Why does Spring Data JPA break previously working persistence.xml file? - spring

I am attempting to add Spring Data JPA to my project so I can leverage the Repositories interface.
Steps taken - ApplicationContext.xml:
Added xmlns:jpa="http://www.springframework.org/schema/data/jpa" to the tag of my applicationContext.xml file.
Added http://www.springframework.org/schema/data/jpa http://www.springframework.org/schema/data/jpa/spring-jpa-1.0.xsd to the xsi:schemaLocation definition in the tag of my applicationContext.xml file
Added <jpa:repositories base-package="com.myproject.persistence" /> as a child of the tag of my applicationContext.xml file
Steps taken - POM
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-jpa</artifactId>
<version>1.0.3.RELEASE</version>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
This has the effect that my server complains about a previously fine persistence.xml configuration:
org.xml.sax.SAXParseException; lineNumber: 2; columnNumber: 248; cvc-complex-type.3.1: Value '2.0' of attribute 'version' of element 'persistence' is not valid with respect to the corresponding attribute use. Attribute 'version' has a fixed value of '1.0'.
Why would adding Spring Data JPA suddenly try and regress JPA back to 1.0?!
Full POM follows.
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com</groupId>
<artifactId>myproject</artifactId>
<packaging>war</packaging>
<version>0.1.0.BUILD-SNAPSHOT</version>
<name>myproject</name>
<properties>
<aspectj.version>1.6.12</aspectj.version>
<java.version>6</java.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<roo.version>1.2.1.RELEASE</roo.version>
<slf4j.version>1.6.4</slf4j.version>
<spring.version>3.1.0.RELEASE</spring.version>
</properties>
<repositories>
<repository>
<id>spring-maven-release</id>
<name>Spring Maven Release Repository</name>
<url>http://maven.springframework.org/release</url>
</repository>
<repository> <id>spring-maven-milestone</id> <name>Spring Maven Milestone
Repository</name> <url>http://maven.springframework.org/milestone</url>
</repository>
<repository>
<id>spring-roo-repository</id>
<name>Spring Roo Repository</name>
<url>http://spring-roo-repository.springsource.org/release</url>
</repository>
<repository>
<id>java.net.m2</id>
<url>http://download.java.net/maven/2</url>
</repository>
<repository>
<id>prime-repo</id>
<url>http://repository.primefaces.org</url>
<name>PrimeFaces Maven Repository</name>
</repository>
<repository>
<id>JBoss Repo</id>
<url>https://repository.jboss.org/nexus/content/repositories/releases</url>
<name>JBoss Repo</name>
</repository>
</repositories>
<pluginRepositories>
<pluginRepository>
<id>spring-maven-release</id>
<name>Spring Maven Release Repository</name>
<url>http://maven.springframework.org/release</url>
</pluginRepository>
<pluginRepository>
<id>spring-maven-milestone</id>
<name>Spring Maven Milestone Repository</name>
<url>http://maven.springframework.org/milestone</url>
</pluginRepository>
<pluginRepository>
<id>spring-roo-repository</id>
<name>Spring Roo Repository</name>
<url>http://spring-roo-repository.springsource.org/release</url>
</pluginRepository>
</pluginRepositories>
<dependencies>
<!-- General dependencies for standard applications -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.16</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjrt</artifactId>
<version>${aspectj.version}</version>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjweaver</artifactId>
<version>${aspectj.version}</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.5</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.inject</groupId>
<artifactId>javax.inject</artifactId>
<version>1</version>
</dependency>
<dependency>
<groupId>net.sf.flexjson</groupId>
<artifactId>flexjson</artifactId>
<version>2.1</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.1</version>
</dependency>
<!-- ROO dependencies -->
<dependency>
<groupId>org.springframework.roo</groupId>
<artifactId>org.springframework.roo.annotations</artifactId>
<version>${roo.version}</version>
<scope>provided</scope>
</dependency>
