Imagine you have N distinct people and that you have a record of where these people are, exactly M of these records to be exact.
For example
1,50,299
1,2,3,4,5,50,287
1,50,299
So you can see that 'person 1' is at the same place with 'person 50' three times. Here M = 3 obviously since there's only 3 lines. My question is given M of these lines, and a threshold value (i.e person A and B have been at the same place more than threshold times), what do you suggest the most efficient way of returning these co-occurrences?
So far I've built an N by N table, and looped through each row, incrementing table(N,M) every time N co occurs with M in a row. Obviously this is an awful approach and takes 0(n^2) to O(n^3) depending on how you implent. Any tips would be appreciated!
There is no need to create the table. Just create a hash/dictionary/whatever your language calls it. Then in pseudocode:
answer = []
for S in sets:
for (i, j) in pairs from S:
count[(i,j)]++
if threshold == count[(i,j)]:
answer.append((i,j))
If you have M sets of size of size K the running time will be O(M*K^2).
If you want you can actually keep the list of intersecting sets in a data structure parallel to count without changing the big-O.
Furthermore the same algorithm can be readily implemented in a distributed way using a map-reduce. For the count you just have to emit a key of (i, j) and a value of 1. In the reduce you count them. Actually generating the list of sets is similar.
The known concept for your case is Market Basket analysis. In this context, there are different algorithms. For example Apriori algorithm can be using for your case in a specific case for sets of size 2.
Moreover, in these cases to finding association rules with specific supports and conditions (which for your case is the threshold value) using from LSH and min-hash too.
you could use probability to speed it up, e.g. only check each pair with 1/50 probability. That will give you a 50x speed up. Then double check any pairs that make it close enough to 1/50th of M.
To double check any pairs, you can either go through the whole list again, or you could double check more efficiently if you do some clever kind of reverse indexing as you go. e.g. encode each persons row indices into 64 bit integers, you could use binary search / merge sort type techniques to see which 64 bit integers to compare, and use bit operations to compare 64 bit integers for matches. Other things to look up could be reverse indexing, binary indexed range trees / fenwick trees.
I'm working of matrices having rank >1. It is possible to reduce the rank of a matrix to rank=1 substituing some values to zeros?
Rank in a matrix refers to how many of the column vectors are independent and non-zero (Or row vectors, but I was taught to always use column vectors). So, if you're willing to lose a lot of the information about the transformation your matrix is defining, you could create a matrix that's just the first non-zero column of your matrix, and everything else set to zero. Guaranteed to be rank 1.
However, that loses a whole lot of information about the transformation. Perhaps a more useful thing to do would be project your matrix onto a space of size 1x1. There are ways to do this in such a way that can create an injection from your matrix to the new space, guaranteeing that no two matrices produce an equivalent result. The first one that comes to mind is:
Let A be an n x m matrix
Let {P_i} be the ith prime number.
Let F(A) = {sum from i to (n * m)} {P_i} ^ (A_(i div n),(i mod m))
While this generates a single number, you can think of a single number as a 1 x 1 matrix, which, if non-zero, has rank 1.
All that being said, rank 1 matrices are kinda boring and you can do cooler stuff with matrices if you keep it at rank != 1. In particular, if you have an n x n matrix with rank n, a whole world of possibility opens up. It really depends on what you want to use these matrices for.
You might want to look at the singular value decomposition, which can be used to write your matrix as a sum of weighted outer products (see here). Choosing only the highest-weighted component of this sum will give you the closest rank-1 approximation to the decomposed matrix.
Most common linear algebra libraries (Eigen, OpenCV, NumPy) have an SVD implementation.
I'm working on a problem that requires an array (dA[j], j=-N..N) to be calculated from the values of another array (A[i], i=-N..N) based on a conservation of momentum rule (x+y=z+j). This means that for a given index j for all the valid combinations of (x,y,z) I calculate A[x]A[y]A[z]. dA[j] is equal to the sum of these values.
I'm currently precomputing the valid indices for each dA[j] by looping x=-N...+N,y=-N...+N and calculating z=x+y-j and storing the indices if abs(z) <= N.
