I'm trying to install ROOT (from cern) and I have a problem. This is the error that I have after make comand.
bin/rootcling: error while loading shared libraries: libtinfow.so.6: cannot open shared object file: No such file or directory
How can I resolve this? I looked for a libtinfow package but seems it doen't exist!
You need to install ncurses shared lib, and while configuring ncurses before building do:
./configure --prefix=/path/to/ncurses --with-termlib --with-shared --enable-widec
Related
I'm trying to build snappy, but I end up getting the error
error while loading shared libraries: libatomic.so.1: cannot open shared object file: No such file or directory
When I go look in /lib/gcc/x86_64-redhat-linux/8/ I do find a file libatomic.so
Which has the contents
INPUT ( /usr/lib64/libatomic.so.1.2.0 )
then if I go looking in /usr/lb64/ only these files exist
libatomic_ops_gpl.so.1
libatomic_ops_gpl.so.1.1.2
libatomic_ops.so.1
libatomic_ops.so.1.1.1
I try doing yum install libatomic_ops.x86_64, it says nothing to do. That is the only package that comes up when doing yum search libatomic.
I'm confused with how to solve this issue. Thanks!
For what it matters, this is a redhat 8.6 machine.
This was solved by running dnf install gcc, this updated gcc and allowed for yum install libatomic to work
I'm trying to build gcc 7.2.0. I get this error:
fatal error: gnu/stubs-32.h: No such file or directory
I don't have root access or sudo access on this machine so I cannot use apt. What source package can I install that will resolve this?
Try installing glibc-devel, see https://www.question-defense.com/2010/03/09/usrincludegnustubs-h727-error-gnustubs-32-h-no-such-file-or-directory and https://stackoverflow.com/a/7412698/6723250.
I am trying to install omni compiler in order to compile XcalableMP programs on OSX. I can ./configure successfully as per the instructions but am receiving this error when I make:
../include/xmp_internal.h:19:10: fatal error: mpi.h: No such file or directory
My Open MPI is installed via homebrew and mpi.h is located through my Cellar folder. How do I go about including this header file?
can you try the following command to be sure the location of the installed openmpi is correct:
mpicc -showme
Then, are you sure the mpi path is in your path, try to set these environment variables and then try:
Note that I assume the openmpi is installed in "/home/openmpi" path for example:
export PATH=/home/opempi/bin:/home/opempi/include:$PATH
and for the runtime:
export LD_LIBRARY_PATH=/home/openmpi/lib:$LD_LIBRARY_PATH
Then try to configure and make again the omnicomppiler,
I'm trying to compile miniSAT on Kali Linux 64 bits but I keep getting the error message:
fatal error: zlib.h: no such file or directory
I have read that there might be a linking problem that makes the compiler unable to find the header files, but I'm new to Linux and do not know how to solve that.
You should install the development support files for zlib, try:
sudo apt-get install libz-dev
Other package names: zlib1g-dev.
If you've already zlib library, make sure you're compiling your code sources with -lz. See: missing zlib.h in ubuntu.
Install zlib from it's source, solve my similar error.
Download last version from this then:
configure
make -j4
make install
I recently tried installing IJulia on OS X 10.6.8, with Julia v0.2.1. After installing IPython, I ran Pkg.build("IJulia") and got the following console errors:
julia> Pkg.build("IJulia")
INFO: Building Homebrew
INFO: Cloning brew from https://github.com/staticfloat/homebrew.git
Cloning into '/Users/peterrichter/.julia/v0.2/Homebrew/deps/usr'...
dyld: Library not loaded: /usr/lib/libcurl.4.dylib
Referenced from: /Applications/Julia-0.2.1.app/Contents/Resources/julia/libexec/git-core/git-remote-https
Reason: Incompatible library version: git-remote-https requires version 7.0.0 or later, but libcurl.4.dylib provides version 6.0.0
==============================[ ERROR: Homebrew ]===============================
brew_prefix! not defined
at /Users/peterrichter/.julia/v0.2/Homebrew/src/Homebrew.jl:200
at /Users/peterrichter/.julia/v0.2/Homebrew/deps/build.jl:1
================================================================================
It seems to be complaining about an old version of libcurl (?), but when I run curl -V in Terminal, it says I am using curl 7.19.7. Likewise, executing ipython --version shows that I'm using 2.0.0, the latest version of IPython. Am I misreading the error message? If so, what steps should I take to fix it?
