Combinations with multiple containers of varying sizes - algorithm

If you know what this kind of problem is called, let me know (unless you actually know the answer to the question).
If I have a set Z of objects, is there an algorithm for diving them up between a bunch of containers (each holding a certain number of objects)?
To slightly complicate the problem, let's assume the set of objects we start with has a subset X. There are X containers, and each container must hold a single element of X, in addition to other objects (if it has room).
The best way I can think of doing this currently is looking at the disjunction of Z and X, let's call it Y. Then we can generate the z choose x combinations, and then expand that out for all possible combinations of x.
Example:
The actual problem is basically generating all events in a space. Suppose we have two event triggers (X) and 2 event arguments (Y), where Z = X U Y. Each event must have a trigger, and it can have 0...N arguments (depending on the type of event, but that isn't important for now. A trigger can also be an argument. Clearly, in this situation we can have a single event with one trigger and 3 arguments (one of which is the second trigger)
Our event space is as follows (Trigger[Arguments], + indicates a new event):
X1[] + X2[]
X1[Y1] + X2[]
X1[Y2] + X2[]
X1[] + X2[Y1]
X1[] + X2[Y2]
X1[Y1] + X2[Y2]
X1[Y2] + X2[Y1]
X1[X2]
X1[X2,Y1]
X1[X2,Y2]
X1[X2,Y1,Y2]
X2[X1]
X2[X1,Y1]
X2[X1,Y2]
X2[X1,Y1,Y2]
I'm pretty sure that's all the combinations.
Update:
After thinking a bit more about the problem, I have a few thoughts on constraints and stuff: Rules for creating "events":
1) There is an event for every trigger, and every event must have a trigger
2) Event must have > 0 arguments
3) Events cannot share arguments
4) Triggers can be used as arguments
For a brute force solution, perhaps one could generate all permutations of the triggers + events and then eliminate results that don't match the above 4 rules, and treat the ordering as grouping of events?
Thanks for any problem names or ideas!

Algorithm:
For all nonempty subsets Triggers of X:
For all maps from (X \ Triggers) to X:
For all maps from Y to (X union {None}):
print the combination, where an assignment of y in Y to None means y is omitted
In Python:
def assignments(xs, ys):
asgns = [[]]
for x in xs:
asgns1 = []
for y in ys:
for asgn in asgns:
asgn1 = asgn[:]
asgn1.append((x, y))
asgns1.append(asgn1)
asgns = asgns1
return asgns
def combinations(xs, ys):
xroleasgns = assignments(xs, ('argument', 'trigger'))
for xroleasgn in xroleasgns:
triggers = [x for (x, role) in xroleasgn if role == 'trigger']
if (xs or ys) and not triggers:
continue
xargs = [x for (x, role) in xroleasgn if role == 'argument']
for xargasgn in assignments(xargs, triggers):
for yargasgn in assignments(ys, [None] + triggers):
d = dict((x, []) for x in triggers)
for xarg, t in xargasgn:
d[t].append(xarg)
for yarg, t in yargasgn:
if t is not None:
d[t].append(yarg)
print ' + '.join('%s[%s]' % (t, ','.join(args)) for (t, args) in d.iteritems())
"""
>>> assign.combinations(['X1','X2'],['Y1','Y2'])
X1[X2]
X1[X2,Y1]
X1[X2,Y2]
X1[X2,Y1,Y2]
X2[X1]
X2[X1,Y1]
X2[X1,Y2]
X2[X1,Y1,Y2]
X2[] + X1[]
X2[] + X1[Y1]
X2[Y1] + X1[]
X2[] + X1[Y2]
X2[] + X1[Y1,Y2]
X2[Y1] + X1[Y2]
X2[Y2] + X1[]
X2[Y2] + X1[Y1]
X2[Y1,Y2] + X1[]
"""

Here is my java implementation over9000's solution to the original problem:
public static void main(String[] args) throws Exception {
ArrayList xs = new ArrayList();
ArrayList ys = new ArrayList();
xs.add("X1");
xs.add("X2");
ys.add("Y1");
ys.add("Y2");
combinations(xs,ys);
}
private static void combinations(ArrayList xs, ArrayList ys) {
ArrayList def = new ArrayList();
def.add("argument");
def.add("trigger");
ArrayList<ArrayList> xroleasgns = assignments(xs, def);
for(ArrayList xroleasgn:xroleasgns){
// create triggers list
ArrayList triggers = new ArrayList();
for(Object o:xroleasgn){
Pair p = (Pair)o;
if("trigger".equals(p.b.toString()))
triggers.add(p.a);
}
if((xs.size()>0 || ys.size()>0) && triggers.size()==0)
continue;
// create xargs list
ArrayList xargs = new ArrayList();
for(Object o:xroleasgn){
Pair p = (Pair)o;
if("argument".equals(p.b.toString()))
xargs.add(p.a);
}
// Get combinations!
for(ArrayList xargasgn:assignments(xargs,triggers)){
ArrayList yTriggers = new ArrayList(triggers);
yTriggers.add(null);
for(ArrayList yargasgn:assignments(ys,yTriggers)){
// d = dict((x, []) for x in triggers)
HashMap<Object,ArrayList> d = new HashMap<Object,ArrayList>();
for(Object x:triggers)
d.put(x, new ArrayList());
for(Object o:xargasgn){
Pair p = (Pair)o;
d.get(p.b).add(p.a);
}
for(Object o:yargasgn){
Pair p = (Pair)o;
if(p.b!=null){
d.get(p.b).add(p.a);
}
}
for(Entry<Object, ArrayList> e:d.entrySet()){
Object t = e.getKey();
ArrayList args = e.getValue();
System.out.print(t+"["+args.toString()+"]"+"+");
}
System.out.println();
}
}
}
}
private static ArrayList<ArrayList> assignments(ArrayList xs, ArrayList def) {
ArrayList<ArrayList> asgns = new ArrayList<ArrayList>();
asgns.add(new ArrayList()); //put an initial empty arraylist
for(Object x:xs){
ArrayList asgns1 = new ArrayList();
for(Object y:def){
for(ArrayList<Object> asgn:asgns){
ArrayList asgn1 = new ArrayList();
asgn1.addAll(asgn);
asgn1.add(new Pair(x,y));
asgns1.add(asgn1);
}
}
asgns = asgns1;
}
return asgns;
}