Is there a more efficient method of computing this?
The reason I ask is that in future I'd like to also be able to efficiently find for each dA[j] all the terms that have a specific A[i]. Essentially to be able to compute the Jacobian of dA[j] with respect to dA[i].
Update
For the sake of completeness I figured out a way of doing this without any if statements: if you parametrize the equation x+y=z+j given that j is a constant you get the equation for a plane. The constraint that x,y,z need to be integers between -N..N create boundaries on this plane. The points that define this boundary are functions of N and j. So all you have to do is loop over your parametrized variables (s,t) within these boundaries and you'll generate all the valid points by using the vectors defined by the plane (s*u + t*v + j*[0,0,1]).
For example, if you choose u=[1,0,-1] and v=[0,1,1] all the valid solutions for every value of j are bounded by a 6 sided polygon with points (-N,-N),(-N,-j),(j,N),(N,N),(N,-j), and (j,-N).
So for each j, you go through all (2N)^2 combinations to find the correct x's and y's such that x+y= z+j; the running time of your application (per j) is O(N^2). I don't think your current idea is bad (and after playing with some pseudocode for this, I couldn't improve it significantly). I would like to note that once you've picked a j and a z, there is at most 2N choices for x's and y's. So overall, the best algorithm would still complete in O(N^2).
But consider the following improvement by a factor of 2 (for the overall program, not per j): if z+j= x+y, then (-z)+(-j)= (-x)+(-y) also.
Given a
we first define two real-valued functions and as follows:
and we also define a value m(X) for each matrix X as follows:
Now given an , we have many regions of G, denoted as . Here, a region of G is formed by a submatrix of G that is randomly chosen from some columns and some rows of G. And our problem is to compute as fewer operations as possible. Is there any methods like building hash table, or sorting to get the results faster? Thanks!
========================
For example, if G={{1,2,3},{4,5,6},{7,8,9}}, then
G_1 could be {{1,2},{7,8}}
G_2 could be {{1,3},{4,6},{7,9}}
G_3 could be {{5,6},{8,9}}
=======================
Currently, for each G_i we need mxn comparisons to compute m(G_i). Thus, for m(G_1),...,m(G_r) there should be rxmxn comparisons. However, I can notice that G_i and G_j maybe overlapped, so there would be some other approach that is more effective. Any attention would be highly appreciated!
Depending on how many times the min/max type data is needed, you could consider a matrix that holds min/max information in-between the matrix values, i.e. in the interstices between values.. Thus, for your example G={{1,2,3},{4,5,6},{7,8,9}} we would define a relationship matrix R sized ((mxn),(mxn),(mxn)) and having values from the set C = {-1 = less than, 0 = equals and 1 = greater than}.
R would have nine relationship pairs (n,1), (n,2) to (n,9) where each value would be a member of C. Note (n,n is defined and will equal 0). Thus, R[4,,) = (1,1,1,0,-1,-1,-1,-1,-1). Now consider any of your subsets G_1 ..., Knowing the positional relationships of a subset's members will give you offsets into R which will resolve to indexes into each R(N,,) which will return the desired relationship information directly without comparisons.
You, of course, will have to decide if the overhead in space and calculations to build R exceeds the cost of just computing what you need each time it's needed. Certain optimizations including realization that the R matrix is reflected along the major diagonal and that you could declare "equals" to be called, say, less than (meaning C has only two values) are available. Depending on the original matrix G, other optimizations can be had if it is know that a row or column is sorted.
And since some computers (mainframes, supercomputers, etc) store data into RAM in column-major order, store your dataset so that it fills in with the rows and columns transposed thus allowing column-to-column type operations (vector calculations) to actually favor the columns. Check your architecture.
Given an n×n matrix of real numbers. You are allowed to erase any number (from 0 to n) of rows and any number (from 0 to n) of columns, and after that the sum of the remaining entries is computed. Come up with an algorithm which finds out which rows and columns to erase in order to maximize that sum.
