Tree-based algorithm in Scala vs Earth Box - performance

I need to find is point located in a given radius. Now I have a two choices, first is to write my own algorithm for it(or using existing library) second is use postgresql earth_box utility and I can select it directly from db, using stored procedure. What is pros/cons of both in context of web application?

I would think that using the earth_box procedure in postgres would be better for the following reasons:
The database already contains the data and procedures to work with it
The database server , given a properly indexed table, should be quite efficient at executing a spatial query on its own spatial data
Using the server there's no need to query for the spatial information, transfer it to wherever you're processing it, creating a tree structure and other overhead (ties into the first bullet)
You're using code that already exists and, presumably, has been thoroughly tested and vetted
You could reuse the code in other server-side SQL from a broader number of applications such as reporting
I would definitely suggest trying the earthbox approach first and going with a custom solution only if the earthbox absolutely sucks performance-wise.
Here's a more succinct meta-reasoning from a blog post you may want to check out:
[...] the earthbox function allows us to perform a simple compare to
find all records in a certain radius. This is done by the function by
returning the great circle distance between the points, a more
thorough explanation is located at
http://en.wikipedia.org/wiki/Greatcircle.
(By meta-reasoning I mean that the simplicity of the use of earthbox makes using it a no-brainer.)

Related

IntervalTree query from database?

Just to be clear, when I say IntervalTree I'm referring to this data structure: https://en.wikipedia.org/wiki/Interval_tree
I want to build a query-able representation of the RIPE database. I want to, given an IP, retrieve its RIPE record. How do I do this?
I have a prototype of this in the following way. Use https://pypi.python.org/pypi/intervaltree, parse the RIPE file, encode IP strings like '123.123.123.123' into integers, use this to build an intervaltree using the above-mentioned module.
The problem is that this structure is too large to hold in memory. Is there some database that would be appropriate to use which has native support for something like an interval tree?
Your need is covered by an R-Tree index. They are more general than you'd think you want because they are designed to handle multiple dimensions. But you can implement them in one dimension, and they will allow for efficient range searches.
Lots of databases have them, but will call them different things. For example MySQL calls it a SPATIAL index, while PostgreSQL implements them as a type of GiST index.

How couchdb 1.6 inherently take advantage of Map reduce when it is Single Server Database

I am new to couch db, while going through documentation of Couch DB1.6, i came to know that it is single server DB, so I was wondering how map reduce inherently take advantage of it.
If i need to scale this DB then do I need to put more RAID hardware, of will it work on commodity hardware like HDFS?
I came to know that couch db 2.0 planning to bring clustering feature, but could not get proper documentation on this.
Can you please help me understanding how exactly internally file get stored and accessed.
Really appreciate your help.
I think your question is something like this:
"MapReduce is … a parallel, distributed algorithm on a cluster." [shortened from MapReduce article on Wikipedia]
But CouchDB 1.x is not a clustered database.
So what does CouchDB mean by using the term "map reduce"?
This is a reasonable question.
The historical use of "MapReduce" as described by Google in this paper using that stylized term, and implemented in Hadoop also using that same styling implies parallel processing over a dataset that may be too large for a single machine to handle.
But that's not how CouchDB 1.x works. View index "map" and "reduce" processing happens not just on single machine, but even on a single thread! As dch (a longtime contributor to the core CouchDB project) explains in his answer to https://stackoverflow.com/a/12725497/179583:
The issue is that eventually, something has to operate in serial to build the B~tree in such a way that range queries across the indexed view are efficient. … It does seem totally wacko the first time you realise that the highly parallelisable map-reduce algorithm is being operated sequentially, wat!
So: what benefit does map/reduce bring to single-server CouchDB? Why were CouchDB 1.x view indexes built around it?
The benefit is that the two functions that a developer can provide for each index "map", and optionally "reduce", form very simple building blocks that are easy to reason about, at least after your indexes are designed.
What I mean is this:
With e.g. the SQL query language, you focus on what data you need — not on how much work it takes to find it. So you might have unexpected performance problems, that may or may not be solved by figuring out the right columns to add indexes on, etc.
With CouchDB, the so-called NoSQL approach is taken to an extreme. You have to think explicitly about how you each document or set of documents "should be" found. You say, I want to be able to find all the "employee" documents whose "supervisor" field matches a certain identifier. So now you have to write a map function:
function (doc) {
if (doc.isEmployeeRecord) emit(doc.supervisor.identifier);
}
And then you have to query it like:
GET http://couchdb.local:5984/personnel/_design/my_indexes/_view/by_supervisor?key=SOME_UUID
In SQL you might simply say something like:
SELECT * FROM personnel WHERE supervisor == ?
So what's the advantage to the CouchDB way? Well, in the SQL case this query could be slow if you don't have an index on the supervisor column. In the CouchDB case, you can't really make an unoptimized query by accident — you always have to figure out a custom view first!
(The "reduce" function that you provide to a CouchDB view is usually used for aggregate functions purposes, like counting or averaging across multiple documents.)
If you think this is a dubious advantage, you are not alone. Personally I found designing my own indexes via a custom "map function" and sometimes a "reduce function" to be an interesting challenge, and it did pay off in knowing the scaling costs at least of queries (not so much for replications…).
So don't think of CouchDB view so much as being "MapReduce" (in the stylized sense) but just as providing efficiently-accessible storage for the results of running [].map(…).reduce(…) across a set of data. Because the "map" function is applied to only a document at once, the total set of data can be bigger than fits in memory at once. Because the "reduce" function is limited in its size, it further encourages efficient processing of a large set of data into an efficiently-accessed index.
If you want to learn a bit more about how the indexes generated in CouchDB are stored, you might find these articles interesting:
The Power of B-trees
CouchDB's File Format is brilliantly simple and speed-efficient (at the cost of disk space).
Technical Details, View Indexes
You may have noticed, and I am sorry, that I do not actually have a clear/solid answer of what the actual advantage and reasons were! I did not design or implement CouchDB, was only an avid user for many years.
Maybe the bigger advantage is that, in systems like Couchbase and CouchDB 2.x, the "parallel friendliness" of the map/reduce idea may come into play more. So then if you have designed an app to work in CouchDB 1.x it may then scale in the newer version without further intervention on your part.

