How to parallelize integrating in Mathematica 8 - parallel-processing

Somebody have idea how to use all cores for calculating integration? I need to use parallelize or parallel table but how?
f[r_] := Sum[(((-1)^n*(2*r - 2*n - 7)!!)/(2^n*n!*(r - 2*n - 1)!))*
x^(r - 2*n - 1), {n, 0, r/2}];
Nw := Transpose[Table[f[j], {i, 1}, {j, 5, 200, 1}]];
X1 = Integrate[Nw . Transpose[Nw], {x, -1, 1}];
Y1 = Integrate[D[Nw, {x, 2}] . Transpose[D[Nw, {x, 2}]], {x, -1, 1}];
X1//MatrixForm
Y1//MatrixForm

I changed the integration of a list into a list of integrations so that I can use ParallelTable:
X1par=ParallelTable[Integrate[i, {x, -1, 1}], {i, Nw.Transpose[Nw]}];
X1par==X1
(* ===> True *)
Y1par = ParallelTable[Integrate[i,{x,-1,1}],{i,D[Nw,{x,2}].Transpose[D[Nw,{x,2}]]}]
Y1 == Y1par
(* ===> True *)
In my timings, with {j, 5, 30, 1} instead of {j, 5, 200, 1} to restrict the time used somewhat, this is about 3.4 times faster on my quod-core. But it can be done even faster with:
X2par = Parallelize[Integrate[#, {x, -1, 1}] & /# (Nw.Transpose[Nw])]
X2par == X1par == X1
(* ===> True *)
This is about 6.8 times faster, a factor of 2.3 of which is due to Parallelize.
Timing and AbsoluteTiming are not very trustworthy when parallel execution is concerned. I used AbsoluteTime before and after each line and took the difference.
EDIT
We shouldn't forget ParallelMap:
At the coarsest list level (1):
ParallelMap[Integrate[#, {x, -1, 1}] &, Nw.Transpose[Nw], {1}]
At the deepest list level (most fine-grained parallelization):
ParallelMap[Integrate[#, {x, -1, 1}] &, Nw.Transpose[Nw], {2}]

If one helps Integrate a bit by expanding the matrix elements first,
things are doable with a little bit of effort.
On a quad-core laptop with Windows and Mathematica 8.0.4 the following code below runs
for the asked DIM=200 in about 13 minutes,
for DIM=50 the code runs in 6 second.
$starttime = AbsoluteTime[]; Quiet[LaunchKernels[]];
DIM = 200;
Print["$Version = ", $Version, " ||| ", "Number of Kernels : ", Length[Kernels[]]];
f[r_] := f[r] = Sum[(((-1)^n*(-(2*n) + 2*r - 7)!!)*x^(-(2*n) + r - 1))/(2^n*n!*(-(2*n) + r - 1)!), {n, 0, r/2}];
Nw = Transpose[Table[f[j], {i, 1}, {j, 5, DIM, 1}]];
nw2 = Nw . Transpose[Nw];
Print["Seconds for expanding Nw.Transpose[Nm] ", Round[First[AbsoluteTiming[nw3 = ParallelMap[Expand, nw2]; ]]]];
Print["do the integral once: ", Integrate[x^n, {x, -1, 1}, Assumptions -> n > -1]];
Print["the integration can be written as a simple rule: ", intrule = (pol_Plus)?(PolynomialQ[#1, x] & ) :>
(Select[pol, !FreeQ[#1, x] & ] /. x^(n_.) /; n > -1 :> ((-1)^n + 1)/(n + 1)) + 2*(pol /. x -> 0)];
Print["Seconds for integrating Nw.Transpose[Nw] : ", Round[First[AbsoluteTiming[X1 = ParallelTable[row /. intrule, {row, nw3}]; ]]]];
Print["expanding: ", Round[First[AbsoluteTiming[preY1 = ParallelMap[Expand, D[Nw, {x, 2}] . Transpose[D[Nw, {x, 2}]]]; ]]]];
Print["Seconds for integrating : ", Round[First[AbsoluteTiming[Y1 = ParallelTable[py /. intrule, {py, preY1}]; ]]]];
Print["X1 = ", (Shallow[#1, {4, 4}] & )[X1]];
Print["Y1 = ", (Shallow[#1, {4, 4}] & )[Y1]];
Print["seq Y1 : ", Simplify[FindSequenceFunction[Diagonal[Y1], n]]];
Print["seq X1 0 : ",Simplify[FindSequenceFunction[Diagonal[X1, 0], n]]];
Print["seq X1 2: ",Simplify[FindSequenceFunction[Diagonal[X1, 2], n]]];
Print["seq X1 4: ",Simplify[FindSequenceFunction[Diagonal[X1, 4], n]]];
Print["overall time needed in seconds: ", Round[AbsoluteTime[] - $starttime]];