<!-- Spring dependencies -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${spring.version}</version>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-jpa</artifactId>
<version>1.0.3.RELEASE</version>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${spring.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aop</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aspects</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.18</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>3.6.9.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>3.6.9.Final</version>
<exclusions>
<exclusion>
<groupId>cglib</groupId>
<artifactId>cglib</artifactId>
</exclusion>
<exclusion>
<groupId>dom4j</groupId>
<artifactId>dom4j</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jpa</artifactId>
<version>2.0.8</version>
</dependency>
<dependency>
<groupId>org.hibernate.javax.persistence</groupId>
<artifactId>hibernate-jpa-2.0-api</artifactId>
<version>1.0.1.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<version>4.2.0.Final</version>
<exclusions>
<exclusion>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
</exclusion>
<exclusion>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>javax.validation</groupId>
<artifactId>validation-api</artifactId>
<version>1.0.0.GA</version>
</dependency>
<dependency>
<groupId>cglib</groupId>
<artifactId>cglib-nodep</artifactId>
<version>2.2.2</version>
</dependency>
<dependency>
<groupId>javax.transaction</groupId>
<artifactId>jta</artifactId>
<version>1.1</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jdbc</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>commons-pool</groupId>
<artifactId>commons-pool</artifactId>
<version>1.5.6</version>
</dependency>
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.3</version>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
<exclusion>
<groupId>xml-apis</groupId>
<artifactId>xml-apis</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.sun.faces</groupId>
<artifactId>jsf-api</artifactId>
<version>2.1.2</version>
</dependency>
<dependency>
<groupId>com.sun.faces</groupId>
<artifactId>jsf-impl</artifactId>
<version>2.1.2</version>
</dependency>
<dependency>
<groupId>org.primefaces</groupId>
<artifactId>primefaces</artifactId>
<version>3.2</version>
</dependency>
<dependency>
<groupId>org.primefaces.themes</groupId>
<artifactId>south-street</artifactId>
<version>1.0.3</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>javax.el</groupId>
<artifactId>el-api</artifactId>
<version>2.2</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>commons-fileupload</groupId>
<artifactId>commons-fileupload</artifactId>
<version>1.2.2</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.1</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.13</version>
<classifier />
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>3.6.4.Final</version>
<classifier />
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>3.6.4.Final</version>
<classifier />
<exclusions>
<exclusion>
<groupId>cglib</groupId>
<artifactId>cglib</artifactId>
</exclusion>
<exclusion>
<groupId>dom4j</groupId>
<artifactId>dom4j</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.hibernate.javax.persistence</groupId>
<artifactId>hibernate-jpa-2.0-api</artifactId>
<version>1.0.0.Final</version>
<classifier />
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<version>4.1.0.Final</version>
<classifier />
<exclusions>
<exclusion>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
</exclusion>
<exclusion>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>cglib</groupId>
<artifactId>cglib-nodep</artifactId>
<version>2.2</version>
<classifier />
</dependency>
<dependency>
<groupId>commons-pool</groupId>
<artifactId>commons-pool</artifactId>
<version>1.5.4</version>
<classifier />
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.1.1</version>
<!-- <configuration> <webXml>target/web.xml</webXml> </configuration> -->
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.3.2</version>
<configuration>
<source>${java.version}</source>
<target>${java.version}</target>
<encoding>${project.build.sourceEncoding}</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>aspectj-maven-plugin</artifactId>
