Algorithm for genogram - ruby

I am developing a ruby program that should be able to draw a genogram on a web page.
I am therefore looking for an algorithm for drawing a genogram or a similar tree-structure.
I prefer an algorithm in ruby but also other languages will do or some references explaning the principles behind such an algorithm
A recursive algorithm in c++ has been published here but it is not documented in a way that allows me to use it.
Any help about how to implement a genogram would be much apriciated

AFAIK, the canonical work on rendering trees is "Drawing Dynamic Trees" by Sven Moen. You should be able to find the paper or an implementation of his polyline algorithm with a bit of googling.
You could also have a look at Graphviz as that can handle trees as well as arbitrary graphs.

Related

Practical implementations of constrained conforming Delaunay triangulations

I need to create a mesh of vertices to use for pathfinding, given an existing outline. I think that for my use case a constrained conforming Delaunay triangulation algorithm would be best suited, however i dont know how to implement such algorithm.
What are possible practical(not theoretical) implementations of CCDT? Or at least what should i research into in order to come up with my own implementation?
I am using c#, but any language example would be helpful.
I assume that you are searching for an implementation of constrained Delaunay triangulation (CDT) in 2D, with a conforming algorithm.
You definitely do not want to implement a CDT yourself. Having it robust is difficult, and requires to use dedicated exact number types for degenerated cases.
There exists several open-source implementations of CDT in 2D (both with the conforming algorithm). I can cite Triangle, implemented in C, from Jonathan Shewchuk, and CGAL 2D triangulations, implemented in generic C++ (with C++ templates), by the CGAL project. For CGAL, the conforming algorithm is in the 2D mesh generator chapter: see Building Conforming Triangulations. To be honest, I have to say that I am the author of the 2D conforming algorithm in CGAL.
Since you're working in C#, the Triangle library that was cited in some of the other answers may be a good solution for you if you can use unmanaged code. I've used it and it is excellent. Although Java is not your language of interest, I've got a Java implementation at https://github.com/gwlucastrig/Tinfour which might present an example of an more object-oriented API. There are also some write-ups on the ideas and applications of the Constrained Conforming Delaunay Triangulation which might help you figure out how to apply the CCDT to your particular problem. You can find these at https://github.com/gwlucastrig/Tinfour/wiki/About-the-Constrained-Delaunay-Triangulation and https://github.com/gwlucastrig/Tinfour/wiki/Tutorial-Using-Polygon-Based-Constraints

What is the core difference between algorithm and pseudocode?

As the question describe itself "What is the core difference between algorithm and pseudocode?".
algorithm
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely the sequence of steps taken to solve a problem. The steps are normally "sequence," "selection, " "iteration," and a case-type statement.
Pseudocode
Pseudocode is an artificial and informal language that helps programmers develop algorithms. Pseudocode is a "text-based" detail (algorithmic) design tool.
The rules of Pseudocode are reasonably straightforward. All statements showing "dependency" are to be indented. These include while, do, for, if, switch. Examples below will illustrate this notion.
I think all the other answers give useful explanations and definitions, but I'm going to give mine.
An algorithm is the idea of how to obtain some result from some input. It is an abstract concept; an algorithm is not something material by itself, but more something like an imagination or a deduction, a thing that only exists in the mind. In the broad sense, any sequence of steps that give you some thing(s) from other thing(s) could be called an algorithm. For example, if the screen of your computer is dirty, "spraying some glass cleaner on it and wipe it with a cloth" could be said to be an algorithm to solve the problem of how to obtain a clean screen form a dirty screen. It is important to note the difference between the problem itself (getting a clean screen) and the algorithm (wiping it with a cloth and cleaner); generally, several different algorithms are possible to solve the same problem. The idea of complexity is inherent to the algorithms itself, not the problem or the particular implementation or execution of the algorithm.
Pseudocode is a language to express algorithms. Since, as said before, algorithms are only concepts, we need to use something to express them and explain them to other people. Pseudocode is a convenient way for many computer science algorithms, because it is usually unambiguous, easy to read and somewhat similar to many programming languages. However, a specific programming language like C or Java can also be used to express and algorithm (it's just less convenient to those not familiarized with that language). In other cases, pseudocode may not be the best way to express an algorithm; for example, many graph and tree algorithms can be explained more easily with drawings or diagrams. In the previous example, the algorithm to get your screen cleaned is probably better expressed in a natural language like English, because it is simple and specific enough for that case.
Obviously, terms are frequently used loosely and exchanged depending on the context, and there's no need to be nitpicky about it, but I think it is important to have the difference clear. An algorithm doesn't stop being an algorithm just because it is written in Python instead of pseudocode. Pseudocode is just a convenient and widespread communication tool to express them.
An algorithm is something (a sequence of steps) you can do. Pseudocode is a notation to describe an algorithm.
Algorithm is something which is represented in mathematical terms. It includes, analysis, complexity considerations(best, average and worstcase analysis etc.).Pseudo code is a human readable representation of a program.
From Wikipedia :
Starting from an initial state and initial input (perhaps empty), the instructions describe a computation that, when executed, proceeds through a finite number of well-defined successive states, eventually producing "output" and terminating at a final ending state. 
With a pseudo language one can implement an algorithm without using a programming language such as C.
An example of pseudo language is Flow Charts.