Additional Errors
In addition to the error text I pasted above, it also printed the following:
INFO: Building Nettle
INFO: Attempting to Create directory /Users/peterrichter/.julia/v0.2/Nettle/deps/downloads
INFO: Directory /Users/peterrichter/.julia/v0.2/Nettle/deps/downloads already created
INFO: Downloading file http://www.lysator.liu.se/~nisse/archive/nettle-2.7.1.tar.gz
INFO: Done downloading file http://www.lysator.liu.se/~nisse/archive/nettle-2.7.1.tar.gz
INFO: Attempting to Create directory /Users/peterrichter/.julia/v0.2/Nettle/deps/src
INFO: Directory /Users/peterrichter/.julia/v0.2/Nettle/deps/src already created
INFO: Attempting to Create directory /Users/peterrichter/.julia/v0.2/Nettle/deps
INFO: Directory /Users/peterrichter/.julia/v0.2/Nettle/deps already created
INFO: Attempting to Create directory /Users/peterrichter/.julia/v0.2/Nettle/deps/src/nettle-2.7.1
INFO: Directory /Users/peterrichter/.julia/v0.2/Nettle/deps/src/nettle-2.7.1 already created
INFO: Attempting to Create directory /Users/peterrichter/.julia/v0.2/Nettle/deps/builds/nettle
INFO: Directory /Users/peterrichter/.julia/v0.2/Nettle/deps/builds/nettle already created
INFO: Changing Directory to /Users/peterrichter/.julia/v0.2/Nettle/deps/builds/nettle
checking build system type... x86_64-apple-darwin10.8.0
checking host system type... x86_64-apple-darwin10.8.0
checking for -R flag... none
Searching for libraries
checking /Users/peterrichter/.julia/v0.2/Nettle/deps/usr/lib... not found
checking /usr/local/lib... added
checking /sw/local/lib... not found
checking /sw/lib... not found
checking /usr/gnu/lib... not found
checking /opt/gnu/lib... not found
checking /sw/gnu/lib... not found
checking /usr/freeware/lib... not found
checking /usr/pkg/lib... not found
checking for gcc... gcc
checking whether the C compiler works... no
configure: error: in `/Users/peterrichter/.julia/v0.2/Nettle/deps/builds/nettle':
configure: error: C compiler cannot create executables
See `config.log' for more details
===============================[ ERROR: Nettle ]================================
failed process: Process(`/Users/peterrichter/.julia/v0.2/Nettle/deps/src/nettle-2.7.1/configure --disable-openssl --libdir=/Users/peterrichter/.julia/v0.2/Nettle/deps/usr/lib --prefix=/Users/peterrichter/.julia/v0.2/Nettle/deps/usr`, ProcessExited(77)) [77]
at /Users/peterrichter/.julia/v0.2/Nettle/deps/build.jl:35
================================================================================
INFO: Building ZMQ
INFO: Building IJulia
Found IPython version 2.0.0 ... ok.
Creating julia profile in IPython...
(Existing KernelManager.kernel_cmd setting in ipython_config.py is untouched.)
(Existing IPythonWidget.execute_on_complete_input setting in ipython_qtconsole_config.py is untouched.)
(Existing FrontendWidget.lexer_class setting in ipython_qtconsole_config.py is untouched.)
(Existing NotebookApp.port setting in ipython_notebook_config.py is untouched.)
(Existing ipynblogo.png file untouched.)
(Existing ipynblogo.svg file untouched.)
(Existing favicon.ico file untouched.)
(Existing custom.js file untouched.)
(Existing julia.js file untouched.)
================================[ BUILD ERRORS ]================================
WARNING: Homebrew and Nettle had build errors.
- packages with build errors remain installed in /Users/peterrichter/.julia/v0.2
- build a package and all its dependencies with `Pkg.build(pkg)`
- build a single package by running its `deps/build.jl` script
================================================================================
It looks like you don't have a C compiler installed so the Pkg.add is failing on some of IJulia's nettle dependency.
Your first errors dependency though looks like it's a linking conflict between the bundled git implementation for your julia distribution and the system provided library.
You can see exactly what shared library the git app is using with otool.
otool -L /Applications/Julia-0.2.1.app/Contents/Resources/julia/libexec/git-core/git-remote-https
This should list the full path of the libcurl dylib that the git-remote-https binary is linking to.
You can compare that against the output for otool -L $(which curl) and see if they are linking to the same library.
You can also run otool -L on the referenced libraries themselves to see what versions they are. This should at least tell you what the conflict is. It's possible that you will need to upgrade the git version that your julia distribution uses. But I'm not sure what would be involved there. I just install julia from source which bypasses this particular problem.
You might find it easier to do the same.
What worked for me might be of help to you:
Using latest Anaconda free python, download windows32 exe file from github and extract, start julia.bat, then in the Julia command window type Pkg.add("IJulia"), In another command window type
ipython notebook --profile=julia and enjoy the webpage that opens in your default browser(Chrome)!!
I had trouble because of the syntax of the --profile=julia command part.
I too use macports and not Homebrew.
I seem to have fixed this by changing lines 21,22 in ~/.julia/v0.3/Nettle/deps/build.jl to:
libdirs = String["$(julia_usrdir)/lib"; "/opt/local/lib"]
includedirs = String["$(julia_usrdir)/include"; "/opt/local/include"]
i.e. I added the macports lib and include dirs explicitly.
Can someone please notify the appropriate authorities, cheers.