The problem is NP-hard. (So you should not expect a polynomial-time algorithm for solving this problem. There could still be (non-polynomial time) algorithms that are slightly better than brute-force, though.) The idea behind the proof of NP-hardness is that if we could solve this problem, then we could solve the the clique problem in a general graph. (The maximum-clique problem is to find the largest set of pairwise connected vertices in a graph.)
Specifically, given any graph with n vertices, let's form the matrix A with entries a[i][j] as follows:
a[i][j] = 1 for i == j (the diagonal entries)
a[i][j] = 0 if the edge (i,j) is present in the graph (and i≠j)
a[i][j] = -n-1 if the edge (i,j) is not present in the graph.
Now suppose we solve the problem of removing some rows and columns (or equivalently, keeping some rows and columns) so that the sum of the entries in the matrix is maximized. Then the answer gives the maximum clique in the graph:
Claim: In any optimal solution, there is no row i and column j kept for which the edge (i,j) is not present in the graph. Proof: Since a[i][j] = -n-1 and the sum of all the positive entries is at most n, picking (i,j) would lead to a negative sum. (Note that deleting all rows and columns would give a better sum, of 0.)
Claim: In (some) optimal solution, the set of rows and columns kept is the same. This is because starting with any optimal solution, we can simply remove all rows i for which column i has not been kept, and vice-versa. Note that since the only positive entries are the diagonal ones, we do not decrease the sum (and by the previous claim, we do not increase it either).
All of which means that if the graph has a maximum clique of size k, then our matrix problem has a solution with sum k, and vice-versa. Therefore, if we could solve our initial problem in polynomial time, then the clique problem would also be solved in polynomial time. This proves that the initial problem is NP-hard. (Actually, it is easy to see that the decision version of the initial problem — is there a way of removing some rows and columns so that the sum is at least k — is in NP, so the (decision version of the) initial problem is actually NP-complete.)
Well the brute force method goes something like this:
For n rows there are 2n subsets.
For n columns there are 2n subsets.
For an n x n matrix there are 22n subsets.
0 elements is a valid subset but obviously if you have 0 rows or 0 columns the total is 0 so there are really 22n-2+1 subsets but that's no different.
So you can work out each combination by brute force as an O(an) algorithm. Fast. :)
It would be quicker to work out what the maximum possible value is and you do that by adding up all the positive numbers in the grid. If those numbers happen to form a valid sub-matrix (meaning you can create that set by removing rows and/or columns) then there's your answer.
Implicit in this is that if none of the numbers are negative then the complete matrix is, by definition, the answer.
Also, knowing what the highest possible maximum is possibly allows you to shortcut the brute force evaluation since if you get any combination equal to that maximum then that is your answer and you can stop checking.
Also if all the numbers are non-positive, the answer is the maximum value as you can reduce the matrix to a 1 x 1 matrix with that 1 value in it, by definition.
Here's an idea: construct 2n-1 n x m matrices where 1 <= m <= n. Process them one after the other. For each n x m matrix you can calculate:
The highest possible maximum sum (as per above); and
Whether no numbers are positive allowing you to shortcut the answer.
if (1) is below the currently calculate highest maximum sum then you can discard this n x m matrix. If (2) is true then you just need a simple comparison to the current highest maximum sum.
This is generally referred to as a pruning technique.
What's more you can start by saying that the highest number in the n x n matrix is the starting highest maximum sum since obviously it can be a 1 x 1 matrix.
I'm sure you could tweak this into a (slightly more) efficient recursive tree-based search algorithm with the above tests effectively allowing you to eliminate (hopefully many) unnecessary searches.
We can improve on Cletus's generalized brute-force solution by modelling this as a directed graph. The initial matrix is the start node of the graph; its leaves are all the matrices missing one row or column, and so forth. It's a graph rather than a tree, because the node for the matrix without both the first column and row will have two parents - the nodes with just the first column or row missing.
We can optimize our solution by turning the graph into a tree: There's never any point exploring a submatrix with a column or row deleted that comes before the one we deleted to get to the current node, as that submatrix will be arrived at anyway.