WHat is the best solution for large caching in Ruby?

I'm building an REST API in Ruby with JRuby+Sinatra running on top of Trinidad web server.
One of the functionalities of the API will be getting very large datasets from a database and storing them in a middle caching/non relational DB layer. This is for performing filter/sorting/actions on top of that dataset without having to rebuild it from the database.
We're looking into a good/the best solution for implementing this middle layer.
My thoughts:
Using a non relational database like Riak to store the datasets and having a caching layer (like Cache Money) on top.
Notes:
Our datasets can be fairly large
Since you asked for an opinion, I'll give you mine... I think MongoDB would be a good match for your needs:
http://www.mongodb.org/
I've used used it to store large, historical datasets for a couple of years now that just keep getting bigger and bigger, and it remains up to the task. I haven't even needed to delve into "sharding" or some of the advanced features.
The reasons I think it would be appropriate for the application you describe are:
It is an indexed, schemaless document store which means it can be very "dynamic" with fields being added or removed
I've benchmarked it's performance versus some SQL databases for large "flat" data it performs orders of magnitude better in some cases.
https://github.com/guyboertje/jmongo will let you access MongoDB from JRuby

Algorithm to organize table into many tables to have less cells?

I'm not really trying to compress a database. This is more of a logical problem. Is there any algorithm that will take a data table with lots of columns and repeated data and find a way to organize it into many tables with ID's in such a way that in total there are as few cells as possible, and that this tables can be then joined with a query to replicate the original one.
I don't care about any particular database engine or language. I just want to see if there is a logical way of doing it. If you will post code, I like C# and SQL but you can use any.
I don't know of any automated algorithms but what you really need to do is heavily normalize your database. This means looking at your actual functional dependencies and breaking this off wherever it makes sense.
The problem with trying to do this in a computer program is that it isn't always clear if your current set of stored data represents all possible problem cases. You can't only look at numbers of values either. It makes little sense to break off booleans into their own table because they have only two values, for example, and this is only the tip of the iceberg.
I think that at this point, nothing is going to beat good ol' patient, hand-crafted normalization. This is something to do by hand. Any possible computer algorithm will either make a total mess of things or make you define the relationships such that you might as well do it all yourself.

