Kill watch from bash - bash

I need to be able to call this:
watch -n1 cat /proc/mdstat
from bash.
For raid creating watching (after mdadm --create etc.), and then kill it then building process will end.
#!/bin/bash
#PID=$!
while
progress=$(cat /proc/mdstat |grep -oE 'recovery = ? [0-9]*')
do
watch -n1 cat /proc/mdstat
PID=$(pidof watch)
echo "$PID" >> /mnt/pid
if (("$progress" >= "100"))
then
break
kill -9 $PID
fi
done
echo "done"
But I can not figure out how to kill watch out from bash. I tried PID=$! and PID=$$, pidof watch at the cycle and out of him, but can't assign correct PID to my variable to make kill -9 $PID.

It sounds like you'll need to have watch running until progress reaches 100 ?
watch -n1 cat /proc/mdstat &
WATCHPID=$!
while
progress=$(cat /proc/mdstat |grep -oE 'recovery = ? [0-9]*')
do
if (("$progress" >= "100"))
then
break
fi
sleep 1
done
kill $WATCHPID
echo "done"

Related

nonblocking wait ${myPid} in bash [duplicate]

Is there any builtin feature in Bash to wait for a process to finish?
The wait command only allows one to wait for child processes to finish.
I would like to know if there is any way to wait for any process to finish before proceeding in any script.
A mechanical way to do this is as follows but I would like to know if there is any builtin feature in Bash.
while ps -p `cat $PID_FILE` > /dev/null; do sleep 1; done
To wait for any process to finish
Linux (doesn't work on Alpine, where ash doesn't support tail --pid):
tail --pid=$pid -f /dev/null
Darwin (requires that $pid has open files):
lsof -p $pid +r 1 &>/dev/null
With timeout (seconds)
Linux:
timeout $timeout tail --pid=$pid -f /dev/null
Darwin (requires that $pid has open files):
lsof -p $pid +r 1m%s -t | grep -qm1 $(date -v+${timeout}S +%s 2>/dev/null || echo INF)
There's no builtin. Use kill -0 in a loop for a workable solution:
anywait(){
for pid in "$#"; do
while kill -0 "$pid"; do
sleep 0.5
done
done
}
Or as a simpler oneliner for easy one time usage:
while kill -0 PIDS 2> /dev/null; do sleep 1; done;
As noted by several commentators, if you want to wait for processes that you do not have the privilege to send signals to, you have find some other way to detect if the process is running to replace the kill -0 $pid call. On Linux, test -d "/proc/$pid" works, on other systems you might have to use pgrep (if available) or something like ps | grep "^$pid ".
I found "kill -0" does not work if the process is owned by root (or other), so I used pgrep and came up with:
while pgrep -u root process_name > /dev/null; do sleep 1; done
This would have the disadvantage of probably matching zombie processes.
This bash script loop ends if the process does not exist, or it's a zombie.
PID=<pid to watch>
while s=`ps -p $PID -o s=` && [[ "$s" && "$s" != 'Z' ]]; do
sleep 1
done
EDIT: The above script was given below by Rockallite. Thanks!
My orignal answer below works for Linux, relying on procfs i.e. /proc/. I don't know its portability:
while [[ ( -d /proc/$PID ) && ( -z `grep zombie /proc/$PID/status` ) ]]; do
sleep 1
done
It's not limited to shell, but OS's themselves do not have system calls to watch non-child process termination.
FreeBSD and Solaris have this handy pwait(1) utility, which does exactly, what you want.
I believe, other modern OSes also have the necessary system calls too (MacOS, for example, implements BSD's kqueue), but not all make it available from command-line.
From the bash manpage
wait [n ...]
Wait for each specified process and return its termination status
Each n may be a process ID or a job specification; if a
job spec is given, all processes in that job's pipeline are
waited for. If n is not given, all currently active child processes
are waited for, and the return status is zero. If n
specifies a non-existent process or job, the return status is
127. Otherwise, the return status is the exit status of the
last process or job waited for.
Okay, so it seems the answer is -- no, there is no built in tool.
After setting /proc/sys/kernel/yama/ptrace_scope to 0, it is possible to use the strace program. Further switches can be used to make it silent, so that it really waits passively:
strace -qqe '' -p <PID>
All these solutions are tested in Ubuntu 14.04:
Solution 1 (by using ps command):
Just to add up to Pierz answer, I would suggest:
while ps axg | grep -vw grep | grep -w process_name > /dev/null; do sleep 1; done
In this case, grep -vw grep ensures that grep matches only process_name and not grep itself. It has the advantage of supporting the cases where the process_name is not at the end of a line at ps axg.
Solution 2 (by using top command and process name):
while [[ $(awk '$12=="process_name" {print $0}' <(top -n 1 -b)) ]]; do sleep 1; done