This is still a brute-force search, of course - but we've eliminated the duplicate cases where we remove the same rows in different orders.
Here's an example implementation in Python:
def maximize_sum(m):
frontier = [(m, 0, False)]
best = None
best_score = 0
while frontier:
current, startidx, cols_done = frontier.pop()
score = matrix_sum(current)
if score > best_score or not best:
best = current
best_score = score
w, h = matrix_size(current)
if not cols_done:
for x in range(startidx, w):
frontier.append((delete_column(current, x), x, False))
startidx = 0
for y in range(startidx, h):
frontier.append((delete_row(current, y), y, True))
return best_score, best
And here's the output on 280Z28's example matrix:
>>> m = ((1, 1, 3), (1, -89, 101), (1, 102, -99))
>>> maximize_sum(m)
(106, [(1, 3), (1, 101)])
Since nobody asked for an efficient algorithm, use brute force: generate every possible matrix that can be created by removing rows and/or columns from the original matrix, choose the best one. A slightly more efficent version, which most likely can be proved to still be correct, is to generate only those variants where the removed rows and columns contain at least one negative value.
To try it in a simple way:
We need the valid subset of the set of entries {A00, A01, A02, ..., A0n, A10, ...,Ann} which max. sum.
First compute all subsets (the power set).
A valid subset is a member of the power set that for each two contained entries Aij and A(i+x)(j+y), contains also the elements A(i+x)j and Ai(j+y) (which are the remaining corners of the rectangle spanned by Aij and A(i+x)(j+y)).
Aij ...
. .
. .
... A(i+x)(j+y)
By that you can eliminate the invalid ones from the power set and find the one with the biggest sum in the remaining.
I'm sure it can be improved by improving an algorithm for power set generation in order to generate only valid subsets and by that avoiding step 2 (adjusting the power set).
I think there are some angles of attack that might improve upon brute force.
memoization, since there are many distinct sequences of edits that will arrive at the same submatrix.
dynamic programming. Because the search space of matrices is highly redundant, my intuition is that there would be a DP formulation that can save a lot of repeated work
I think there's a heuristic approach, but I can't quite nail it down:
if there's one negative number, you can either take the matrix as it is, remove the column of the negative number, or remove its row; I don't think any other "moves" result in a higher sum. For two negative numbers, your options are: remove neither, remove one, remove the other, or remove both (where the act of removal is either by axing the row or the column).
Now suppose the matrix has only one positive number and the rest are all <=0. You clearly want to remove everything but the positive entry. For a matrix with only 2 positive entries and the rest <= 0, the options are: do nothing, whittle down to one, whittle down to the other, or whittle down to both (resulting in a 1x2, 2x1, or 2x2 matrix).
In general this last option falls apart (imagine a matrix with 50 positives & 50 negatives), but depending on your data (few negatives or few positives) it could provide a shortcut.
Create an n-by-1 vector RowSums, and an n-by-1 vector ColumnSums. Initialize them to the row and column sums of the original matrix. O(n²)
If any row or column has a negative sum, remove edit: the one with the minimum such and update the sums in the other direction to reflect their new values. O(n)
Stop when no row or column has a sum less than zero.
This is an iterative variation improving on another answer. It operates in O(n²) time, but fails for some cases mentioned in other answers, which is the complexity limit for this problem (there are n² entries in the matrix, and to even find the minimum you have to examine each cell once).
Edit: The following matrix has no negative rows or columns, but is also not maximized, and my algorithm doesn't catch it.
1 1 3 goal 1 3
1 -89 101 ===> 1 101
1 102 -99
The following matrix does have negative rows and columns, but my algorithm selects the wrong ones for removal.
-5 1 -5 goal 1
1 1 1 ===> 1
-10 2 -10 2
mine
===> 1 1 1
Compute the sum of each row and column. This can be done in O(m) (where m = n^2)
While there are rows or columns that sum to negative remove the row or column that has the lowest sum that is less than zero. Then recompute the sum of each row/column.
The general idea is that as long as there is a row or a column that sums to nevative, removing it will result in a greater overall value. You need to remove them one at a time and recompute because in removing that one row/column you are affecting the sums of the other rows/columns and they may or may not have negative sums any more.