Related

Compact way to produce a large sequence of strings in lexical order

I want to generate a sequence of strings with the following properties:
Lexically ordered
Theoretically infinite
Compact over a realistic range
Generated by a simple process of incrementation
Matches the regexp /\w+/
The obvious way to generate a lexically-ordered sequence is to choose a string length and pad the strings with a base value like this: 000000, 000001, etc. This approach poses a trade-off between the number of permutations and compactness: a string long enough to yield many permutations will be filled many zeros along the way. Plus, the length I choose sets an upper bound on the total number of permutations unless I have some mechanism for expanding the string when it maxes out.
So I came up with a sequence that works like this:
Each string consists of a "head", which is a base-36 number, followed by an underscore, and then the "tail", which is also a base-36 number padded by an increasing number of zeros
The first cycle goes from 0_0 to 0_z
The second cycle goes from 1_00 to 1_zz
The third cycle goes from 2_000 to 2_zzz, and so on
Once the head has reached z and the tail consists of 36 zs, the first "supercycle" has ended. Now the whole sequence starts over, except the z remains at the beginning, so the new cycle starts with z0_0, then continues to z1_00, and so on
The second supercycle goes zz0_0, zz1_00, and so on
Although the string of zs in the head could become unwieldy over the long run, a single supercycle contains over 10^56 permutations, which is far more than I ever expect to use. The sequence is theoretically infinite but very compact within a realistic range. For instance, the trillionth permutation is a succinct 7_bqd55h8s.
I can generate the sequence relatively simply with this javascript function:
function genStr (n) {
n = BigInt(n);
let prefix = "",
cycle = 0n,
max = 36n ** (cycle + 1n);
while (n >= max) {
n -= max;
if (cycle === 35n) {
prefix += "z";
cycle = 0n;
} else {
cycle++;
}
max = 36n ** (cycle + 1n);
}
return prefix
+ cycle.toString(36)
+ "_"
+ n.toString(36).padStart(Number(cycle) + 1, 0);
}
The n parameter is a number that I increment and pass to the function to get the next member of the sequence. All I need to keep track of is a simple integer, making the sequence very easy to use.
So obviously I spent a lot of time on this and I think it's pretty good, but I'm wondering if there is a better way. Is there a good algorithm for generating a sequence along the lines of the one I'm looking for?
A close idea to yours. (more rafined than my first edit...).
Let our alphabet be A = {0,1,2,3}.
Let |2| mean we iterate from 0 to 2 and |2|^2 mean we generate the cartesian product in a lexically sorted manner (00,01,10,11).
We start with
0 |3|
So we have a string of length 2. We "unshift" the digit 1 which "factorizes" since any 0|3|... is less than 1|3|^2.
1 |3|^2
Same idea: unshift 2, and make words of length 4.
2 |3|^3
Now we can continue and generate
3 |2| |3|^3
Notice |2| and not |3|. Now our maximum number becomes 32333. And as you did, we can now add the carry and start a new supercycle:
33 0|3|
This is a slight improvement, since _ can now be part of our alphabet: we don't need to reserve it as a token separator.
In our case we can represent in a supercycle:
n + n^2 + ... + n^(n-1) + (n-1) * n^(n-1)
\-----------------------/\--------------/
geometric special
In your case, the special part would be n^n (with the nuance that you have theorically one char less so replace n with n-1 everywhere)
The proposed supercycle is of length :
P = (n \sum_{k = 0}^{n-2} n^k) + (n-1) * n^(n-1)
P = (n \sum_{k = 0}^{n-3} n^k) + n^n
P = n(n^{n-2} - 1)/(n-1) + n^n
Here is an example diff with alphabet A={0,1,2}
my genStr(grandinero)
,00 0_0
,01 0_1
,02 0_2
,100 1_00
,101 1_01
,102 1_02
,110 1_10
,111 1_11
,112 1_12
,120 1_20
,121 1_21
,122 1_22
,2000 2_000
,2001 2_001
,2002 2_002
,2010 2_010
,2011 2_011
,2012 2_012
,2020 2_020
,2021 2_021
,2022 2_022
,2100 2_100
,2101 2_101
,2102 2_102
,2110 2_110
,2111 2_111
,2112 2_112
,2120 2_120
,2121 2_121
,2122 2_122
22,00 2_200 <-- end of my supercycle if no '_' allowed
22,01 2_201
22,02 2_202
22,100 2_210
22,101 2_211
22,102 2_212
22,110 2_220
22,111 2_221
22,112 2_222 <-- end of yours
22,120 z0_0
That said, for a given number x, we can can count how many supercycles (E(x / P)) there are, each supercycle making two leading e (e being the last char of A).