schema-less data warehouse and reporting

We have a system that generates many events as the result of a phone call/web request/sms/email etc, each of these events need to be able to be stored and be available for reporting (for MI/BI etc) on, each of these events have many variables and does not fit any one specific scheme.
The structure of the event document is a key-value pair list (cdr= 1&name=Paul&duration=123&postcode=l21). Currently we have a SQL Server system using dynamically generated sparse columns to store our (flat) document, of which we have reports that run against the data, for many different reasons I am looking at other solutions.
I am looking for suggestions of a system (open or closed) that allows us to push these events in (regardless of the schema) and provide reporting and anlytics on top of it.
I have seen Pentaho and Jasper, but most of the seem to connect to a system to get the data out of it to then report on it. I really just want to be able to push a document in and have it available to be reported on.
As much as I love CouchDB, I am looking for a system that allows schema-less submitting of data and reporting on top of it (much like Pentaho, Jasper, SQL Reporting/Analytics Server etc)
I don't think there is any DBMS that will do what you want and allow an off-the-shelf reporting tool to be used. Low-latency analytic systems are not quick and easy to build. Low-latency on unstructured data is quite ambitious.
You are going to have to persist the data in some sort of database, though.
I think you may have to take a closer look at your problem domain. Are you trying to run low-latency analytical reports, or an operational report that prompts some action within the business when certain events occur? For low-latency systems you need to be quite ruthless about what constitutes operational reporting and what constitutes analytics.
Edit: Discourage the 'potentially both' mindset unless the business are prepared to pay. Investment banks and hedge funds spend big bucks and purchase supercomputers to do 'real-time analytics'. It's not a trivial undertaking. It's even less trivial when you try to do such a system and build it for high uptimes.
Even on apps like premium-rate SMS services and .com applications the business often backs down when you do a realistic scope and cost analysis of the problem. I can't say this enough. Be really, really ruthless about 'realtime' requirements.
If the business really, really need realtime analytics then you can make hybrid OLAP architectures where you have a marching lead partition on the fact table. This is an architecture where the fact table or cube is fully indexed for historical data but has a small leading partition that is not indexed and thus relatively quick to insert data into.
Analytic queries will table scan the relatively small leading data partition and use more efficient methods on the other partitions. This gives you low latency data and the ability to run efficient analytic queries over the historical data.
Run a process nightly that rolls over to a new leading partition and consolidates/indexes the previous lead partition.
This works well where you have items such as bitmap indexes (on databases) or materialised aggregations (on cubes) that are expensive on inserts. The lead partition is relatively small and cheap to table scan but efficient to trickle insert into. The roll-over process incrementally consolidates this lead partition into the indexed historical data which allows it to be queried efficiently for reports.
Edit 2: The common fields might be candidates to set up as dimensions on a fact table (e.g. caller, time). The less common fields are (presumably) coding. For an efficient schema you could move the optional coding into one or more 'junk' dimensions..
Briefly, a junk dimension is one that represents every existing combination of two or more codes. A row on the table doesn't relate to a single system entity but to a unique combination of coding. Each row on the dimension table corresponds to a distinct combination that occurs in the raw data.
In order to have any analytic value you are still going to have to organise the data so that the columns in the junk dimension contain something consistently meaningful. This goes back to some requirements work to make sure that the mappings from the source data make sense. You can deal with items that are not always recorded by using a placeholder value such as a zero-length string (''), which is probably better than nulls.
Now I think I see the underlying requirements. This is an online or phone survey application with custom surveys. The way to deal with this requirement is to fob the analytics off onto the client. No online tool will let you turn around schema changes in 20 minutes.
I've seen this type of requirement before and it boils down to the client wanting to do some stats on a particular survey. If you can give them a CSV based on the fields (i.e. with named header columns) in their particular survey they can import it into excel and pivot it from there.
This should be fairly easy to implement from a configurable online survey system as you should be able to read the survey configuration. The client will be happy that they can play with their numbers in Excel as they don't have to get their head around a third party tool. Any competent salescritter should be able to spin this to the client as a good thing. You can use a spiel along the lines of 'And you can use familiar tools like Excel to analyse your numbers'. (or SAS if they're that way inclined)
Wrap the exporter in a web page so they can download it themselves and get up-to-date data.
Note that the wheels will come off if you have larger data volumes over 65535 respondents per survey as this won't fit onto a spreadsheet tab. Excel 2007 increases this limit to 1048575. However, surveys with this volume of response will probably be in the minority. One possible workaround is to provide a means to get random samples of the data that are small enough to work with in Excel.
Edit: I don't think there are other solutions that are sufficiently flexible for this type of applicaiton. You've described a holy grail of survey statistics.
I still think that the basic strategy is to give them a data dump. You can pre-package it to some extent by using OLE automation to construct a pivot table and deliver something partially digested. The API for pivot tables in Excel is a bit hairy but this is certainly quite feasible. I have written VBA code that programatically creates pivot tables in the past so I can say from personal experience that this is feasible to do.
The problem becomes a bit more complex if you want to compute and report distributions of (say) response times as you have to construct the displays. You can programatically construct pivot charts if necessary but automating report construction through excel in this way will be a fair bit of work.
You might get some mileage from R (www.r-project.org) as you can construct a framework that lets you import data and generate bespoke reports with a bit of R Code. This is not an end-user tool but your client base sounds like they want canned reports anyway.

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