Replace process_name with the process name that appears in top -n 1 -b. Please keep the quotation marks.
To see the list of processes that you wait for them to be finished, you can run:
while : ; do p=$(awk '$12=="process_name" {print $0}' <(top -n 1 -b)); [[ $b ]] || break; echo $p; sleep 1; done
Solution 3 (by using top command and process ID):
while [[ $(awk '$1=="process_id" {print $0}' <(top -n 1 -b)) ]]; do sleep 1; done
Replace process_id with the process ID of your program.
Blocking solution
Use the wait in a loop, for waiting for terminate all processes:
function anywait()
{
for pid in "$#"
do
wait $pid
echo "Process $pid terminated"
done
echo 'All processes terminated'
}
This function will exits immediately, when all processes was terminated. This is the most efficient solution.
Non-blocking solution
Use the kill -0 in a loop, for waiting for terminate all processes + do anything between checks:
function anywait_w_status()
{
for pid in "$#"
do
while kill -0 "$pid"
do
echo "Process $pid still running..."
sleep 1
done
done
echo 'All processes terminated'
}
The reaction time decreased to sleep time, because have to prevent high CPU usage.
A realistic usage:
Waiting for terminate all processes + inform user about all running PIDs.
function anywait_w_status2()
{
while true
do
alive_pids=()
for pid in "$#"
do
kill -0 "$pid" 2>/dev/null \
&& alive_pids+="$pid "
done
if [ ${#alive_pids[#]} -eq 0 ]
then
break
fi
echo "Process(es) still running... ${alive_pids[#]}"
sleep 1
done
echo 'All processes terminated'
}
Notes
These functions getting PIDs via arguments by $# as BASH array.
Had the same issue, I solved the issue killing the process and then waiting for each process to finish using the PROC filesystem:
while [ -e /proc/${pid} ]; do sleep 0.1; done
There is no builtin feature to wait for any process to finish.
You could send kill -0 to any PID found, so you don't get puzzled by zombies and stuff that will still be visible in ps (while still retrieving the PID list using ps).
If you need to both kill a process and wait for it finish, this can be achieved with killall(1) (based on process names), and start-stop-daemon(8) (based on a pidfile).
To kill all processes matching someproc and wait for them to die:
killall someproc --wait # wait forever until matching processes die
timeout 10s killall someproc --wait # timeout after 10 seconds
(Unfortunately, there's no direct equivalent of --wait with kill for a specific pid).
To kill a process based on a pidfile /var/run/someproc.pid using signal SIGINT, while waiting for it to finish, with SIGKILL being sent after 20 seconds of timeout, use:
start-stop-daemon --stop --signal INT --retry 20 --pidfile /var/run/someproc.pid
Use inotifywait to monitor some file that gets closed, when your process terminates. Example (on Linux):
yourproc >logfile.log & disown
inotifywait -q -e close logfile.log
-e specifies the event to wait for, -q means minimal output only on termination. In this case it will be:
logfile.log CLOSE_WRITE,CLOSE
A single wait command can be used to wait for multiple processes:
yourproc1 >logfile1.log & disown
yourproc2 >logfile2.log & disown
yourproc3 >logfile3.log & disown
inotifywait -q -e close logfile1.log logfile2.log logfile3.log
The output string of inotifywait will tell you, which process terminated. This only works with 'real' files, not with something in /proc/
Rauno Palosaari's solution for Timeout in Seconds Darwin, is an excellent workaround for a UNIX-like OS that does not have GNU tail (it is not specific to Darwin). But, depending on the age of the UNIX-like operating system, the command-line offered is more complex than necessary, and can fail:
lsof -p $pid +r 1m%s -t | grep -qm1 $(date -v+${timeout}S +%s 2>/dev/null || echo INF)
On at least one old UNIX, the lsof argument +r 1m%s fails (even for a superuser):
lsof: can't read kernel name list.
The m%s is an output format specification. A simpler post-processor does not require it. For example, the following command waits on PID 5959 for up to five seconds:
lsof -p 5959 +r 1 | awk '/^=/ { if (T++ >= 5) { exit 1 } }'
In this example, if PID 5959 exits of its own accord before the five seconds elapses, ${?} is 0. If not ${?} returns 1 after five seconds.
It may be worth expressly noting that in +r 1, the 1 is the poll interval (in seconds), so it may be changed to suit the situation.
On a system like OSX you might not have pgrep so you can try this appraoch, when looking for processes by name:
while ps axg | grep process_name$ > /dev/null; do sleep 1; done
The $ symbol at the end of the process name ensures that grep matches only process_name to the end of line in the ps output and not itself.