<version>1.2</version>
<!-- NB: do not use 1.3 or 1.3.x due to MASPECTJ-90 and do not use 1.4
due to declare parents issue -->
<dependencies>
<!-- NB: You must use Maven 2.0.9 or above or these are ignored (see
MNG-2972) -->
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjrt</artifactId>
<version>${aspectj.version}</version>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjtools</artifactId>
<version>${aspectj.version}</version>
</dependency>
</dependencies>
<executions>
<execution>
<goals>
<goal>compile</goal>
<goal>test-compile</goal>
</goals>
</execution>
</executions>
<configuration>
<outxml>true</outxml>
<aspectLibraries>
<aspectLibrary>
<groupId>org.springframework</groupId>
<artifactId>spring-aspects</artifactId>
</aspectLibrary>
</aspectLibraries>
<source>${java.version}</source>
<target>${java.version}</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.5</version>
<configuration>
<encoding>${project.build.sourceEncoding}</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.9</version>
<configuration>
<printSummary>false</printSummary>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
<excludes>
<exclude>**/*_Roo_*</exclude>
</excludes>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.2.1</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>2.7</version>
</plugin>
<!-- IDE -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-eclipse-plugin</artifactId>
<version>2.7</version>
<!-- Note 2.8 does not work with AspectJ aspect path -->
<configuration>
<downloadSources>true</downloadSources>
<downloadJavadocs>false</downloadJavadocs>
<wtpversion>2.0</wtpversion>
<additionalBuildcommands>
<buildCommand>
<name>org.eclipse.ajdt.core.ajbuilder</name>
<arguments>
<aspectPath>org.springframework.aspects</aspectPath>
</arguments>
</buildCommand>
<buildCommand>
<name>org.springframework.ide.eclipse.core.springbuilder</name>
</buildCommand>
</additionalBuildcommands>
<additionalProjectnatures>
<projectnature>org.eclipse.ajdt.ui.ajnature</projectnature>
<projectnature>com.springsource.sts.roo.core.nature</projectnature>
<projectnature>org.springframework.ide.eclipse.core.springnature</projectnature>
</additionalProjectnatures>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-idea-plugin</artifactId>
<version>2.2</version>
<configuration>
<downloadSources>true</downloadSources>
<dependenciesAsLibraries>true</dependenciesAsLibraries>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>tomcat-maven-plugin</artifactId>
<version>1.1</version>
</plugin>
<plugin>
<groupId>org.mortbay.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
<version>8.0.1.v20110908</version>
<configuration>
<webAppConfig>
<contextPath>/${project.name}</contextPath>
</webAppConfig>
</configuration>
</plugin>
</plugins>
</build>
</project>
Edit: The following persistence providers are among the dependencies for Spring Data JPA. I have added them all to the exclude list for my POM. This does not work!
Following persistence providers specified in Spring Data's POM - have added them all to the exclude list. Still broken.
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>${hibernate.version}</version>
<optional>true</optional>
</dependency>
<dependency>
<groupId>org.eclipse.persistence</groupId>
<artifactId>org.eclipse.persistence.jpa</artifactId>
<version>${eclipselink.version}</version>
<optional>true</optional>
</dependency>
<dependency>
<groupId>org.apache.openjpa</groupId>
<artifactId>openjpa-persistence-jdbc</artifactId>
<version>${openjpa.version}</version>
<optional>true</optional>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
JPA Dependencies according to Eclipse:-

Check whether you don't have another JPA jar on the classpath (either dragged by spring-data, or by some forgotten dependency (hibernate-jpa), or in your application server).

The wrong dependency is with spring-jpa, which implements JPA 1, and takes precedence over your JPA 2 implementation, represented here by hibernate-jpa-2.0-api. You just don't need it since you already have spring-data-jpa and hibernate-jpa-2.0-api. Just remove the spring-jpa dependency from your pom.xml and you should be fine.

