Debugging vtable Linker Errors in GCC - debugging

Now and then when using GCC I get cryptic errors like this:
undefined reference to 'vtable for classname'
When it's not caused by a missing library, this not-very-descriptive error message always causes me to dig through code files line by line to find the missing implementation for a virtual function. Is there a way to make the linker tell me which virtual function it is missing, perhaps a flag or something? Or is it maybe telling me but I don't understand what it's saying?

From gcc faq:
When building C++, the linker says my
constructors, destructors or virtual
tables are undefined, but I defined
them
The ISO C++ Standard specifies that
all virtual methods of a class that
are not pure-virtual must be defined,
but does not require any diagnostic
for violations of this rule
[class.virtual]/8. Based on this
assumption, GCC will only emit the
implicitly defined constructors, the
assignment operator, the destructor
and the virtual table of a class in
the translation unit that defines its
first such non-inline method.
Therefore, if you fail to define this
particular method, the linker may
complain about the lack of definitions
for apparently unrelated symbols.
Unfortunately, in order to improve
this error message, it might be
necessary to change the linker, and
this can't always be done.
The solution is to ensure that all
virtual methods that are not pure are
defined. Note that a destructor must
be defined even if it is declared
pure-virtual [class.dtor]/7.
The solution that I adopt is search the classname and seek virtual methods declaration and check if there is any definition. I didn't found any other solution for this.

Related

Undefined reference when trying to link libxc to fortran [duplicate]