Algorithm to do Minimization in Integer Programming

I understand that doing minimization in integer programming is a very complex problem. But what makes this problem so difficult?
If I were to (attempt) to write an algorithm to solve it, what would I need to take into account? I'm only familiar with the branch-and-bound technique for solving it and I'm wondering what sort of roadblocks I will face when attempting to apply this technique programatically.
I'm wondering what sort of roadblocks I will face when attempting to apply this technique programatically.
None in particular (assuming a fairly straightforward implementation without a lot of tricks). The algorithms aren’t complicated – they are complex, that’s a fundamental difference.
Techniques such as branch and bound or branch and cut try to prune the search tree and thus speed up the running time. But the whole problem tree is nevertheless exponentially large, hence the problem.
Like the other said, those problem are very hard and there are no simple solution nor simple algorithm that apply to all classes of problems.
The "classic" way of solving those problem is to do a branch-and-bound and apply the simplex algorithm at each node, as you say in your question. However, I would not recommand implementing this yourself if you are not an expert.
As for a lot of numerical methods, it is very hard to get it right (good parameter values, good optimisations), and a lot have been done (see CPLEX, COIN_OR, etc).
It's not that you can't do it: the branch-and-bound part is pretty straigtforward, but without all the tricks your program will be really slow.
Also, you will need a simplex implementation and this is not something you want to do yourself: you will have to use a third-part lib anyway.
Most likely, wether
if your data set is not that big (try it !), and you are not interested in solving it really fast: use something like COIN-OR or lp_solve with the default method, it will work;
if your data set is really big (and/or you need to find a solution quickly each time), you need to work with an expert in this field.
My main point is that only experienced people will know which algorithm will perform better on your problem, wich form of the model will be the easiest to solve, which method to apply and what kind of optimisations you can try.
If you are interested in those problems, I would recommend this book for an introduction to the math behind all this (with a lot of examples). It is incredibly expansive, so you may want to go to a library instead of buying it: Nemhauser and Wolsey.
Integer programming is NP-hard. That's why it is so difficult.
There is a tutorial that you might be interested.
The first thing you do before you solve any mathematical optimization problem is you categorize it. Except special cases, most of the time, integer programming problems will be np-hard. So instead of using an "algorithm", you will use a "heuristic". The final solution you will find will not be a guaranteed optimum, but it will be a pretty good solution for real life problems.
Your main roadblock will your programming skills. Heuristic programming requires a good level of programming understanding. So instead of programming your own heuristic you are better of using well known package (eg, COIN-OR, free). This way you can focus on your problem instead of the heuristic.