This will produce an optimally maximum result. Runtime is O(mn) or O(n^3)
I cannot really produce an algorithm on top of my head, but to me it 'smells' like dynamic programming, if it serves as a start point.
Big Edit: I honestly don't think there's a way to assess a matrix and determine it is maximized, unless it is completely positive.
Maybe it needs to branch, and fathom all elimination paths. You never no when a costly elimination will enable a number of better eliminations later. We can short circuit if it's found the theoretical maximum, but other than any algorithm would have to be able to step forward and back. I've adapted my original solution to achieve this behaviour with recursion.
Double Secret Edit: It would also make great strides to reduce to complexity if each iteration didn't need to find all negative elements. Considering that they don't change much between calls, it makes more sense to just pass their positions to the next iteration.
Takes a matrix, the list of current negative elements in the matrix, and the theoretical maximum of the initial matrix. Returns the matrix's maximum sum and the list of moves required to get there. In my mind move list contains a list of moves denoting the row/column removed from the result of the previous operation.
Ie: r1,r1
Would translate
-1 1 0 1 1 1
-4 1 -4 5 7 1
1 2 4 ===>
5 7 1
Return if sum of matrix is the theoretical maximum
Find the positions of all negative elements unless an empty set was passed in.
Compute sum of matrix and store it along side an empty move list.
For negative each element:
Calculate the sum of that element's row and column.
clone the matrix and eliminate which ever collection has the minimum sum (row/column) from that clone, note that action as a move list.
clone the list of negative elements and remove any that are effected by the action taken in the previous step.
Recursively call this algorithm providing the cloned matrix, the updated negative element list and the theoretical maximum. Append the moves list returned to the move list for the action that produced the matrix passed to the recursive call.
If the returned value of the recursive call is greater than the stored sum, replace it and store the returned move list.
Return the stored sum and move list.
I'm not sure if it's better or worse than the brute force method, but it handles all the test cases now. Even those where the maximum contains negative values.
This is an optimization problem and can be solved approximately by an iterative algorithm based on simulated annealing:
Notation: C is number of columns.
For J iterations:
Look at each column and compute the absolute benefit of toggling it (turn it off if it's currently on or turn it on if it's currently off). That gives you C values, e.g. -3, 1, 4. A greedy deterministic solution would just pick the last action (toggle the last column to get a benefit of 4) because it locally improves the objective. But that might lock us into a local optimum. Instead, we probabilistically pick one of the three actions, with probabilities proportional to the benefits. To do this, transform them into a probability distribution by putting them through a Sigmoid function and normalizing. (Or use exp() instead of sigmoid()?) So for -3, 1, 4 you get 0.05, 0.73, 0.98 from the sigmoid and 0.03, 0.42, 0.56 after normalizing. Now pick the action according to the probability distribution, e.g. toggle the last column with probability 0.56, toggle the second column with probability 0.42, or toggle the first column with the tiny probability 0.03.
Do the same procedure for the rows, resulting in toggling one of the rows.
Iterate for J iterations until convergence.
We may also, in early iterations, make each of these probability distributions more uniform, so that we don't get locked into bad decisions early on. So we'd raise the unnormalized probabilities to a power 1/T, where T is high in early iterations and is slowly decreased until it approaches 0. For example, 0.05, 0.73, 0.98 from above, raised to 1/10 results in 0.74, 0.97, 1.0, which after normalization is 0.27, 0.36, 0.37 (so it's much more uniform than the original 0.05, 0.73, 0.98).
It's clearly NP-Complete (as outlined above). Given this, if I had to propose the best algorithm I could for the problem:
Try some iterations of quadratic integer programming, formulating the problem as: SUM_ij a_ij x_i y_j, with the x_i and y_j variables constrained to be either 0 or 1. For some matrices I think this will find a solution quickly, for the hardest cases it would be no better than brute force (and not much would be).