e.g: A = {0,1,2} and x = 43
e = 2
P = n(n^{n-2} - 1)/(n-1) + n^n = 3(3^1 -1)/2 + 27 = 30
// our supercycle is of length 30
E(43/30) = 1 // 43 makes one supercycle and a few more "strings"
r = x % P = 13 // this is also x - (E(43/30) * 30) (the rest of the euclidean division by P)
Then for the left over (r = x % P) two cases to consider:
either we fall in the geometric sequence
either we fall in the (n-1) * n^(n-1) part.
1. Adressing the geometric sequence with cumulative sums (x < S_w)
Let S_i be the cumsum of n, n^2,..
S_i = n\sum_{k = 0}^{i-1} n^k
S_i = n/(n-1)*(n^i - 1)
which gives S_0 = 0, S_1 = n, S_2 = n + n^2...
So basically, if x < S_1, we get 0(x), elif x < S_2, we get 1(x-S_1)
Let S_w = S_{n-1} the count of all the numbers we can represent.
If x <= S_w then we want the i such that
S_i < x <= S_{i+1} <=> n^i < (n-1)/n * x + 1 <= n^{i+1}
We can then apply some log flooring (base(n)) to get that i.
We can then associate the string: A[i] + base_n(x - S_i).
Illustration:
This time with A = {0,1,2,3}.
Let x be 17.
Our consecutive S_i are:
S_0 = 0
S_1 = 4
S_2 = S_1 + 4^2 = 20
S_3 = S_2 + 4^3 = 84
S_w = S_{4-1} = S_3 = 84
x=17 is indeed less than 84, we will be able to affect it to one of the S_i ranges.
In particular S_1==4 < x==17 <= S_2==20.
We remove the strings encoded by the leading 0(there are a number S_1 of those strings).
The position to encode with the leading 1 is
x - 4 = 13.
And we conclude the thirteen's string generated with a leading 1 is base_4(13) = '31' (idem string -> '131')
Should we have had x = 21, we would have removed the count of S_2 so 21-20 = 1, which in turn gives with a leading 2 the string '2001'.
2. Adressing x in the special part (x >= S_w)
Let's consider study case below:
with A = {0,1,2}
The special part is
2 |1| |2|^2
that is:
2 0 00
2 0 01
2 0 02
2 0 10
2 0 11
2 0 12
2 0 20
2 0 21
2 0 22
2 1 20
2 1 21
2 1 22
2 1 10
2 1 11
2 1 12
2 1 20
2 1 21
2 1 22
Each incremented number of the second column (here 0 to 1 (specified from |1|)) gives 3^2 combination.
This is similar to the geometric series except that here each range is constant. We want to find the range which means we know which string to prefix.
We can represent it as the matrix
20 (00,01,02,10,11,12,20,21,22)
21 (00,01,02,10,11,12,20,21,22)
The portion in parenthesis is our matrix.
Every item in a row is simply its position base_3 (left-padded with 0).
e.g: n=7 has base_3 value '21'. (7=2*3+1).
'21' does occur in position 7 in the row.
Assuming we get some x (relative to that special part).
E(x / 3^2) gives us the row number (here E(7/9) = 0 so prefix is '20')
x % 3^2 give us the position in the row (here base_3(7%9)='21' giving us the final string '2021')
If we want to observe it remember that we substracted S_w=12 before to get x = 7, so we would call myGen(7+12)
Some code
Notice the same output as long as we stand in the "geometric" range, without supercycle.
Obviously, when carry starts to appear, it depends on whether I can use '_' or not. If yes, my words get shorter otherwise longer.
// https://www.cs.sfu.ca/~ggbaker/zju/math/int-alg.html
// \w insensitive could give base64
// but also éè and other accents...
function base_n(x, n, A) {
const a = []
while (x !== 0n) {
a.push(A[Number(x % n)])
x = x / n // auto floor with bigInt
}
return a.reverse().join('')
}
function mygen (A) {
const n = A.length
const bn = BigInt(n)
const A_last = A[A.length-1]
const S = Array(n).fill(0).map((x, i) => bn * (bn ** BigInt(i) - 1n) / (bn - 1n))
const S_w = S[n-1]
const w = S_w + (bn - 1n) * bn ** (bn - 1n)
const w2 = bn ** (bn - 1n)
const flog_bn = x => {
// https://math.stackexchange.com/questions/1627914/smart-way-to-calculate-floorlogx
let L = 0
while (x >= bn) {
L++
x /= bn
}
return L
}
return function (x) {
x = BigInt(x)
let r = x % w
const q = (x - r) / w
let s
if (r < S_w) {
const i = flog_bn(r * (bn - 1n) / bn + 1n)
const r2 = r - S[i]
s = A[i] + base_n(r2, bn, A).padStart(i+1, '0')
} else {
const n2 = r - S_w
const r2 = n2 % w2
const q2 = (n2 - r2 ) / w2
s = A_last + A[q2] + base_n(r2, bn, A).padStart(n-1, '0')
}
// comma below __not__ necessary, just to ease seeing cycles
return A_last.repeat(2*Number(q)) +','+ s
}
}
function genStr (A) {
A = A.filter(x => x !== '_')
const bn_noUnderscore = BigInt(A.length)
return function (x) {
x = BigInt(x);
let prefix = "",
cycle = 0n,
max = bn_noUnderscore ** (cycle + 1n);
while (x >= max) {
x -= max;
if (cycle === bn_noUnderscore - 1n) {