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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<version>1.0.0.RELEASE</version>
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<id>smartbear-sweden-plugin-repository</id>
<url>http://www.soapui.org/repository/maven2/</url>
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<repositories>
<repository>
<id>mvn.central.repo</id>
<url>http://repo1.maven.org/maven2/</url>
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<repository>
<id>mvn.repo</id>
<url>http://mvnrepository.com/</url>
</repository>
<repository>
<id>java.net</id>
<url>https://maven.java.net/content/repositories/public/</url>
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<properties>
<java-version>1.8</java-version>
<org.springframework-version>4.3.27.RELEASE</org.springframework-version>
<org.springsecurity-version>4.2.17.RELEASE</org.springsecurity-version>
<org.aspectj-version>1.8.8</org.aspectj-version>
<org.slf4j-version>1.6.6</org.slf4j-version>
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<dependencies>
<!-- Prince dependency <dependency> <groupId>prince</groupId> <artifactId>prince</artifactId>
<version>11.3</version> </dependency -->
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<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
<version>2.6.2</version>
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<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.5</version>
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<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${org.springframework-version}</version>
<exclusions>
<!-- Exclude Commons Logging in favor of SLF4j -->
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
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<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
<version>${org.springframework-version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>${org.springframework-version}</version>
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<!-- javax.xml libraries >
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.4.0-b180830.0359</version>
</dependency>
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-core</artifactId>
<version>2.3.0.1</version>
</dependency>
<dependency>
<groupId>javax.xml</groupId>
<artifactId>jaxb-impl</artifactId>
<version>2.1</version>
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<dependency>
<groupId>javax.activation</groupId>
<artifactId>activation</artifactId>
<version>1.1.1</version>
</dependency>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.3.0</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-core</artifactId>
<version>2.3.0</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
<version>2.3.0</version>
</dependency-->
<!-- AspectJ -->
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjrt</artifactId>
<version>${org.aspectj-version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aop</artifactId>
<version>${org.springframework-version}</version>
</dependency>
<dependency>
<groupId>cglib</groupId>
<artifactId>cglib</artifactId>
<version>2.2.2</version>
</dependency>
<!--Commons codec package contains simple encoder and decoders for various
formats such as Base64 and Hexadecima -->
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.3</version>
</dependency>
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<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${org.slf4j-version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>${org.slf4j-version}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>${org.slf4j-version}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.6</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-io</artifactId>
<version>1.3.2</version>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>apache-log4j-extras</artifactId>
<version>1.2.17</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
<version>2.17.1</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.logging.log4j/log4j-core -->
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
<version>2.17.1</version>
</dependency>
<!-- #Inject -->
<dependency>
<groupId>javax.inject</groupId>
<artifactId>javax.inject</artifactId>
<version>1</version>
</dependency>
<!-- Servlet -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.5</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.servlet.jsp</groupId>
<artifactId>jsp-api</artifactId>
<version>2.1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>commons-net</groupId>
<artifactId>commons-net</artifactId>
<version>3.3</version>
</dependency>
<!-- Test <dependency> <groupId>junit</groupId> <artifactId>junit</artifactId>
<version>4.7</version> <scope>test</scope> </dependency> -->
<dependency>
<groupId>net.sf.ehcache</groupId>