Related

Ploting implicit variable of Nonanalytic Equation

I have a non-analytical equation. I could solve for different values of parameters but my program is not working at all. At the end i want to plot y vs x
f[x_] := y + Sqrt[3 + x*y - x^20 - y^4]
Table[f[x], {x, 0.1, 0.5, 0.1}]
NSolve[f[x] == 0, y]
f[x_] := y + Sqrt[3 + x*y - x^20 - y^4]
sol = Solve[f[x] == 0, y];
x0 = Table[i, {i, 0.1, 0.5, 0.1}];
subs = N[sol /. x -> #] & /# x0
This creates results from which we can see that the first and second solutions produce complex numbers. Plotting the two real solutions first.
y3 = subs[[All, 3, 1, 2]];
y4 = subs[[All, 4, 1, 2]];
ListLinePlot[{Transpose[{x0, y3}], Transpose[{x0, y4}]}]
Alternatively the plot can be produced from the solutions with
Plot[{sol[[3, 1, 2]], sol[[4, 1, 2]]}, {x, 0.1, 0.5}]
The complex solutions can be plotted like so:
ParametricPlot[{{Re[sol[[1, 1, 2]]], Im[sol[[1, 1, 2]]]},
{Re[sol[[2, 1, 2]]], Im[sol[[2, 1, 2]]]}}, {x, 0, Pi/2}]

How to make code for sum of 2 integrals in Mathematica

I am trying to quickly solve the following problem:
f[r_] := Sum[(((-1)^n (2 r - 2 n - 7)!!)/(2^n n! (r - 2 n - 1)!))
* x^(r - 2*n - 1),
{n, 0, r/2}];
Nw := Transpose[Table[f[j], {i, 1}, {j, 5, 200, 1}]];
X1 = Integrate[Nw . Transpose[Nw], {x, -1, 1}]
I can get the answer quickly with this code:
$starttime = AbsoluteTime[]; Quiet[LaunchKernels[]];
DIM = 50;
Print["$Version = ", $Version, " ||| ",
"Number of Kernels : ", Length[Kernels[]]];
Nw = Transpose[Table[f[j], {i, 1}, {j, 5, DIM, 1}]];
nw2 = Nw.Transpose[Nw];
Round[First[AbsoluteTiming[nw3 = ParallelMap[Expand, nw2]; ]]]
intrule = (pol_Plus)?(PolynomialQ[#1, x]&) :>
(Select[pol, !FreeQ[#1, x] & ] /.
x^(n_.) /; n > -1 :> ((-1)^n + 1)/(n + 1)) + 2*(pol /. x -> 0)]);
Round[First[AbsoluteTiming[X1 = ParallelTable[row /. intrule, {row, nw3}]; ]]]
X1
Print["overall time needed in seconds: ", Round[AbsoluteTime[] - $starttime]];
But how can I manage this code if I need to solve the following problem, where a and b are known constants?
X1 = a Integrate[Nw.Transpose[Nw], {x, -1, 0.235}]
+ b Integrate[Nw.Transpose[Nw], {x, 0.235,1}];
Here's a simple function to do definite integrals of polynomials
polyIntegrate[expr_List, {x_, x0_, x1_}] := polyIntegrate[#, {x, x0, x1}]&/#expr
polyIntegrate[expr_, {x_, x0_, x1_}] := Check[Total[#
Table[(x1^(1 + n) - x0^(1 + n))/(1 + n), {n, 0, Length[#] - 1}]
]&[CoefficientList[expr, x]], $Failed, {General::poly}]
On its range of applicability, this is about 100 times faster than using Integrate. This should be fast enough for your problem. If not, then it could be parallelized.
f[r_] := Sum[(((-1)^n*(2*r - 2*n - 7)!!)/(2^n*n!*(r - 2*n - 1)!))*
x^(r - 2*n - 1), {n, 0, r/2}];
Nw = Transpose[Table[f[j], {i, 1}, {j, 5, 50, 1}]];
a*polyIntegrate[Nw.Transpose[Nw], {x, -1, 0.235}] +
b*polyIntegrate[Nw.Transpose[Nw], {x, 0.235, 1}] // Timing // Short
(* Returns: {7.9405,{{0.0097638 a+0.00293462 b,<<44>>,
-0.0000123978 a+0.0000123978 b},<<44>>,{<<1>>}}} *)

