Maven update contents of an EAR file - maven

I have an EAR file which I want to update. I do this in Ant by unzipping the EAR and then the JAR, replacing a few files and then repackaging it.
I am trying the same with Maven but with little success and it is also confusing.
So far I have done
1) installing the EAR file in the local maven repository
2) unpack it
3) Replace the file I need
Now I am not sure how to get back the new EAR file. Everything is in the repository.
From my understanding, the EAR plugin packs everything in the ejb, war folders and spits out the ear. But since I directly got the EAR file, I do not have any project per se.
Any suggestions on this?
Also is there a good tutorial on Maven?
Thanks,

You should probably perform the following steps, using a "blank" Maven project and assuming the EAR file is already inside a repository (pushed by another project/tool):
use the dependency:unpack mojo to get and unpack (inside the /target/ folder of your project) the EAR
modify the contents
use the assembly plugin to repack that EAR file
Then do what you need to do with that new EAR file.
A "blank" Maven project would mean that it will not act as a usual project (compile sources, package output...), but rather serve to manipulate existing artifacts through specific plugins.

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If I create the zip file manually and place it in the target folder, Maven is not publishing it to nexus, it only publishes the JAR file automatically created.
So my question is: Is there any way to upload to nexus all the content of the target folder? If not, how do I tell Maven not to create a jar file and create a custom zip instead?
Maven has the deploy:deploy-file goal which can be configured in your pom.xml It can be used to upload arbitrary files, including zips.
You can avoid the creation of a jar if you change <packaging> to pom.

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/usr/local/apache-maven-3.3.3/bin/mvn -B -f /home/jboss/.jenkins/jobs/subco/workspace/pom.xml -B clean prepare-package war:exploded -DskipTests -T 3
Although this keeps my WAR exploded, the JAR projects do not get included in my web application’s target/myproject/WEB-INF/lib directory. Instead what is included are empty directories where my JAR files would have been, for instance
.jenkins/jobs/subco/workspace/myproject/target/myproject/WEB-INF/lib/child-jar-module-2.0.0-SNAPSHOT.jar/
How can I keep an exploded WAR, include my JAR files, and do it all from the command line (as opposed to creating a custom profile in my parent pom to do it for me)?
Edit: If you think this is a duplicate of another one, notice the part of my question where i point out that empty directories are generated when using the "prepare-package" phase. I don't want that.

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I'm new to maven.
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Thanks

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Basically I should be able to work on the same war after importing it to eclipse when I build maven project. (I'm using maven3. )
I remember that's not trivial because the war-plugin doesn't support the handy includes-configuration-element you know from the jar-plugin by default.
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This project imports/uses another maven project (which becomes a jar file) and that project in turn also imports/uses a third maven project (again a jar file).
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