In parallel (and using most of the CPU), use a approximate search algorithm to generate increasingly better solutions. Simulating Annealing was suggested in another answer, but having done research on similar combinatorial optimisation problems, my experience is that tabu search would find good solutions faster. This is probably close to optimal in terms of wandering between distinct "potentially better" solutions in the shortest time, if you use the trick of incrementally updating the costs of single changes (see my paper "Graph domination, tabu search and the football pool problem").
Use the best solution so far from the second above to steer the first by avoiding searching possibilities that have lower bounds worse than it.
Obviously this isn't guaranteed to find the maximal solution. But, it generally would when this is feasible, and it would provide a very good locally maximal solution otherwise. If someone had a practical situation requiring such optimisation, this is the solution that I'd think would work best.
Stopping at identifying that a problem is likely to be NP-Complete will not look good in a job interview! (Unless the job is in complexity theory, but even then I wouldn't.) You need to suggest good approaches - that is the point of a question like this. To see what you can come up with under pressure, because the real world often requires tackling such things.
yes, it's NP-complete problem.
It's hard to easily find the best sub-matrix,but we can easily to find some better sub-matrix.
Assume that we give m random points in the matrix as "feeds". then let them to automatically extend by the rules like :
if add one new row or column to the feed-matrix, ensure that the sum will be incrementive.
,then we can compare m sub-matrix to find the best one.
Let's say n = 10.
Brute force (all possible sets of rows x all possible sets of columns) takes
2^10 * 2^10 =~ 1,000,000 nodes.
My first approach was to consider this a tree search, and use
the sum of positive entries is an upper bound for every node in the subtree
as a pruning method. Combined with a greedy algorithm to cheaply generate good initial bounds, this yielded answers in about 80,000 nodes on average.
but there is a better way ! i later realised that
Fix some choice of rows X.
Working out the optimal columns for this set of rows is now trivial (keep a column if its sum of its entries in the rows X is positive, otherwise discard it).
So we can just brute force over all possible choices of rows; this takes 2^10 = 1024 nodes.
Adding the pruning method brought this down to 600 nodes on average.
Keeping 'column-sums' and incrementally updating them when traversing the tree of row-sets should allow the calculations (sum of matrix etc) at each node to be O(n) instead of O(n^2). Giving a total complexity of O(n * 2^n)
For slightly less than optimal solution, I think this is a PTIME, PSPACE complexity issue.
The GREEDY algorithm could run as follows:
Load the matrix into memory and compute row totals. After that run the main loop,
1) Delete the smallest row,
2) Subtract the newly omitted values from the old row totals
--> Break when there are no more negative rows.
Point two is a subtle detail: subtracted two rows/columns has time complexity n.
While re-summing all but two columns has n^2 time complexity!
Take each row and each column and compute the sum. For a 2x2 matrix this will be:
2 1
3 -10
Row(0) = 3
Row(1) = -7
Col(0) = 5
Col(1) = -9
Compose a new matrix
Cost to take row Cost to take column
3 5
-7 -9
Take out whatever you need to, then start again.
You just look for negative values on the new matrix. Those are values that actually substract from the overall matrix value. It terminates when there're no more negative "SUMS" values to take out (therefore all columns and rows SUM something to the final result)
In an nxn matrix that would be O(n^2)Log(n) I think
function pruneMatrix(matrix) {
max = -inf;
bestRowBitField = null;
bestColBitField = null;
for(rowBitField=0; rowBitField<2^matrix.height; rowBitField++) {
for (colBitField=0; colBitField<2^matrix.width; colBitField++) {
sum = calcSum(matrix, rowBitField, colBitField);
if (sum > max) {
max = sum;
bestRowBitField = rowBitField;
bestColBitField = colBitField;
}
}
}
return removeFieldsFromMatrix(bestRowBitField, bestColBitField);
}
function calcSumForCombination(matrix, rowBitField, colBitField) {
sum = 0;
for(i=0; i<matrix.height; i++) {
for(j=0; j<matrix.width; j++) {
if (rowBitField & 1<<i && colBitField & 1<<j) {
sum += matrix[i][j];
}
}
}
return sum;
}