how to generate a plot of planar Cantor set in mathematica

I am wondering if anyone can help me to plot the Cantor dust on the plane in Mathematica. This is linked to the Cantor set.
Thanks a lot.
EDIT
I actually wanted to have something like this:
Here's a naive and probably not very optimized way of reproducing the graphics for the ternary Cantor set construction:
cantorRule = Line[{{a_, n_}, {b_, n_}}] :>
With[{d = b - a, np = n - .1},
{Line[{{a, np}, {a + d/3, np}}], Line[{{b - d/3, np}, {b, np}}]}]
Graphics[{CapForm["Butt"], Thickness[.05],
Flatten#NestList[#/.cantorRule&, Line[{{0., 0}, {1., 0}}], 6]}]
To make Cantor dust using the same replacement rules, we take the result at a particular level, e.g. 4:
dust4=Flatten#Nest[#/.cantorRule&,Line[{{0.,0},{1.,0}}],4]/.Line[{{a_,_},{b_,_}}]:>{a,b}
and take tuples of it
dust4 = Transpose /# Tuples[dust4, 2];
Then we just plot the rectangles
Graphics[Rectangle ### dust4]
Edit: Cantor dust + squares
Changed specs -> New, but similar, solution (still not optimized).
Set n to be a positive integer and choice any subset of 1,...,n then
n = 3; choice = {1, 3};
CanDChoice = c:CanD[__]/;Length[c]===n :> CanD[c[[choice]]];
splitRange = {a_, b_} :> With[{d = (b - a + 0.)/n},
CanD##NestList[# + d &, {a, a + d}, n - 1]];
cantLevToRect[lev_]:=Rectangle###(Transpose/#Tuples[{lev}/.CanD->Sequence,2])
dust = NestList[# /. CanDChoice /. splitRange &, {0, 1}, 4] // Rest;
Graphics[{FaceForm[LightGray], EdgeForm[Black],
Table[cantLevToRect[lev], {lev, Most#dust}],
FaceForm[Black], cantLevToRect[Last#dust /. CanDChoice]}]
Here's the graphics for
n = 7; choice = {1, 2, 4, 6, 7};
dust = NestList[# /. CanDChoice /. splitRange &, {0, 1}, 2] // Rest;
and everything else the same:
Once can use the following approach. Define cantor function:
cantorF[r:(0|1)] = r;
cantorF[r_Rational /; 0 < r < 1] :=
Module[{digs, scale}, {digs, scale} = RealDigits[r, 3];
If[! FreeQ[digs, 1],
digs = Append[TakeWhile[Most[digs]~Join~Last[digs], # != 1 &], 1];];
FromDigits[{digs, scale}, 2]]
Then form the dust by computing differences of F[n/3^k]-F[(n+1/2)/3^k]:
With[{k = 4},
Outer[Times, #, #] &[
Table[(cantorF[(n + 1/2)/3^k] - cantorF[(n)/3^k]), {n, 0,
3^k - 1}]]] // ArrayPlot
I like recursive functions, so
cantor[size_, n_][pt_] :=
With[{s = size/3, ct = cantor[size/3, n - 1]},
{ct[pt], ct[pt + {2 s, 0}], ct[pt + {0, 2 s}], ct[pt + {2 s, 2 s}]}
]
cantor[size_, 0][pt_] := Rectangle[pt, pt + {size, size}]
drawCantor[n_] := Graphics[cantor[1, n][{0, 0}]]
drawCantor[5]
Explanation: size is the edge length of the square the set fits into. pt is the {x,y} coordinates of it lower left corner.