I am trying to build a Fortran program, but I get errors about an undefined reference or an unresolved external symbol. I've seen another question about these errors, but the answers there are mostly specific to C++.
What are common causes of these errors when writing in Fortran, and how do I fix/prevent them?
This is a canonical question for a whole class of errors when building Fortran programs. If you've been referred here or had your question closed as a duplicate of this one, you may need to read one or more of several answers. Start with this answer which acts as a table of contents for solutions provided.
A link-time error like these messages can be for many of the same reasons as for more general uses of the linker, rather than just having compiled a Fortran program. Some of these are covered in the linked question about C++ linking and in another answer here: failing to specify the library, or providing them in the wrong order.
However, there are common mistakes in writing a Fortran program that can lead to link errors.
Unsupported intrinsics
If a subroutine reference is intended to refer to an intrinsic subroutine then this can lead to a link-time error if that subroutine intrinsic isn't offered by the compiler: it is taken to be an external subroutine.
implicit none
call unsupported_intrinsic
end
With unsupported_intrinsic not provided by the compiler we may see a linking error message like
undefined reference to `unsupported_intrinsic_'
If we are using a non-standard, or not commonly implemented, intrinsic we can help our compiler report this in a couple of ways:
implicit none
intrinsic :: my_intrinsic
call my_intrinsic
end program
If my_intrinsic isn't a supported intrinsic, then the compiler will complain with a helpful message:
Error: ‘my_intrinsic’ declared INTRINSIC at (1) does not exist
We don't have this problem with intrinsic functions because we are using implicit none:
implicit none
print *, my_intrinsic()
end
Error: Function ‘my_intrinsic’ at (1) has no IMPLICIT type
With some compilers we can use the Fortran 2018 implicit statement to do the same for subroutines
implicit none (external)
call my_intrinsic
end
Error: Procedure ‘my_intrinsic’ called at (1) is not explicitly declared
Note that it may be necessary to specify a compiler option when compiling to request the compiler support non-standard intrinsics (such as gfortran's -fdec-math). Equally, if you are requesting conformance to a particular language revision but using an intrinsic introduced in a later revision it may be necessary to change the conformance request. For example, compiling
intrinsic move_alloc
end
with gfortran and -std=f95:
intrinsic move_alloc
1
Error: The intrinsic ‘move_alloc’ declared INTRINSIC at (1) is not available in the current standard settings but new in Fortran 2003. Use an appropriate ‘-std=*’ option or enable ‘-fall-intrinsics’ in order to use it.
External procedure instead of module procedure
Just as we can try to use a module procedure in a program, but forget to give the object defining it to the linker, we can accidentally tell the compiler to use an external procedure (with a different link symbol name) instead of the module procedure:
module mod
implicit none
contains
integer function sub()
sub = 1
end function
end module
use mod, only :
implicit none
integer :: sub
print *, sub()
end
Or we could forget to use the module at all. Equally, we often see this when mistakenly referring to external procedures instead of sibling module procedures.
Using implicit none (external) can help us when we forget to use a module but this won't capture the case here where we explicitly declare the function to be an external one. We have to be careful, but if we see a link error like
undefined reference to `sub_'
then we should think we've referred to an external procedure sub instead of a module procedure: there's the absence of any name mangling for "module namespaces". That's a strong hint where we should be looking.
Mis-specified binding label
If we are interoperating with C then we can specify the link names of symbols incorrectly quite easily. It's so easy when not using the standard interoperability facility that I won't bother pointing this out. If you see link errors relating to what should be C functions, check carefully.
If using the standard facility there are still ways to trip up. Case sensitivity is one way: link symbol names are case sensitive, but your Fortran compiler has to be told the case if it's not all lower:
interface
function F() bind(c)
use, intrinsic :: iso_c_binding, only : c_int
integer(c_int) :: f
end function f
end interface
print *, F()
end
tells the Fortran compiler to ask the linker about a symbol f, even though we've called it F here. If the symbol really is called F, we need to say that explicitly:
interface
function F() bind(c, name='F')
use, intrinsic :: iso_c_binding, only : c_int
integer(c_int) :: f
end function f
end interface
print *, F()
end
If you see link errors which differ by case, check your binding labels.
The same holds for data objects with binding labels, and also make sure that any data object with linkage association has matching name in any C definition and link object.
Equally, forgetting to specify C interoperability with bind(c) means the linker may look for a mangled name with a trailing underscore or two (depending on compiler and its options). If you're trying to link against a C function cfunc but the linker complains about cfunc_, check you've said bind(c).
Not providing a main program
A compiler will often assume, unless told otherwise, that it's compiling a main program in order to generate (with the linker) an executable. If we aren't compiling a main program that's not what we want. That is, if we're compiling a module or external subprogram, for later use:
module mod
implicit none
contains
integer function f()
f = 1
end function f
end module
subroutine s()
end subroutine s
we may get a message like
undefined reference to `main'
This means that we need to tell the compiler that we aren't providing a Fortran main program. This will often be with the -c flag, but there will be a different option if trying to build a library object. The compiler documentation will give the appropriate options in this case.
There are many possible ways you can see an error like this. You may see it when trying to build your program (link error) or when running it (load error). Unfortunately, there's rarely a simple way to see which cause of your error you have.
This answer provides a summary of and links to the other answers to help you navigate. You may need to read all answers to solve your problem.
The most common cause of getting a link error like this is that you haven't correctly specified external dependencies or do not put all parts of your code together correctly.
When trying to run your program you may have a missing or incompatible runtime library.
If building fails and you have specified external dependencies, you may have a programming error which means that the compiler is looking for the wrong thing.
Not linking the library (properly)
The most common reason for the undefined reference/unresolved external symbol error is the failure to link the library that provides the symbol (most often a function or subroutine).
For example, when a subroutine from the BLAS library, like DGEMM is used, the library that provides this subroutine must be used in the linking step.
In the most simple use cases, the linking is combined with compilation:
gfortran my_source.f90 -lblas
The -lblas tells the linker (here invoked by the compiler) to link the libblas library. It can be a dynamic library (.so, .dll) or a static library (.a, .lib).
In many cases, it will be necessary to provide the library object defining the subroutine after the object requesting it. So, the linking above may succeed where switching the command line options (gfortran -lblas my_source.f90) may fail.
Note that the name of the library can be different as there are multiple implementations of BLAS (MKL, OpenBLAS, GotoBLAS,...).
But it will always be shortened from lib... to l... as in liopenblas.so and -lopenblas.
If the library is in a location where the linker does not see it, you can use the -L flag to explicitly add the directory for the linker to consider, e.g.:
gfortran -L/usr/local/lib -lopenblas
You can also try to add the path into some environment variable the linker searches, such as LIBRARY_PATH, e.g.:
export LIBRARY_PATH=$LIBRARY_PATH:/usr/local/lib
When linking and compilation are separated, the library is linked in the linking step:
gfortran -c my_source.f90 -o my_source.o
gfortran my_source.o -lblas
Not providing the module object file when linking
We have a module in a separate file module.f90 and the main program program.f90.
If we do
gfortran -c module.f90
gfortran program.f90 -o program
we receive an undefined reference error for the procedures contained in the module.
If we want to keep separate compilation steps, we need to link the compiled module object file
gfortran -c module.f90
gfortran module.o program.f90 -o program
or, when separating the linking step completely
gfortran -c module.f90
gfortran -c program.f90
gfortran module.o program.o -o program
Problems with the compiler's own libraries
Most Fortran compilers need to link your code against their own libraries. This should happen automatically without you needing to intervene, but this can fail for a number of reasons.
If you are compiling with gfortran, this problem will manifest as undefined references to symbols in libgfortran, which are all named _gfortran_.... These error messages will look like
undefined reference to '_gfortran_...'
The solution to this problem depends on its cause:
The compiler library is not installed
The compiler library should have been installed automatically when you installed the compiler. If the compiler did not install correctly, this may not have happened.
This can be solved by correctly installing the library, by correctly installing the compiler. It may be worth uninstalling the incorrectly installed compiler to avoid conflicts.
N.B. proceed with caution when uninstalling a compiler: if you uninstall the system compiler it may uninstall other necessary programs, and may render other programs unusable.
The compiler cannot find the compiler library
If the compiler library is installed in a non-standard location, the compiler may be unable to find it. You can tell the compiler where the library is using LD_LIBRARY_PATH, e.g. as
export LD_LIBRARY_PATH="/path/to/library:$LD_LIBRARY_PATH"
If you can't find the compiler library yourself, you may need to install a new copy.
The compiler and the compiler library are incompatible
If you have multiple versions of the compiler installed, you probably also have multiple versions of the compiler library installed. These may not be compatible, and the compiler might find the wrong library version.
This can be solved by pointing the compiler to the correct library version, e.g. by using LD_LIBRARY_PATH as above.
The Fortran compiler is not used for linking
If you are linking invoking the linker directly, or indirectly through a C (or other) compiler, then you may need to tell this compiler/linker to include the Fortran compiler's runtime library. For example, if using GCC's C frontend:
gcc -o program fortran_object.o c_object.o -lgfortran