Mac app call shell script kill self

I write a mac application. I call a shell script to do some tasks in my mac app. when shell script tasks complete, I want to kill my mac app and reopen it.
I can pgrep [app_name] | xargs kill -9 in shell script. but it does not work.
When I execute this command in my terminal it works. How can I kill my mac app in my shell script ? Hope you can help.
Try doing:
/usr/bin/pkill -9 <app name>
Failing that, and if the app spawns multiple prcesses:
for PID in $(/usr/bin/pgrep <app name>); do /bin/kill -9 $PID; done
If the process is running as root, you'll need to run the script as root or with sudo.
If you're still struggling do the following to help you debug:
#!/bin/bash
APP='<appname>'
LOG= ~/debugkill.log
PIDS: `/usr/bin/pgrep $APP`
echo -e "`/bin/date`: Script running as user: `/usr/bin/whoami` \n
Process to be killed owned by: `ps u $APP | /usr/bin/awk { print $1 }'`" >> $LOG
echo -e "PIDs to terminate: $PIDS >> $LOG
echo -e "Killing PIDs..."
for PID in $PIDS; do
/bin/kill -9 $PID
if [[ `ps $PID | grep $PID | grep -v grep | awk '{ print $1 }'` == "$PID" ]]; then
echo 'killing with sudo (requires pass)'
sudo /bin/kill -9 $PID
fi
if [[ `ps $PID | grep $PID | grep -v grep | awk '{ print $1 }'` == "$PID" ]]; then
echo 'killing with killall -9'
/usr/bin/killall -9 $APP
fi
done >> $LOG
I've had issues before with not being killed from scripts and it turned out that the binary paths weren't specified explicitly for either pkill or kill - and because they are in different folders sometimes one works and the other doesn't depending on which environmental variables are at play when running it.
To relaunch your app, you need to be clear on what app it is, whether it's launched by a binary or launched by java or something, and whether any config parameters are specified when you check the process for it whilst running i.e. run 'ps ax ' and see if anything is running
like so:
/usr/sbin/xinetd -dontfork -pidfile /var/run/xinetd.pid
..as when you relaunch you will need to include the same so you'd do something like this in the script:
/usr/sbin/xinetd -dontfork -pidfile /var/run/xinetd.pid > /dev/null 2>&1
..the other option is to turn the app into a daemon via launchd and then you can simply stop and restart\stop\start the process:
http://blog.frd.mn/how-to-set-up-proper-startstop-services-ubuntu-debian-mac-windows/

How to stop a running script which calls a infinite loop

I'm writing a bash script for kicking up an uncertain program. The run time of the program is unknown. The script will also kick up a while loop for using linux commands or perf to record something in a 1 second manner.
./my_app &
$i=1
while true;
do
perf stat -a -A -e writeback:writeback_dirty_page sleep $i >> out
done
How can I stop the while loop while my_app is finished? Thank you.
Make your while loop conditional on the process id of the app existing:
./my_app &
app_pid=$!
i=1
while ps -p $app_pid >/dev/null 2>&1
do
perf stat -a -A -e writeback:writeback_dirty_page sleep $i >> out
done
Get the pid using
echo $!
then
kill
you can send kill signal from my_app to the process that spawn my_app
Here is the real example
test.sh
#!/bin/bash
./my_app.sh $$ &
while [ 1 ]
do
echo running....
sleep 2
done
my_app.sh
#!/bin/bash
sleep 10
kill -9 $1

nice way to kill piped process?