prefix += "z";
cycle = 0n;
} else {
cycle++;
}
max = bn_noUnderscore ** (cycle + 1n);
}
return prefix
+ base_n(cycle, bn_noUnderscore, A)
+ "_"
+ base_n(x, bn_noUnderscore, A).padStart(Number(cycle) + 1, 0);
}
}
function test(a, b, x){
console.log(a(x), b(x))
}
{
console.log('---my supercycle is shorter if underscore not used. Plenty of room for grandinero')
const A = '0123456789abcdefghijklmnopqrstuvwxyz'.split('').sort((a,b)=>a.localeCompare(b))
let my = mygen(A)
const grandinero = genStr(A)
test(my, grandinero, 1e4)
test(my, grandinero, 1e12)
test(my, grandinero, 106471793335560744271846581685593263893929893610517909620n) // cycle ended for me (w variable value)
}
{
console.log('---\n my supercycle is greater if underscore is used in my alphabet (not grandinero since "forbidden')
// underscore used
const A = '0123456789abcdefghijklmnopqrstuvwxyz_'.split('').sort((a,b)=>a.localeCompare(b))
let my = mygen(A)
const grandinero = genStr(A)
test(my, grandinero, 1e12)
test(my, grandinero, 106471793335560744271846581685593263893929893610517909620n) // cycle ended for me (w variable value)
test(my, grandinero, 1e57) // still got some place in the supercycle
}
After considering the advice provided by #kaya3 and #grodzi and reviewing my original code, I have made some improvements. I realized a few things:
There was a bug in my original code. If one cycle ends at z_z (actually 36 z's after the underscore, but you get the idea) and the next one begins at z0_0, then lexical ordering is broken because _ comes after 0. The separator (or "neck") needs to be lower in lexical order than the lowest possible value of the head.
Though I was initially resistant to the idea of rolling a custom baseN generator so that more characters can be included, I have now come around to the idea.
I can squeeze more permutations out of a given string length by also incrementing the neck. For example, I can go from A00...A0z to A10...A1z, and so on, thus increasing the number of unique strings I can generate with A as the head before I move on to B.
With that in mind, I have revised my code:
// this is the alphabet used in standard baseN conversions:
let baseAlpha = "0123456789abcdefghijklmnopqrstuvwxyz";
// this is a factory for creating a new string generator:
function sequenceGenerator (config) {
let
// alphabets for the head, neck and body:
headAlpha = config.headAlpha,
neckAlpha = config.neckAlpha,
bodyAlpha = config.bodyAlpha,
// length of the body alphabet corresponds to the
// base of the numbering system:
base = BigInt(bodyAlpha.length),
// if bodyAlpha is identical to an alphabet that
// would be used for a standard baseN conversion,
// then use the built-in method, which should be
// much faster:
convertBody = baseAlpha.startsWith(bodyAlpha)
? (n) => n.toString(bodyAlpha.length)
// otherwise, roll a custom baseN generator:
: function (n) {
let s = "";
while (n > 0n) {
let i = n % base;
s = bodyAlpha[i] + s;
n = n / base;
}
return s;
},
// n is used to cache the last iteration and is
// incremented each time you call `getNext`
// it can optionally be initialized to a value other
// than 0:
n = BigInt(config.start || 0),
// see below:
headCycles = [0n],
cycleLength = 0n;
// the length of the body increases by 1 each time the
// head increments, meaning that the total number of
// permutations increases geometrically for each
// character in headAlpha
// here we cache the maximum number of permutations for
// each length of the body
// since we know these values ahead of time, calculating
// them in advance saves time when we generate a new
// string
// more importantly, it saves us from having to do a
// reverse calculation involving Math.log, which requires
// converting BigInts to Numbers, which breaks the
// program on larger numbers:
for (let i = 0; i < headAlpha.length; i++) {
// the maximum number of permutations depends on both
// the string length (i + 1) and the number of
// characters in neckAlpha, since the string length
// remains the same while the neck increments
cycleLength += BigInt(neckAlpha.length) * base ** BigInt(i + 1);
headCycles.push(cycleLength);
}
// given a number n, this function searches through
// headCycles to find where the total number of
// permutations exceeds n
// this is how we avoid the reverse calculation with
// Math.log to determine which head cycle we are on for
// a given permutation:
function getHeadCycle (n) {
for (let i = 0; i < headCycles.length; i++) {