GNU C++ import name mangling [duplicate]

I came across an interesting error when I was trying to link to an MSVC-compiled library using MinGW while working in Qt Creator. The linker complained of a missing symbol that went like _imp_FunctionName. When I realized That it was due to a missing extern "C", and fixed it, I also ran the MSVC compiler with /FAcs to see what the symbols are. Turns out, it was __imp_FunctionName (which is also the way I've read on MSDN and quite a few guru bloggers' sites).
I'm thoroughly confused about how the MinGW linker complains about a symbol beginning with _imp, but is able to find it nicely although it begins with __imp. Can a deep compiler magician shed some light on this? I used Visual Studio 2010.
This is fairly straight-forward identifier decoration at work. The imp_ prefix is auto-generated by the compiler, it exports a function pointer that allows optimizing binding to DLL exports. By language rules, the imp_ is prefixed by a leading underscore, required since it lives in the global namespace and is generated by the implementation and doesn't otherwise appear in the source code. So you get _imp_.
Next thing that happens is that the compiler decorates identifiers to allow the linker to catch declaration mis-matches. Pretty important because the compiler cannot diagnose declaration mismatches across modules and diagnosing them yourself at runtime is very painful.
First there's C++ decoration, a very involved scheme that supports function overloads. It generates pretty bizarre looking names, usually including lots of ? and # characters with extra characters for the argument and return types so that overloads are unambiguous. Then there's decoration for C identifiers, they are based on the calling convention. A cdecl function has a single leading underscore, an stdcall function has a leading underscore and a trailing #n that permits diagnosing argument declaration mismatches before they imbalance the stack. The C decoration is absent in 64-bit code, there is (blessfully) only one calling convention.
So you got the linker error because you forgot to specify C linkage, the linker was asked to match the heavily decorated C++ name with the mildly decorated C name. You then fixed it with extern "C", now you got the single added underscore for cdecl, turning _imp_ into __imp_.