<artifactId>ehcache</artifactId>
<version>2.8.1</version>
</dependency>
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongo-java-driver</artifactId>
<version>3.6.0</version>
<!-- scope>provided</scope-->
</dependency>
<!-- Spring Security -->
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-core</artifactId>
<version>${org.springsecurity-version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-config</artifactId>
<version>${org.springsecurity-version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-web</artifactId>
<version>${org.springsecurity-version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-taglibs</artifactId>
<version>${org.springsecurity-version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-expression</artifactId>
<version>${org.springframework-version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId>
<version>${org.springframework-version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jdbc</artifactId>
<version>${org.springframework-version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>2.7.3</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>2.7.3</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.7.3</version>
</dependency>
<dependency>
<groupId>com.sun.xml.security</groupId>
<artifactId>xml-security-impl</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>redis.clients</groupId>
<artifactId>jedis</artifactId>
<version>2.10.2</version>
</dependency>
</dependencies>
<build>
<resources>
<resource>
<directory>src/main/resources</directory>
<excludes>
<exclude>IS_Dev.properties</exclude>
<exclude>IS_Test.properties</exclude>
<exclude>IS_original.properties</exclude>
<exclude>IS_Prod.properties</exclude>
<exclude>IS.properties</exclude>
<exclude>TalentArchitect.properties</exclude>
<!-- <exclude>log4j.xml</exclude> -->
<exclude>LogResources.properties</exclude>
<exclude>mapping.txt</exclude>
<exclude>JobMatching.properties</exclude>
<exclude>IS_NoILB.properties</exclude>
<exclude>IS_Prod_EU.properties</exclude>
<exclude>IS_Prod.properties</exclude>
<exclude>IS_redis.properties</exclude>
<exclude>TalentArchitect_Dev.properties</exclude>
<exclude>TalentArchitect_local.properties</exclude>
<exclude>TalentArchitect_Prod.properties</exclude>
</excludes>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.tomcat.maven</groupId>
<artifactId>tomcat7-maven-plugin</artifactId>
<version>2.1</version>
<configuration>
<url>http://10.10.205.21/manager/text</url>
<server>LEAPTCServer</server>
<path>/v1</path>
</configuration>
</plugin>
<plugin>
<artifactId>maven-eclipse-plugin</artifactId>
<version>2.9</version>
<configuration>
<additionalProjectnatures>
<projectnature>org.springframework.ide.eclipse.core.springnature</projectnature>
</additionalProjectnatures>
<additionalBuildcommands>
<buildcommand>org.springframework.ide.eclipse.core.springbuilder</buildcommand>
</additionalBuildcommands>
<downloadSources>true</downloadSources>
<downloadJavadocs>true</downloadJavadocs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.2</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
<compilerArgument>-Xlint:all</compilerArgument>
<showWarnings>true</showWarnings>
<showDeprecation>true</showDeprecation>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>3.2.2</version>
</plugin>
<plugin>
<groupId>com.smartbear.soapui</groupId>
<artifactId>soapui-maven-plugin</artifactId>
<version>4.6.1</version>
<executions>
<execution>
<phase>test1</phase>
<goals>
<goal>test1</goal>
</goals>
<configuration>
<projectFile>C:\sanjay\projects\TTP\SoapUI\JobPricingNew-soapui-project.xml</projectFile>
<outputFolder>.\target\soapui\reports\</outputFolder>
<testCase>AuthTokenTransfer</testCase>
<testCase>PricingGradingSuccess</testCase>
<testFailIgnore>true</testFailIgnore>
<projectProperties>
<value>message=Hello World!</value>
</projectProperties>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
<finalName>${project.artifactId}</finalName>
</build>
</project>

Maven surefire plugin throws an error even when it is not used in IntelliJ

I am using Intellij. Recently I have cleared the Maven repository in local and reimported the dependencies again. Since then I see an error in the Maven window as in the attached image, even though the surefire plugin is not used in pom.
Also, when I run the maven goal "install", I get the following error,
Failure to find org.apache.maven.plugins:maven-surefire-plugin:pom:2.12.4 in https://maven.springframework.org/release was cached in the local repository, resolution will not be reattempted until the update interval of spring-maven-release has elapsed or updates are forced
Sometimes I get the "protocol_version" error.
I have tried invalidating the cache and restarted the IDE, but still no luck. I am also attaching my pom.xml.