if (headCycles[i] > n) return i;
}
}
return {
cycleLength: cycleLength,
getString: function (n) {
let cyclesDone = Number(n / cycleLength),
headLast = headAlpha[headAlpha.length - 1],
prefix = headLast.repeat(cyclesDone),
nn = n % cycleLength,
headCycle = getHeadCycle(nn),
head = headAlpha[headCycle - 1],
nnn = nn - headCycles[headCycle - 1],
neckCycleLength = BigInt(bodyAlpha.length) ** BigInt(headCycle),
neckCycle = nnn / neckCycleLength,
neck = neckAlpha[Number(neckCycle)],
body = convertBody(nnn % neckCycleLength);
body = body.padStart(headCycle , bodyAlpha[0]);
return prefix + head + neck + body;
},
getNext: function () { return this.getString(n++); }
};
}
let bodyAlpha = "0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ_abcdefghijklmnopqrstuvwxyz",
getStr = sequenceGenerator({
// achieve more permutations within a supercycle
// with a larger headAlpha:
headAlpha: "123456789ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz",
// the highest value of neckAlpha must be lower than
// the lowest value of headAlpha:
neckAlpha: "0",
bodyAlpha: bodyAlpha
});
console.log("---supercycle length:");
console.log(Number(getStr.cycleLength));
console.log("---first two values:")
console.log(getStr.getNext());
console.log(getStr.getNext());
console.log("---arbitrary large value (1e57):");
console.log(getStr.getString(BigInt(1e57)));
console.log("");
// here we use a shorter headAlpha and longer neckAlpha
// to shorten the maximum length of the body, but this also
// decreases the number of permutations in the supercycle:
getStr = sequenceGenerator({
headAlpha: "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz",
neckAlpha: "0123456789",
bodyAlpha: bodyAlpha
});
console.log("---supercycle length:");
console.log(Number(getStr.cycleLength));
console.log("---first two values:");
console.log(getStr.getNext());
console.log(getStr.getNext());
console.log("---arbitrary large value (1e57):");
console.log(getStr.getString(BigInt(1e57)));
EDIT
After further discussion with #grodzi, I have made some more improvements:
I realized that the "neck" or separator wasn't providing much value, so I have gotten rid of it. Later edit: actually, the separator is necessary. I am not sure why I thought it wasn't. Without the separator, the beginning of each new supercycle will lexically precede the end of the previous supercycle. I haven't changed my code below, but anyone using this code should include a separator. I have also realized that I was wrong to use an underscore as the separator. The separator must be a character, such as the hyphen, which lexically precedes the lowest digit used in the sequence (0).
I have taken #grodzi's suggestion to allow the length of the tail to continue growing indefinitely.
Here is the new code:
let baseAlpha = "0123456789abcdefghijklmnopqrstuvwxyz";
function sequenceGenerator (config) {
let headAlpha = config.headAlpha,
tailAlpha = config.tailAlpha,
base = BigInt(tailAlpha.length),
convertTail = baseAlpha.startsWith(tailAlpha)
? (n) => n.toString(tailAlpha.length)
: function (n) {
if (n === 0n) return "0";
let s = "";
while (n > 0n) {
let i = n % base;
s = tailAlpha[i] + s;
n = n / base;
}
return s;
},
n = BigInt(config.start || 0);
return {
getString: function (n) {
let cyclesDone = 0n,
headCycle = 0n,
initLength = 0n,
accum = 0n;
for (;; headCycle++) {
let _accum = accum + base ** (headCycle + 1n + initLength);
if (_accum > n) {
n -= accum;
break;
} else if (Number(headCycle) === headAlpha.length - 1) {
cyclesDone++;
initLength += BigInt(headAlpha.length);
headCycle = -1n;
}
accum = _accum;
}
let headLast = headAlpha[headAlpha.length - 1],
prefix = headLast.repeat(Number(cyclesDone)),
head = headAlpha[Number(headCycle)],
tail = convertTail(n),
tailLength = Number(headCycle + initLength);
tail = tail.padStart(tailLength, tailAlpha[0]);
return prefix + head + tail;
},
getNext: function () { return this.getString(n++); }
};
}
let alpha = "0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ_abcdefghijklmnopqrstuvwxyz",
genStr = sequenceGenerator({headAlpha: alpha, tailAlpha: alpha});
console.log("--- first string:");
console.log(genStr.getString(0n));
console.log("--- 1e+57");
console.log(genStr.getString(BigInt(1e+57)));
console.log("--- end of first supercycle:");
console.log(genStr.getString(63n*(1n-(63n**63n))/(1n-63n)-1n));
console.log("--- start of second supercycle:");
console.log(genStr.getString(63n*(1n-(63n**63n))/(1n-63n)));