Mathematica Interpolation[] that remains constant when outside range

I want to "modify" Mathematica's Interpolation[] function (in 1
dimension) by replacing extrapolation with constant values when the
input is out of range.
In other words, if the interpolation domain is [1,20] and f[1]==7 and
f[20]==12, I want:
f[x] = 7 for x<=1
f[x] = 12 for x>=20
f[x] = Interpolation[...]
However, this fails:
(* interpolation w cutoff *)
interpcut[r_] := Module[{s, minpair, maxpair},
(* sort array by x coord *)
s = Sort[r, #1[[1]] < #2[[1]] &];
(* find min x value and corresponding y value *)
minpair = s[[1]];
(* ditto for max x value *)
maxpair = s[[-1]];
(* return the pure function representing cutoff interpolation *)
Piecewise[{
{minpair[[2]] &, #1 < minpair[[1]] &},
{maxpair[[2]] &, #1 > maxpair[[1]] &},
{Interpolation[r], True}
}]]
test = Table[{x,Prime[x]},{x,1,10}]
InputForm[interpcut[test]]
Piecewise[{{minpair$59[[2]] & , #1 < minpair$59[[1]] & },
{maxpair$59[[2]] & , #1 > maxpair$59[[1]] & }},
InterpolatingFunction[{{1, 10}}, {3, 1, 0, {10}, {4}, 0, 0, 0, 0},
{{1, 2, 3, 4, 5, 6, 7, 8, 9, 10}}, {{2}, {3}, {5}, {7}, {11}, {13}, {17},
{19}, {23}, {29}}, {Automatic}]]
I'm sure I'm missing something basic. What?
Function definition
interpcut[r_, x_] :=
Module[{s},(*sort array by x coord*)
s = SortBy[r, First];
Piecewise[
{{First[s][[2]], x < First[s][[1]]},
{Last [s][[2]], x > Last [s][[1]]},
{Interpolation[r][x], True}}]];
Test
test = Table[{x, Prime[x]}, {x, 1, 10}];
f[x_] := interpcut[test, x]
Plot[f[x], {x, -10, 30}]
Edit
Answering your comment about pure functions.
I did it that way just for clarity, not for cheating. For using pure functions just "follow the recipe":
interpcut[r_] := Module[{s},
s = SortBy[r, First];
Function[Piecewise[
{{First[s][[2]], # < First[s][[1]]},
{Last [s][[2]], # > Last [s][[1]]},
{Interpolation[r][#], True}}]]
]
test = Table[{x, Prime[x]}, {x, 1, 10}];
f = interpcut[test] // InputForm
Plot[interpcut[test][x], {x, -10, 30}]
Let me add an update to this old thread. Since V9 you can use native (but still experimental) "ExtrapolationHandler" parameter
test = Table[{x, Prime[x]}, {x, 1, 10}];
g = Interpolation[test, "ExtrapolationHandler" ->
{If[# <= test[[1, 1]], test[[1, 2]], test[[-1, 2]]] &,
"WarningMessage" -> False}];
Plot[g[x], {x, -10, 30}]
Here's a possible alternative to belisarius's answer:
interpcut[r_] := Module[{s}, s = SortBy[r, First];
Composition[Interpolation[r], Clip[#, Map[First, Through[{First, Last}[s]]]] &]]

in mathematica, how to make initial condition as a variable in ndsolve?

