86_64-apple-darwin")
,("Have interpreter","YES")
,("Object splitting supported","NO")
,("Have native code generator","YES")
,("Support SMP","YES")
,("Unregisterised","NO")
,("Tables next to code","YES")
,("RTS ways","l debug thr thr_debug thr_l thr_p dyn debug_dyn thr_dyn thr_debug_dyn")
,("Leading underscore","YES")
,("Debug on","False")
,("LibDir","/usr/local/Cellar/ghc/7.4.2/lib/ghc-7.4.2")
,("Global Package DB","/usr/local/Cellar/ghc/7.4.2/lib/ghc-7.4.2/package.conf.d")
,("Gcc Linker flags","[\"-m64\"]")
,("Ld Linker flags","[\"-arch\",\"x86_64\"]")
]
As an alternative to mac-ports you can use the nix package manager for mac. It does a pretty good job of taking care of the c dependancies for for the libraries available through it. In general I have been more happy with it then any other package manager on mac.
Unfortunately mac(darwin) unlike for linux does not have as many binaries available through nix so installing ghc often means waiting for it to compile.
The commands to install ghc and hmatrix after installation of nix are:
nix-env -iA nixpkgs-unstable.haskellPackages.ghc
nix-env -iA nixpkgs-unstable.haskellPackages.hmatrix
All of the needed dependencies will be taken care of for you.
I just tried it on my macbook pro and hmatrix seems to be working correctly in ghci after trying commands from the first few pages of the tutorial.
I'm not a mac person, but it really sounds like you haven't installed the "-dev" version. For a mac, I suspect you need to install gsl-devel in addition to gsl. If the problem persists, verify that you have libgsl0-dev on your library path.
Related
I'm looking for a cross compiler to compile for linux under the msys2 environment.
I'm looking for somethink like x86_64-w64-linux-gcc. But I can't find it.
Which package I have to install?
You'll need a VM or a Linux machine to test the resulting binaries, so I'd just compile on one in the first place.
But cross-compilation should be possible too:
Boot up your favorite Linux distribution in a VM.
Install the libraries you want to have. Install g++ to get libstdc++, and possibly other basic libraries.
Copy the root directory / from the VM to the Windows machine.
You only need headers and libraries, not everything. You'll have to experiment to know what directories can or can't be safely removed.
Install Clang on the Windows machine. Installing LLD is also a good idea (it's a separate package in MSYS2; or, if you're using the official Clang binaries, it's bundled with them).
We're using Clang, because it's inherently a cross-compiler, i.e. doesn't require separate binaries to target a different platform, unlike GCC.
Compile with Clang with --target=x86_64-pc-linux-gnu --sysroot=path/to/root/directory.
-fuse-ld=lld is probably a good idea as well.
The string x86_64-pc-linux-gnu was obtained by running clang++ --version on a Linux machine.
You might need a few more flags, but this should be a good starting point.
I'd like to compile a Haskell project with a .cabal file under windows.
I have installed the Haskell Platform and Cygwin. One of the dependancies is time, which fail to build during the cabal install command.
The error message is the following:
checking for gcc... C:\PROGRA~1\HASKELL~1\826561~1.1\mingw\bin\gcc.exe
checking if the C compiler is working... no
configure error: C compiler cannot create executable
So I downloaded another gcc withing Cygwin that, I suppose, will work better.
However, this other question mention that the Haskell platform now uses MinGW rater than Cygwin to run GNU software.
I changed in the cabal configure file the location of gcc, but I still get the same error message (but with the new location of gcc).
So I'm a bit confused here: what is exactly the problem with gcc? Do you have any inputs on how I could continue the building of my software?
Fixed (partially) by using Stack. Building is failing but for another reason, so I'll ask another question.
Thanks again.
I'm trying to use a cgo library on Windows, namely github.com/mattn/go-sqlite3
I use Cygwin64 and installed with all "Development" packages, so gcc is availabe.
But running go get github.com/mattn/go-sqlite3 results in:
/usr/lib/gcc/x86_64-pc-cygwin/5.3.0/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lmingwex
/usr/lib/gcc/x86_64-pc-cygwin/5.3.0/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lmingw32
If I search for "mingwex" and "mingw32" in the Cygwin installer, I get no results. Am I looking for the wrong names or are they not available on 64 bit systems?
Or is there a better way to use the library on Windows?
Note that the README states that
However, if you install go-sqlite3 with go install
github.com/mattn/go-sqlite3, you don't need gcc to build your app
anymore
but I get the same error message if I use go install.
$ go version
go version go1.6.2 windows/amd64
What finally worked for me (instead of Cygwin) is to download TDM MinGW-w64 from http://tdm-gcc.tdragon.net/download and set the PATH such that gcc from C:\TDM-GCC-64\bin is used.
You can also install package mingw64-i686-gcc-core from Cygwin.
The binary will be /usr/bin/i686-w64-mingw32-gcc.exe so you probably need to copy it as /usr/bin/gcc.exe.
I have encountered the same issue as well. It seems to me that cygwin is not fully compatible with cgo. Instead, I have used https://mingw-w64.org.