DNA subsequence dynamic programming question

I'm trying to solve DNA problem which is more of improved(?) version of LCS problem.
In the problem, there is string which is string and semi-substring which allows part of string to have one or no letter skipped. For example, for string "desktop", it has semi-substring {"destop", "dek", "stop", "skop","desk","top"}, all of which has one or no letter skipped.
Now, I am given two DNA strings consisting of {a,t,g,c}. I"m trying to find longest semi-substring, LSS. and if there is more than one LSS, print out the one in the fastest order.
For example, two dnas {attgcgtagcaatg, tctcaggtcgatagtgac} prints out "tctagcaatg"
and aaaattttcccc, cccgggggaatatca prints out "aattc"
I'm trying to use common LCS algorithm but cannot solve it with tables although I did solve the one with no letter skipped. Any advice?
This is a variation on the dynamic programming solution for LCS, written in Python.
First I'm building up a Suffix Tree for all the substrings that can be made from each string with the skip rule. Then I'm intersecting the suffix trees. Then I'm looking for the longest string that can be made from that intersection tree.
Please note that this is technically O(n^2). Its worst case is when both strings are the same character, repeated over and over again. Because you wind up with a lot of what logically is something like, "an 'l' at position 42 in the one string could have matched against position l at position 54 in the other". But in practice it will be O(n).
def find_subtree (text, max_skip=1):
tree = {}
tree_at_position = {}
def subtree_from_position (position):
if position not in tree_at_position:
this_tree = {}
if position < len(text):
char = text[position]
# Make sure that we've populated the further tree.
subtree_from_position(position + 1)
# If this char appeared later, include those possible matches.
if char in tree:
for char2, subtree in tree[char].iteritems():
this_tree[char2] = subtree
# And now update the new choices.
for skip in range(max_skip + 1, 0, -1):
if position + skip < len(text):
this_tree[text[position + skip]] = subtree_from_position(position + skip)
tree[char] = this_tree
tree_at_position[position] = this_tree
return tree_at_position[position]
subtree_from_position(0)
return tree
def find_longest_common_semistring (text1, text2):
tree1 = find_subtree(text1)
tree2 = find_subtree(text2)
answered = {}
def find_intersection (subtree1, subtree2):
unique = (id(subtree1), id(subtree2))
if unique not in answered:
answer = {}
for k, v in subtree1.iteritems():
if k in subtree2:
answer[k] = find_intersection(v, subtree2[k])
answered[unique] = answer
return answered[unique]
found_longest = {}
def find_longest (tree):
if id(tree) not in found_longest:
best_candidate = ''
for char, subtree in tree.iteritems():
candidate = char + find_longest(subtree)
if len(best_candidate) < len(candidate):
best_candidate = candidate
found_longest[id(tree)] = best_candidate
return found_longest[id(tree)]
intersection_tree = find_intersection(tree1, tree2)
return find_longest(intersection_tree)
print(find_longest_common_semistring("attgcgtagcaatg", "tctcaggtcgatagtgac"))
Let g(c, rs, rt) represent the longest common semi-substring of strings, S and T, ending at rs and rt, where rs and rt are the ranked occurences of the character, c, in S and T, respectively, and K is the number of skips allowed. Then we can form a recursion which we would be obliged to perform on all pairs of c in S and T.
JavaScript code:
function f(S, T, K){
// mapS maps a char to indexes of its occurrences in S
// rsS maps the index in S to that char's rank (index) in mapS
const [mapS, rsS] = mapString(S)
const [mapT, rsT] = mapString(T)
// h is used to memoize g
const h = {}
function g(c, rs, rt){
if (rs < 0 || rt < 0)
return 0
if (h.hasOwnProperty([c, rs, rt]))
return h[[c, rs, rt]]
// (We are guaranteed to be on
// a match in this state.)
let best = [1, c]
let idxS = mapS[c][rs]
let idxT = mapT[c][rt]
if (idxS == 0 || idxT == 0)
return best
for (let i=idxS-1; i>=Math.max(0, idxS - 1 - K); i--){
for (let j=idxT-1; j>=Math.max(0, idxT - 1 - K); j--){
if (S[i] == T[j]){
const [len, str] = g(S[i], rsS[i], rsT[j])
if (len + 1 >= best[0])
best = [len + 1, str + c]
}
}
}
return h[[c, rs, rt]] = best
}
let best = [0, '']
for (let c of Object.keys(mapS)){
for (let i=0; i<(mapS[c]||[]).length; i++){
for (let j=0; j<(mapT[c]||[]).length; j++){
let [len, str] = g(c, i, j)
if (len > best[0])
best = [len, str]
}
}
}
return best
}
function mapString(s){
let map = {}
let rs = []
for (let i=0; i<s.length; i++){
if (!map[s[i]]){
map[s[i]] = [i]
rs.push(0)
} else {
map[s[i]].push(i)
rs.push(map[s[i]].length - 1)
}
}
return [map, rs]
}
console.log(f('attgcgtagcaatg', 'tctcaggtcgatagtgac', 1))
console.log(f('aaaattttcccc', 'cccgggggaatatca', 1))
console.log(f('abcade', 'axe', 1))

