bioinformatics

bioinformatics

Error parsing strand (?) from GFF line - Happening in various programs

Shap explainer gives an error with ECFP4 fingerprints

liquibase.lockservice.StandardLockService.waitForLock

Can I use Entrez Direct to query multiple nucleotide accession version identifiers against a database without using epost?

BWA fail to locate the index files

How to align read to two SHORT reference sequences and see percentage that mapped to one or the other reference?

Snakemake Ambiguity between 2 rules with similar output file type

baseDir issue with nextflow

How to split fastq file that has both forward and reverse reads mixed

Syntax conflict for "{" using Nextflow

Unable to add qualifier in Artemis 18.2.0

What is the maximum quality score in a VCF file

Accessing Snakemake Config Samples

how to use psiblaster to align uniref50 protein db and blast 300m+ queries fastest way with 36 nodes and 52 cores each

"Different row counts implied by arguments" in attempt to plot BAM file data

Directory argument for Bowtie2

R how to accesses to the data associated to a list of S4 class

How to create a .GTF file?

A possible bug in PDB module of Biopython (getting wrong coordinates for one of the residues)

How can Nifti files be restructured so that they can be fitted in a CNN?

How to specify amount of characters per line on a fasta file

Removing text from a fasta gene name between two characters

BWA-mem and sambamba read group line error

Failure in pip installing biopython

How to suppress verbose list of remaining jobs if Snakemake job failed?

How to generate a custom bed file to use for bedtools intersect?

WildcardError in Snakefile

How to retain reads on only an certain size in a bam file?

Gene set enrichment analysis (GSEA) for Bio-Rad Bio-Plex human cytokine screening panel

What can be the reason of getting negative branches lengths after treeannotator analysis?

Filtering out DNA repeats with vcftools

Missing ',' in line when Biopython reads a nexus tree

Nextflow: Missing output file(s) expected by process

How to write a batch script for IGV that directly leads me to my chosen BP range on each chromosome

Conflict between MAFFT and new PRANK installation

samtools calmd is pretty slow

gnomAD database allele frequency

how to interpret log fold change (log2FC) on two cases

Rosalind Translating RNA into Protein problem

Temp file not being deleted

How do I use plink on a MacBook Air? [closed]

Plink - reverse complement

Building a PPI network graph from differentially expressed genes and obtaining an interaction file for cytoHubba

Nextflow: How to process multiple samples

Need command or script to rename a list of files in linux using a pattern match

NCBIWWW.qblast parsing xml files

blastn -mt_mode 1 -num_threads 24 terminate called after throwing an instance of 'std::length_error'

confused about the annotation on pdb website

How to download a list of `FastQ` files in `Nextflow` using `fromSRA` function?

Problems with degradome sequencing results

How to download genetic/SNP data from UK Biobank

RGI output filename does not match snakefile output filename

Assign edge direction based on edge parameter

snakemake 6.0.5: Input a list of folders and multiple files from each folder (to merge Lanes)

Minimap2 for Nanopore cDNA-seq alignment to reference: command not found, why?

Why is the output file from Biopython not found?

Run rule in Snakemake only if another rule fails, for the specific samples that it failed for?

How to print 2 conecutive lines from a file in python?

MANTA (Structural Variant Detection Tool) on Centos 8

How to bind a ligand to a protein in PyMOL?

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