Learning efficient algorithms

Up until now I've mostly concentrated on how to properly design code, make it as readable as possible and as maintainable as possible. So I alway chose to learn about the higher level details of programming, such as class interactions, API design, etc.
Algorithms I never really found particularly interesting. As a result, even though I can come up with a good design for my programs, and even if I can come up with a solution to a given problem it rarely is the most efficient.
Is there a particular way of thinking about problems that helps you come up with an as efficient solution as possible, or is it simple a matter of practice and/or memorizing?
Also, what online resources can you recommend that teach you various efficient algorithms for different problems?
Data dominates. If you design your program around the right abstract data structures (ADTs), you often get a clean design, the algorithms follow quite naturally and when performance is lacking, you should be able to "plug in" more efficient ones.
A strong background in maths and logic helps here, as it allows you to visualize your program at a high level as the interaction between functions, sets, graphs, sequences, etc. You then decide whether the sets need to be ordered (balanced BST, O(lg n) operations) or not (hash tables, O(1) operations), what operations need to supported on sequences (vector-like or list-like), etc.
If you want to learn some algorithms, get a good book such as Cormen et al. and try to implement the main data structures:
binary search trees
generic binary search trees (that work on more than just int or strings)
hash tables
priority queues/heaps
dynamic arrays
Introduction To Algorithms is a great book to get you thinking about efficiency of different algorithms/data structures.
The authors of the book also teach an algorithms course on MIT . You can find most lectures here
I would say that in coming up with good algorithms (which is actually part of good design IMHO), you have to develop a way of thinking. This is best done by studying algorithm design. By study I don't mean just knowing all the common algorithms covered in a textbook, but actually understanding how and why they work, and being able to apply the basic idea contained in them to actual problems you are trying to solve.
I would suggest reading a good book on algorithms (my favourite is CLRS). For an online resource I would recommend the series of articles in the TopCoder Algorithm Tutorials.
I do not understand why you would mention practice and memorization in the same breath. Memorization won't help you at all (you probably already know this), but practice is essential. If you cannot apply what you learned, its not really learning. You can practice at various online programming contest/puzzle sites like SPOJ, Project Euler and PythonChallenge.
Recommendations:
First of all i recommend the book "Intro to Algorithms, Second Edition By corman", great book has most(if not all) of the algorithms you will need. (Some of the more important topics are sorting-algorithms, shortest paths, dynamic programing, many data structures like bst, hash maps, heaps).
another great way to learn algorithms is http://ace.delos.com/usacogate, great practice after the begining.
To your questions you will just get used to write good fast running code, after a little practice you just wouldnt want to write un-efficient code.
While I think #larsmans is correct inasmuch that understanding logic and maths is a fast way to understanding how to choose useful ADTs for solving a given problem, studying existing solutions may be more instructive for those of us who struggle with those topics. In particular, reviewing code of established software (OSS) that solves some similar problem as the one you're interested in.
I find a particularly good method for this method of study is reviewing unit tests of such a project. Apache Lucene, for example, has a source control repository containing numerous examples. While it doesn't reveal the underlying algorithms, it helps trace to particular functionality that solves a certain problem. This leads to an opportunity for studying its innards - i.e. an interesting algorithm. In Lucene's case inverted indices come to mind.
While this does not guarantee the algorithm you discover is the best, it's likely one that's received a lot scrutiny and probably comes from project with an active mailing that may answer your questions. So it's a good resource for finding a solution that is probably better than what most of us would come up with on our own.

Real world implementations of "classical algorithms"