Android Kotlin replace while with for next loop

We have a HashMap Integer/String and in Java we would iterate over the HashMap and display 3 key value pairs at a time with the click of a button. Java Code Below
hm.put(1, "1");
hm.put(2, "Dwight");
hm.put(3, "Lakeside");
hm.put(4, "2");
hm.put(5, "Billy");
hm.put(6, "Georgia");
hm.put(7, "3");
hm.put(8, "Sam");
hm.put(9, "Canton");
hm.put(10, "4");
hm.put(11, "Linda");
hm.put(12, "North Canton");
hm.put(13, "5");
hm.put(14, "Lisa");
hm.put(15, "Phoenix");
onNEXT(null);
public void onNEXT(View view){
etCity.setText("");
etName.setText("");
etID.setText("");
X = X + 3;
for(int L = 1; L <= X; L++ ){
String id = hm.get(L);
String name = hm.get(L = L + 1);
String city = hm.get(L = L + 1);
etID.setText(id);
etName.setText(name);
etCity.setText(city);
}
if(X == hm.size()){
X = 0;
}
}
We decoded to let Android Studio convert the above Java Code to Kotlin
The converter decide to change the for(int L = 1; L <= X; L++) loop to a while loop which seemed OK at first then we realized the while loop was running for 3 loops with each button click. Also Kotlin complained a lot about these line of code String name = hm.get(L = L + 1); String city = hm.get(L = L + 1);
We will post the Kotlin Code below and ask the question
fun onNEXT(view: View?) {
etCity.setText("")
etName.setText("")
etID.setText("")
X = X + 3
var L = 0
while (L <= X) {
val id = hm[L - 2]
val name = hm.get(L - 1)
val city = hm.get(L)
etID.setText(id)
etName.setText(name)
etCity.setText(city)
L++
}
if (X == hm.size) {
X = 0
}
}
We tried to write a For Next Loop like this for (L in 15 downTo 0 step 1)
it seems you can not count upTo so we thought we would use the hm:size for the value 15 and just use downTo
So the questions are
How do we use the Kotlin For Next Loop syntax and include the hm:size in the construct?
We have L declared as a integer but Kotlin will not let us use
L = L + 1 in the While loop nor the For Next Loop WHY ?
HERE is the strange part notice we can increment X by using X = X + 3
YES X was declared above as internal var X = 0 as was L the same way
Okay, I'll bite.
The following code will print your triples:
val hm = HashMap<Int, String>()
hm[1] = "1"
hm[2] = "Dwight"
hm[3] = "Lakeside"
hm[4] = "2"
hm[5] = "Billy"
hm[6] = "Georgia"
hm[7] = "3"
hm[8] = "Sam"
hm[9] = "Canton"
hm[10] = "4"
hm[11] = "Linda"
hm[12] = "North Canton"
hm[13] = "5"
hm[14] = "Lisa"
hm[15] = "Phoenix"
for (i in 1..hm.size step 3) {
println(Triple(hm[i], hm[i + 1], hm[i + 2]))
}
Now let's convert the same idea into a function:
var count = 0
fun nextTriplet(hm: HashMap<Int, String>): Triple<String?, String?, String?> {
val result = mutableListOf<String?>()
for (i in 1..3) {
result += hm[(count++ % hm.size) + 1]
}
return Triple(result[0], result[1], result[2])
}
We used a far from elegant set of code to accomplish an answer to the question.
We used a CharArray since Grendel seemed OK with that concept of and Array
internal var YY = 0
val CharArray = arrayOf(1, "Dwight", "Lakeside",2,"Billy","Georgia",3,"Sam","Canton")
In the onCreate method we loaded the first set of data with a call to onCO(null)
Here is the working code to iterate over the CharArray that was used
fun onCO(view: View?){
etCity.setText("")
etName.setText("")
etID.setText("")
if(CharArray.size > YY){
val id = CharArray[YY]
val name = CharArray[YY + 1]
val city = CharArray[YY + 2]
etID.setText(id.toString())
etName.setText(name.toString())
etCity.setText(city.toString())
YY = YY + 3
}else{
YY = 0
val id = CharArray[YY]
val name = CharArray[YY + 1]
val city = CharArray[YY + 2]
etID.setText(id.toString())
etName.setText(name.toString())
etCity.setText(city.toString())
YY = YY + 3
}
Simple but not elegant. Seems the code is a better example of a counter than iteration.
Controlling the For Next Look may involve less lines of code. Control of the look seemed like the wrong direction. We might try to use the KEY WORD "when" to apply logic to this question busy at the moment
After some further research here is a partial answer to our question
This code only show how to traverse a hash map indexing this traverse every 3 records needs to be added to make the code complete. This answer is for anyone who stumbles upon the question. The code and a link to the resource is provide below
fun main(args: Array<String>) {
val map = hashMapOf<String, Int>()
map.put("one", 1)
map.put("two", 2)
for ((key, value) in map) {
println("key = $key, value = $value")
}
}
The link will let you try Kotlin code examples in your browser
LINK
We only did moderate research before asking this question. Our Appoligies. If anyone is starting anew with Kotlin this second link may be of greater value. We seldom find understandable answers in the Android Developers pages. The Kotlin and Android pages are beginner friendlier and not as technical in scope. Enjoy the link
Kotlin and Android