"irq_to_desc" undefined?

everybody.
I need to use $irq_to_desc in my project, but despite the fact I included all h files it needs, gcc still emits ""irq_to_desc" undefined!" messages. I found something on the topic here http://comments.gmane.org/gmane.linux.kernel.kernelnewbies/34403 but I still dont understand how to fix this prroblem.
I don't believe you can use irq_to_desc() in a module.
If CONFIG_GENERIC_HARDIRQS isn't defined, then irq_to_desc() is #defined as a macro in include/linux/irqnr.h. Since the variable it references, irq_desc, isn't in an EXPORT_SYMBOL or EXPORT_SYMBOL_GPL declaration, I don't think you could link a module using that variable into the kernel -- only statically compiled in-kernel code can use it.
If CONFIG_GENERIC_HARDIRQS is defined, then a function irq_to_desc() is declared in include/linux/irqnr.h and defined in kernel/irq/irqdesc.c. There are two definitions of irq_to_desc() in kernel/irq/irqdesc.c depending upon the value of CONFIG_SPARSE_IRQ. There is no corresponding EXPORT_SYMBOL or EXPORT_SYMBOL_GPL declaration for the function, so it can't be used in modules -- only statically compiled in-kernel code.

Why gcc gives error of unused variable for local variables but not for global variables?

I have a question regarding gcc. Why I get an error of unused variable when I define the variable locally in a function but not when the variable is global in a unique file?.
I can understand that it can be use for someone else, but to do that then I need to put the external word right?
Thanks in advance.
The compiler has no way of knowing if a global variable is used - it could be used from a compilation unit written in a completely different language, for example.
If by "global in a unique file", you mean "int x;" outside of any function, the it's not the compilers job to detect that, the variable needs to be available to the linker in case another compilation unit needs it (such as errno).
If you meant "static int x" where it's not made available to the linker, this is probably just a choice made by GCC. I don't believe compilers are required to notify of this and it does no real damage other than wasting a few bytes in your address space.
Because global variables can be used on any other place that the compiler cannot known. For instance on a external library o program.
Unused locals can be determined by the compiler. Unused globals can only be determined by the linker, since they can be shared across object files.
In general, the linker doesn't do warnings for code-gen.
When the variable is global, the compiler has not full visibility across all the compilation units in the project - the variable could be modified in another compilation unit. The linker is able to tell that it is unused, probably it will remove it from the object file.
Because if it's global it can be used by another module that gets linked in later.
It's a common idiom to have all your globals defined in a single file. That file may not even have any code, much less code that uses all the variables.
I have encountered the same question when I build the dalvikVM in android2.3 and I got the key of the point. It is because that the parameters of the compiler is too strict:
LOCAL_CFLAGS += -Werror.

GCC 4.7 fails to inline with message "function body not available"

I am trying to compile some legacy code with more modern toolchains. I have tracked down one of my issues to the switch from gcc 4.6 to gcc 4.7:
Some of the functions are annotated with the inline keyword. Gcc fails on these with the error message:
error: inlining failed in call to always_inline 'get_value_global': function body not available
What is the correct way of dealing with this issue? How could the function body not be available? Should the compiler not make sure that it is available in all situations that require it?
Edit
As requested (in a deleted comment), an example of a signature of a function resulting in the error:
inline struct a_value_fmt const *find_a_value_format(struct base_fmt *base)
{
/* the code */
}
That error is typical to inline functions declared in source files, rather than in header files, in which case the compiler is not able to inline them (as the code of the function to be inlined must be visible to the compiler in the same source file being compiled). So, first thing I would check is that all functions declared inline are indeed defined in header files.
It may be that a change in GCC diagnostics in 4.7 caused the error to surface, and that it went silent in GCC 4.6 (but that's just a speculation).
The quoted error indicates that the function is declared with __attribute__((always_inline)). Note that GCC may fail to inline and report a different (and quite obscure) error if function is declared always_inline, but not with the inline keyword - so make sure that any function declared as always_inline is also declared as inline.
Few more tips:
General advice, which may not be applicable: since this is a legacy codebase, you may want to re-evaluate which functions should be inlined, being on the critical path, and which aren't, based on updated profiling results. Sometimes, inline is used generously, even when it is not required, or redundant. In some cases, the fix may be to remove the inline keyword in places where it is not needed.
When functions are declared in header files, the compiler considers them for inlining automatically (given they are small enough, and the compiler thinks that inlining them will improve performance, based on its heuristics) - even when the inline keyword is not used. inline is sort of a "recommendation" to the compiler, and it doesn't have to obey (unless it is given along with the always_inline attribute).
Modern compilers make relatively smart inlining decisions, so it's usually best to let the compiler do it's thing, and declare functions as inline (and moving their implementations to header files) in the appliation hot spots, based on profiling results.

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