From the cgo documentation https://github.com/golang/go/wiki/cgo:
In order to use cgo on Windows, you'll also need to first install a gcc compiler (for instance, mingw-w64) and have gcc.exe (etc.) in your PATH environment variable before compiling with cgo will work.
I've done everything, and it's payed off.
Trying to compile a mex file from MATLAB using the Windows 7.1 SDK.
~ I've created an compiled my C source code on GCC
~ I've created a MEX file that links and compiles fine via GCC on both Linux and OS X. Does not crash MATLAB, gateway function works fine
~ After much confusion, I switched my dev platform form 64-bit to x86 Win7
~ I've found .dll built files, but they do not link. Linking libs in MATLAB using MATLAB's linker flags will default to .lib, so...
~ I've found--after much googling--simple, pre-compiled x86 GSL .lib's and source files and linked them with MATLAB, eliminating any gsl_blas.h-and-it's-dependencies unrecognized external symbol errors
~ I've re-written every single variable declaration in my source code such that it is C89 standard compatible
~ I've set linker flags appropriately to avoid LIBCMT and any other LIB conflicts
~ I've installed the 2010 and 2012 VC C Runtime libraries
~ I've checked to make sure I have msvcrt.dll and msvcp60.dll in my System files
~ I've followed multiple tutorials online on how supposedly link everything together, most of which had nothing broken links or un-replicable results. I didn't find much to go off of for Cygwin or MinGW.
~ I've tried using the Lcc-win32 2.4.1 compiler
If I was doing basic matrix and vector operations, I'd be set, but unfortunately the various decomposition routines I'm utilizing require parts from the cblas library, which I linked as well, but I get ~30 errors all reporting the same thing...
cblas.lib(ctrsv.obj) : error LNK2001: unresolved external symbol __libm_sse2_sqrt_precise
Here's my MATLAB command.
mex -largeArrayDims -IC:\gsl\include -LC:\gsl\lib -lgsl -lcblas LINKFLAGS="$LINKFLAGS /NODEFAULTLIB:libcmt.lib" file1.c file2.c
So, out of options and frustrated out of my mind, I (naturally) come to stack overflow. Anyone have any idea how to solve this one? The only thing I've foudn on google points to wineHQ errors, not very helpful.
And, if possible, I'd rather not try to compile first on VS201X. I have access to whatever version I need, if necessary, but to me that just seems like a redundant step. Maybe I'm spoiled with Unix-based file system management and linking, though.
It's easy to compile the GSL library under MinGW, in fact the process of compiling from sources is exactly identical to that in Linux. Here are the steps I took:
Setup MinGW for Windows. I am using MinGW-w64 but there is also the popular TDM-GCC distribution which comes with a friendly web-installer.
Obtain GSL sources, and extract the tarball (gsl-1.16.tar.gz is the latest as of now)
Compile as usual, I've used the following commands:
$ ./configure --host=x86_64-w64-mingw32 --prefix=/mingw/local --enable-shared --enable-static
$ make
$ make install
It should take several minutes to finish. Maybe you can enable parallel builds to speed up compilation (make -j)
You'll end up with the necessary files installed in /mingw/local with the usual structure underneath (bin, lib, include).
Finally you can compile an example program with:
$ export PATH=/mingw/local:$PATH
$ gcc `gsl-config --cflags` -o main main.c `gsl-config --libs`
Of course if you prefer using Visual C++ as compiler, people out there have prepared solutions to build GSL using Visual Studio (either manually created project files, or using a build system like CMake and the like). See this question for such projects.
A third option is using Cygwin.
I have a C++ shared library being called from my Python program. The C++ lib is compiled with HDF5 which I installed using homebrew on OS X, so it resides in /usr/local/lib. Now the problem is that I also have PyTables installed, which includes an older version of libhdf5, installed somewhere in /Library/Frameworks/EPD64.framework/Versions/Current/...
I can compile and link my library just fine, and otool -L indeed points to /usr/local/lib/libhdf5.dylib. However, when I try to run it from Python, there is a version mismatch error. Somehow the runtime linker is loading the older hdf5 library instead.
One workaround is to build hdf5 as a static library instead, but I'd like to find a neater solution - how can I persuade the runtime linker to use the newer library? I already tried setting DYLD_LIBRARY_PATH but that just broke everything else (Python and MacVim wouldn't start).
Can you provide more info? I have a few alternatives (and questions).
If I understood correctly, you have a library that uses lib_ver_a.dyld and pyTables that uses lib_ver_b.dyld. I.e. the same library but different version.
You could either:
Compile your library to use the same version as pyTables (DYLD_LIB... while you compile) and run your program with pyTables library: DYLD_LIBRARY_PATH=/correct/path/lib python myprog.py
Upgrade your xcode (which version you have? also which osx version?). This upgrades your libraries and pyTables (be careful, newest is not necessary the most stable)
You should also check which python you are calling (a custom one or apple one).
There is also a possibility to define a specific dyld while linking (Do you use gcc or ld for linking? I might miss some options here):
gcc /path/lib1.dyld myLib.c -o myLib.o
This way your library is linked to certain version of the library (caution! I don't remember the exact details, but I can dig them out).
I hope this helps.
br,
Juha