Collect partial results from parallel streams

In Java8, processing pairs of items in two parallel streams as below:
final List<Item> items = getItemList();
final int l = items.size();
List<String> results = Collections.synchronizedList(new ArrayList<String>());
IntStream.range(0, l - 1).parallel().forEach(
i -> {
Item item1 = items.get(i);
int x1 = item1.x;
IntStream.range(i + 1, l).parallel()
.forEach(j -> {
Item item2 = items.get(j);
int x2 = item2.x;
if (x1 + x2 < 200) return;
// code that writes to ConcurrentHashMap defined near results
if (x1 + x2 > 500) results.add(i + " " + j);
});
}
);
Each stream pair writes to ConcurrentHashMap, and depending on certain conditions it may terminate the stream execution by calling return; or it may write to a synchronized list.
I want to make streams return the results like return i + " " + j and collect those results into a list strings outside. It should be partial as returning nothing must be supported (in case when x1 + x2 < 200).
What would be the most time-efficient (fastest code) way to achieve that?
In this answer, I will not address the time efficiency, because there are correctness problems that should be handled beforehand.
As I said in the comments, it is not possible to stop the stream execution after a certain condition if we parallelize the stream. Otherwise, there might be some pairs (i,j) that are already being executed that are numerically after a pair that triggered the stop condition x1 + x2 < 200.
Another issue is the return; inside the lambda, all it will do is skip the second if for the j for which x1 + x2 < 200 holds, but the stream will continue with j+1.
There is no straightforward way to stop a stream in Java, but we can achieve that with allMatch, as we can expect that as soon as it finds a false value, it will short-circuit and return false right way.
So, this would be a correct version of your code:
IntStream.range(0, l - 1).allMatch(i -> {
int x1 = items.get(i).x;
return IntStream.range(i + 1, l).allMatch(j -> {
int x2 = items.get(j).x;
if (x1 + x2 < 200) {
return false;
} else {
if (x1 + x2 > 500) results2.add(i + " " + j);
return true;
}
});
});
For the following example, with the constructor Item(int x, int y):
final List<Item> items = Arrays.asList(
new Item(200, 0),
new Item(100, 0),
new Item(500, 0),
new Item(400, 0),
new Item(1, 0));
The contents of results in my version is:
[0 2, 0 3, 1 2]
With your code (order and elements vary in each execution):
[2 4, 2 3, 1 2, 0 3, 0 2]
I think this will be more efficient (haven't done any micro benchmarking though):
IntStream.range(0,l-1).forEach(
i -> IntStream.range(i+1,l)
.filter(j -> items.get(i).x + items.get(j).x > 500)
.forEach(j -> results.add(i + " " + j)));
However, if I was really worried about the time taken to do this, I'd pay more attention to what kind of a List implementation is used for items. Perhaps even convert the list to a HashMap<Integer, Item> before getting into the lambda. For example, if items is a LinkedList, any improvement to the lambda may be inconsequential because items.get() will eat up all the time.

TestComplete cannot find an object by 2 properties

I have a problem with how TestComplete finds objects by two properties
I find all objects by some property 1 and value 1, then select those having property 2 equal to value 2, get 6 objects
Then I find all objects by property 2 and value 2, then select those having property 1 equal to value 1, again get 6 objects
Then pass to FindAll both properties and get zero objects
var p1 = "NewActionList"
var p2 = "titleBar"
var x1 = Sys["FindAll"](["NativeSlObject.Parent.Name.OleValue"], [p1], 100)
var x2 = Sys["FindAll"](["Parent.NativeSlObject.Parent.Parent.Name.OleValue"], [p2], 100)
x1 = new VBArray(x1).toArray()
x2 = new VBArray(x2).toArray()
for (var i = 0; i < x1.length; i++)
{
if (x1[i].Parent.NativeSlObject.Parent.Parent.Name.OleValue == p2)
{
Log["Message"]("x1")
}
}
for (var i = 0; i < x2.length; i++)
{
if (x2[i].NativeSlObject.Parent.Name.OleValue == p1)
{
Log["Message"]("x2")
}
}
var x = Sys["FindAll"](["NativeSlObject.Parent.Name.OleValue", "Parent.NativeSlObject.Parent.Parent.Name.OleValue"], [p1, p2], 100)
x = new VBArray(x).toArray()
Log["Message"](x.length)
Get x1 six times, x2 six times, and 0
FindAll is searching for one object which will have both parameters you specified:
ativeSlObject.Parent.Name.OleValue = p1
and
Parent.NativeSlObject.Parent.Parent.Name.OleValue = p2
Do you have the object with such properties in the object tree?
I think that such search can be rather slow even if it works. I recommend that you search for the desired objects in several steps using a simpler search criteria.
Also, you can find it easier to use the Name Mapping functionality along with its Required Children and Extended Find features.

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