i'd like to have something like this
w[w1_] :=
NDSolve[{y''[x] + y[x] == 2, y[0] == w1, y'[0] == 0}, y, {x, 0, 30}]
this seems like it works better but i think i'm missing smtn
w := NDSolve[{y''[x] + y[x] == 2, y[0] == w1, y'[0] == 0},
y, {x, 0, 30}]
w2 = Table[y[x] /. w, {w1, 0.0, 1.0, 0.5}]
because when i try to make a table, it doesn't work:
Table[Evaluate[y[x] /. w2], {x, 10, 30, 10}]
i get an error:
ReplaceAll::reps: {<<1>>[x]} is neither a list of replacement rules nor a valid dispatch table, and so cannot be used for replacing. >>
ps: is there a better place to ask questions like that? mathematica doesn't have supported forums and only has mathGroup e-mail list. it would be nice if stackoverflow would have more specific mathematica tags like simplify, ndsolve, plot manipulation
There are a lot of ways to do that. One is:
w[w1_] := NDSolve[{y''[x] + y[x] == 2,
y'[0] == 0}, y[0] == w1,
y[x], {x, 0, 30}];
Table[Table[{w1,x,y[x] /. w[w1]}, {w1, 0., 1.0, 0.5}]/. x -> u, {u, 10, 30, 10}]
Output:
{{{0., 10, {3.67814}}, {0.5, 10, {3.25861}}, {1.,10, {2.83907}}},
{{0., 20, {1.18384}}, {0.5, 20, {1.38788}}, {1.,20, {1.59192}}},
{{0., 30, {1.6915}}, {0.5, 30, {1.76862}}, {1.,30, {1.84575}}}}
I see you already chose an answer, but I want to toss this solution for families of linear equations up. Specifically, this is to model a slight variation on Lotka-Volterra.
(*Put everything in a module to scope x and y correctly.*)
Module[{x, y},
(*Build a function to wrap NDSolve, and pass it
the initial conditions and range.*)
soln[iCond_, tRange_, scenario_] :=
NDSolve[{
x'[t] == -scenario[[1]] x[t] + scenario[[2]] x[t]*y[t],
y'[t] == (scenario[[3]] - scenario[[4]]*y[t]) -
scenario[[5]] x[t]*y[t],
x[0] == iCond[[1]],
y[0] == iCond[[2]]
},
{x[t], y[t]},
{t, tRange[[1]], tRange[[2]]}
];
(*Build a plot generator*)
GeneratePlot[{iCond_, tRange_, scen_,
window_}] :=
(*Find a way to catch errors and perturb iCond*)
ParametricPlot[
Evaluate[{x[t], y[t]} /. soln[iCond, tRange, scen]],
{t, tRange[[1]], tRange[[2]]},
PlotRange -> window,
PlotStyle -> Thin, LabelStyle -> Medium
];
(*Call the plot generator with different starting conditions*)
graph[scenario_, tRange_, window_, points_] :=
{plots = {};
istep = (window[[1, 2]] - window[[1, 1]])/(points[[1]]+1);
jstep = (window[[2, 2]] - window[[2, 1]])/(points[[2]]+1);
Do[Do[
AppendTo[plots, {{i, j}, tRange, scenario, window}]
, {j, window[[2, 1]] + jstep, window[[2, 2]] - jstep, jstep}
], {i, window[[1, 1]] + istep, window[[1, 2]] - istep, istep}];
Map[GeneratePlot, plots]
}
]
]
We can then use Animate (or table, but animate is awesome)
tRange = {0, 4};
window = {{0, 8}, {0, 6}};
points = {5, 5}
Animate[Show[graph[{3, 1, 8, 2, 0.5},
{0, t}, window, points]], {t, 0.01, 5},
AnimationRunning -> False]

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