I want to process each stdout-line for a shell, the moment it is created. I want to grab the output of test.sh (a long process). My current approach is this:
./test.sh >tmp.txt &
PID=$!
tail -f tmp.txt | while read line; do
echo $line
ps ${PID} > /dev/null
if [ $? -ne 0 ]; then
echo "exiting.."
fi
done;
But unfortunately, this will print "exiting" and then wait, as the tail -f is still running. I tried both break and exit
I run this on FreeBSD, so I cannot use the --pid= option of some linux tails.
I can use ps and grep to get the pid of the tail and kill it, but thats seems very ugly to me.
Any hints?
why do you need the tail process?
Could you instead do something along the lines of
./test.sh | while read line; do
# process $line
done
or, if you want to keep the output in tmp.txt :
./test.sh | tee tmp.txt | while read line; do
# process $line
done
If you still want to use an intermediate tail -f process, maybe you could use a named pipe (fifo) instead of a regular pipe, to allow detaching the tail process and getting its pid:
./test.sh >tmp.txt &
PID=$!
mkfifo tmp.fifo
tail -f tmp.txt >tmp.fifo &
PID_OF_TAIL=$!
while read line; do
# process $line
kill -0 ${PID} >/dev/null || kill ${PID_OF_TAIL}
done <tmp.fifo
rm tmp.fifo
I should however mention that such a solution presents several heavy problems of race conditions :
the PID of test.sh could be reused by another process;
if the test.sh process is still alive when you read the last line, you won't have any other occasion to detect its death afterwards and your loop will hang.