I wonder how many of you have implemented one of computer science's "classical algorithms" like Dijkstra's algorithm or data structures (e.g. binary search trees) in a real world, not academic project?
Is there a benefit to our dayjobs in knowing these algorithms and data structures when there are tons of libraries, frameworks and APIs which give you the same functionality?
Is there a benefit to our dayjobs in knowing these algorithms and data structures when there are tons of libraries, frameworks and APIs which give you the same functionality?
The library doesn't know what your problem domain is and won't be able to chose the correct algorithm to do the job. That is why I think it is important to know about them: then YOU can make the correct choice of algorithms to solve YOUR problem.
Knowing, or being able to understand these algorithms is important, these are the tools of your trade. It does not mean you have to be able to implement A* in an hour from memory. But you should be able to figure out what the advantages of using a red-black tree as opposed to a normal unbalanced tree are so you can decide if you need it or not. You need to be able to judge the fitness of an algorithm for solving your problem.
This might sound too school-masterish but these "classical algorithms" were not invented to give college students exam questions, they were invented to solve problems or improve on current solutions, just like the array, the linked list or the stack are building blocks to write a program so are some of these. Just like in math where you move from addition and subtraction to integration and differentiation, these are advanced techniques that will help you solve problems that are out there.
They might not be directly applicable to your problems or work situation but in the long run knowing of them will help you as a professional software engineer.
To answer your question, I did an implementation of A* recently for a game.
Is there a benefit to understanding your tools, rather than simply knowing that they exist?
Yes, of course there is. Taking a trivial example, don't you think there's a benefit to knowing what the difference is List (or your language's equivalent dynamic array implementation) and LinkedList (or your language's equivalent)? It's pretty important to know that one has constant random access time, while the other is linear. And one requires N copies if you insert a value in the middle of the sequence, while the other can do it in constant time.
Don't you think there's an advantage to understanding that the same sorting algorithm isn't always optimal? That for almost-sorted data, quicksort sucks, for example? Naively just calling Sort() and hoping for the best can become ridiculously expensive if you don't understand what's happening under the hood.
Of course there are a lot of algorithms you probably won't need, but even so, just understanding how they work may make it easier for yourself to come up with efficient algorithms to solve other, unrelated, problems.
Well, someone has to write the libraries. While working at a mapping software company, I implemented Dijkstra's, as well as binary search trees, b-trees, n-ary trees, bk-trees and hidden markov models.
Besides, if all you want is a single 'well known' algorithm, and you also want the freedom to specialise it and optimise it if it becomes critical to performance, including a whole library seems like a poor choice.
We use a home grown implementation of a p-random number generator from Knuth SemiNumeric as an aid in some statistical processing
In my previous workplace, which was an EDA company, we implemented versions of Prim and Dijsktra's algorithms, disjoint set data structures, A* search and more. All of these had real world significance. I believe this is dependent on problem domain - some domains are more algorithm-intensive and some less so.
Having said that, there is a fine line to walk - I see no business reason for re-implementing STL or Java Generics. In many cases, a standard library is better than "inventing a wheel". The more you are near your core application, the more it may be necessary to implement a textbook algorithm or data structure.
If you never work with performance-critical code, consider yourself lucky. However, I consider this scenario unrealistic. Performance problems could occur anywhere. And then it's necessary to know how to fix that problem. Obviously, merely knowing a few algorithm names isn't enough here – unless you want to implement them all and try them out one after the other.
No, knowing (at least some of) the inner workings of different algorithms is important for gauging their strengths and weaknesses and for analyzing how they would handle your situation.
Obviously, if there's a library already implementing exactly what you need, you're incredibly lucky. But let's face it, even if there is such a library, using it is often not completely straightforward (at the very least, interfaces and data representation often have to be adapted) so it's still good to know what to expect.
A* for a pac man clone. It took me weeks to really get but to this day I consider it a thing of beauty.
I've had to implement some of the classical algorithms from numerical analysis. It was easier to write my own than to connect to an existing library. Also, I've had to write variations on classical algorithms because the textbook case didn't fit my application.
For classical data structures, I nearly always use the standard libraries, such as STL for C++. The one time recently when I thought STL didn't have the structure I needed (a heap) I rolled my own, only to have someone point out almost immediately that I didn't need to do that.
Classical algorithms I have used in actual work:
A topological sort
A red-black tree (although I will
confess that I only had to implement
insertions for that application and
it only got used in a prototype).
This got used to implement an
'ordered dict' type structure in
Python.
A priority queue
State machines of various sorts
Probably one or two others I can't remember.
As to the second part of the question:
An understanding of how the algorithms work, their complexity and semantics gets used on a fairly regular basis. They also inform the design of systems. Occasionally one has to do things involving parsing or protocol handling, or some computation that's slightly clever. Having a working knowledge of what the algorithms do, how they work, how expensive they are and where one might find them lying around in library code goes a long way to knowing how to avoid reinventing the wheel poorly.
I use the Levenshtein distance algorithm to help implement a 'Did you mean [suggested word]?' feature in our website search.
Works quite well when combined with our 'tagging' system, which allows us to associate extra words (other than those in title/description/etc) with items in the database. \
It's not perfect by any means, but it's way better than most corporate site searches, if I don't say so myself ; )
Classical algorithms are usually associated with something glamorous, like games, or Web search, or scientific computation. However, I had to use some of the classical algorithms for a mere enterprise application.
I was building a metadata migration tool, and I had to use topological sort for dependency resolution, various forms of graph traversals for queries on metadata, and a modified variation of Tarjan's union-find datastructure to partition forest-like structured metadata to trees.
That was a really satisfying experience. Most of those algorithms were implemented before, but their implementations lacked something that I would need for my task. That's why It's important to understand their internals.

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