Wait for a process to finish

Is there any builtin feature in Bash to wait for a process to finish?
The wait command only allows one to wait for child processes to finish.
I would like to know if there is any way to wait for any process to finish before proceeding in any script.
A mechanical way to do this is as follows but I would like to know if there is any builtin feature in Bash.
while ps -p `cat $PID_FILE` > /dev/null; do sleep 1; done
To wait for any process to finish
Linux (doesn't work on Alpine, where ash doesn't support tail --pid):
tail --pid=$pid -f /dev/null
Darwin (requires that $pid has open files):
lsof -p $pid +r 1 &>/dev/null
With timeout (seconds)
Linux:
timeout $timeout tail --pid=$pid -f /dev/null
Darwin (requires that $pid has open files):
lsof -p $pid +r 1m%s -t | grep -qm1 $(date -v+${timeout}S +%s 2>/dev/null || echo INF)
There's no builtin. Use kill -0 in a loop for a workable solution:
anywait(){
for pid in "$#"; do
while kill -0 "$pid"; do
sleep 0.5
done
done
}
Or as a simpler oneliner for easy one time usage:
while kill -0 PIDS 2> /dev/null; do sleep 1; done;
As noted by several commentators, if you want to wait for processes that you do not have the privilege to send signals to, you have find some other way to detect if the process is running to replace the kill -0 $pid call. On Linux, test -d "/proc/$pid" works, on other systems you might have to use pgrep (if available) or something like ps | grep "^$pid ".
I found "kill -0" does not work if the process is owned by root (or other), so I used pgrep and came up with:
while pgrep -u root process_name > /dev/null; do sleep 1; done
This would have the disadvantage of probably matching zombie processes.
This bash script loop ends if the process does not exist, or it's a zombie.
PID=<pid to watch>
while s=`ps -p $PID -o s=` && [[ "$s" && "$s" != 'Z' ]]; do
sleep 1
done
EDIT: The above script was given below by Rockallite. Thanks!
My orignal answer below works for Linux, relying on procfs i.e. /proc/. I don't know its portability:
while [[ ( -d /proc/$PID ) && ( -z `grep zombie /proc/$PID/status` ) ]]; do
sleep 1
done
It's not limited to shell, but OS's themselves do not have system calls to watch non-child process termination.
FreeBSD and Solaris have this handy pwait(1) utility, which does exactly, what you want.
I believe, other modern OSes also have the necessary system calls too (MacOS, for example, implements BSD's kqueue), but not all make it available from command-line.
From the bash manpage
wait [n ...]
Wait for each specified process and return its termination status
Each n may be a process ID or a job specification; if a
job spec is given, all processes in that job's pipeline are
waited for. If n is not given, all currently active child processes
are waited for, and the return status is zero. If n
specifies a non-existent process or job, the return status is
127. Otherwise, the return status is the exit status of the
last process or job waited for.
Okay, so it seems the answer is -- no, there is no built in tool.
After setting /proc/sys/kernel/yama/ptrace_scope to 0, it is possible to use the strace program. Further switches can be used to make it silent, so that it really waits passively:
strace -qqe '' -p <PID>
All these solutions are tested in Ubuntu 14.04:
Solution 1 (by using ps command):
Just to add up to Pierz answer, I would suggest:
while ps axg | grep -vw grep | grep -w process_name > /dev/null; do sleep 1; done
In this case, grep -vw grep ensures that grep matches only process_name and not grep itself. It has the advantage of supporting the cases where the process_name is not at the end of a line at ps axg.
Solution 2 (by using top command and process name):
while [[ $(awk '$12=="process_name" {print $0}' <(top -n 1 -b)) ]]; do sleep 1; done
Replace process_name with the process name that appears in top -n 1 -b. Please keep the quotation marks.
To see the list of processes that you wait for them to be finished, you can run:
while : ; do p=$(awk '$12=="process_name" {print $0}' <(top -n 1 -b)); [[ $b ]] || break; echo $p; sleep 1; done
Solution 3 (by using top command and process ID):
while [[ $(awk '$1=="process_id" {print $0}' <(top -n 1 -b)) ]]; do sleep 1; done
Replace process_id with the process ID of your program.
Blocking solution
Use the wait in a loop, for waiting for terminate all processes:
function anywait()
{
for pid in "$#"
do
wait $pid
echo "Process $pid terminated"
done
echo 'All processes terminated'
}
This function will exits immediately, when all processes was terminated. This is the most efficient solution.
Non-blocking solution
Use the kill -0 in a loop, for waiting for terminate all processes + do anything between checks:
function anywait_w_status()
{
for pid in "$#"
do
while kill -0 "$pid"
do
echo "Process $pid still running..."
sleep 1
done
done
echo 'All processes terminated'
}
The reaction time decreased to sleep time, because have to prevent high CPU usage.
A realistic usage:
Waiting for terminate all processes + inform user about all running PIDs.
function anywait_w_status2()
{
while true
do
alive_pids=()
for pid in "$#"
do
kill -0 "$pid" 2>/dev/null \
&& alive_pids+="$pid "
done
if [ ${#alive_pids[#]} -eq 0 ]
then
break
fi
echo "Process(es) still running... ${alive_pids[#]}"
sleep 1
done
echo 'All processes terminated'
}
Notes
These functions getting PIDs via arguments by $# as BASH array.
Had the same issue, I solved the issue killing the process and then waiting for each process to finish using the PROC filesystem:
while [ -e /proc/${pid} ]; do sleep 0.1; done
There is no builtin feature to wait for any process to finish.
You could send kill -0 to any PID found, so you don't get puzzled by zombies and stuff that will still be visible in ps (while still retrieving the PID list using ps).
If you need to both kill a process and wait for it finish, this can be achieved with killall(1) (based on process names), and start-stop-daemon(8) (based on a pidfile).
To kill all processes matching someproc and wait for them to die:
killall someproc --wait # wait forever until matching processes die
timeout 10s killall someproc --wait # timeout after 10 seconds
(Unfortunately, there's no direct equivalent of --wait with kill for a specific pid).
To kill a process based on a pidfile /var/run/someproc.pid using signal SIGINT, while waiting for it to finish, with SIGKILL being sent after 20 seconds of timeout, use:
start-stop-daemon --stop --signal INT --retry 20 --pidfile /var/run/someproc.pid
Use inotifywait to monitor some file that gets closed, when your process terminates. Example (on Linux):
yourproc >logfile.log & disown
inotifywait -q -e close logfile.log
-e specifies the event to wait for, -q means minimal output only on termination. In this case it will be:
logfile.log CLOSE_WRITE,CLOSE
A single wait command can be used to wait for multiple processes:
yourproc1 >logfile1.log & disown
yourproc2 >logfile2.log & disown
yourproc3 >logfile3.log & disown
inotifywait -q -e close logfile1.log logfile2.log logfile3.log
The output string of inotifywait will tell you, which process terminated. This only works with 'real' files, not with something in /proc/
Rauno Palosaari's solution for Timeout in Seconds Darwin, is an excellent workaround for a UNIX-like OS that does not have GNU tail (it is not specific to Darwin). But, depending on the age of the UNIX-like operating system, the command-line offered is more complex than necessary, and can fail:
lsof -p $pid +r 1m%s -t | grep -qm1 $(date -v+${timeout}S +%s 2>/dev/null || echo INF)
On at least one old UNIX, the lsof argument +r 1m%s fails (even for a superuser):
lsof: can't read kernel name list.
The m%s is an output format specification. A simpler post-processor does not require it. For example, the following command waits on PID 5959 for up to five seconds:
lsof -p 5959 +r 1 | awk '/^=/ { if (T++ >= 5) { exit 1 } }'
In this example, if PID 5959 exits of its own accord before the five seconds elapses, ${?} is 0. If not ${?} returns 1 after five seconds.
It may be worth expressly noting that in +r 1, the 1 is the poll interval (in seconds), so it may be changed to suit the situation.
On a system like OSX you might not have pgrep so you can try this appraoch, when looking for processes by name:
while ps axg | grep process_name$ > /dev/null; do sleep 1; done
The $ symbol at the end of the process name ensures that grep matches only process_name to the end of line in the ps output and not itself.

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