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.platform</groupId>
<artifactId>platform</artifactId>
<packaging>war</packaging>
<version>0.1.0.BUILD-SNAPSHOT</version>
<name>platform</name>
<properties>
<aspectj.version>1.7.0.RC1</aspectj.version>
<java.version>1.7</java.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<roo.version>1.2.2.RELEASE</roo.version>
<slf4j.version>1.6.4</slf4j.version>
<spring.version>3.1.1.RELEASE</spring.version>
<spring-security.version>3.1.0.RELEASE</spring-security.version>
<netbeans.hint.deploy.server>Tomcat</netbeans.hint.deploy.server>
</properties>
<repositories>
<repository>
<id>spring-maven-release</id>
<name>Spring Maven Release Repository</name>
<url>https://maven.springframework.org/release</url>
</repository>
<repository>
<id>spring-maven-milestone</id>
<name>Spring Maven Milestone Repository</name>
<url>https://maven.springframework.org/milestone</url>
</repository>
<repository>
<id>spring-roo-repository</id>
<name>Spring Roo Repository</name>
<url>https://spring-roo-repository.springsource.org/release</url>
</repository>
<repository>
<id>EclipseLink Repo</id>
<url>https://download.eclipse.org/rt/eclipselink/maven.repo</url>
<name>EclipseLink Repo</name>
</repository>
<repository>
<id>maven2-repository.dev.java.net</id>
<name>Java.net Repository for Maven</name>
<url>https://download.java.net/maven/2/</url>
<layout>default</layout>
</repository>
</repositories>
<pluginRepositories>
<pluginRepository>
<id>spring-maven-release</id>
<name>Spring Maven Release Repository</name>
<url>https://maven.springframework.org/release</url>
</pluginRepository>
<pluginRepository>
<id>spring-maven-milestone</id>
<name>Spring Maven Milestone Repository</name>
<url>https://maven.springframework.org/milestone</url>
</pluginRepository>
<pluginRepository>
<id>spring-roo-repository</id>
<name>Spring Roo Repository</name>
<url>https://spring-roo-repository.springsource.org/release</url>
</pluginRepository>
</pluginRepositories>
<dependencies>
<!-- General dependencies for standard applications -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.16</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjrt</artifactId>
<version>${aspectj.version}</version>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjweaver</artifactId>
<version>${aspectj.version}</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>3.0-alpha-1</version>
</dependency>
<dependency>
<groupId>jstl</groupId>
<artifactId>jstl</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>net.sf.flexjson</groupId>
<artifactId>flexjson</artifactId>
<version>2.1</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.1</version>
</dependency>
<!-- ROO dependencies -->
<dependency>
<groupId>org.springframework.roo</groupId>
<artifactId>org.springframework.roo.annotations</artifactId>
<version>${roo.version}</version>
<scope>provided</scope>
</dependency>
<!-- Spring dependencies -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${spring.version}</version>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${spring.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aop</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aspects</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>5.1.18</version>
</dependency>
<dependency>
<groupId>org.eclipse.persistence</groupId>
<artifactId>eclipselink</artifactId>
<version>2.2.1</version>
</dependency>
<dependency>
<groupId>org.eclipse.persistence</groupId>
<artifactId>javax.persistence</artifactId>
<version>2.0.3</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<version>4.2.0.Final</version>
<exclusions>
<exclusion>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
</exclusion>
<exclusion>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>javax.validation</groupId>
<artifactId>validation-api</artifactId>
<version>1.0.0.GA</version>
</dependency>
<dependency>
<groupId>cglib</groupId>
<artifactId>cglib-nodep</artifactId>
<version>2.2.2</version>
</dependency>
<dependency>
<groupId>javax.transaction</groupId>
<artifactId>jta</artifactId>
<version>1.1</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jdbc</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>commons-pool</groupId>
<artifactId>commons-pool</artifactId>
<version>1.5.6</version>
</dependency>
<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.3</version>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
<exclusion>
<groupId>xml-apis</groupId>
<artifactId>xml-apis</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework.data</groupId>
<artifactId>spring-data-jpa</artifactId>
<version>1.1.0.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-core</artifactId>
<version>${spring-security.version}</version>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-config</artifactId>
<version>${spring-security.version}</version>
<exclusions>
<exclusion>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-web</artifactId>
<version>${spring-security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-taglibs</artifactId>
<version>${spring-security.version}</version>
</dependency>
<dependency>
<groupId>net.jawr</groupId>
<artifactId>jawr</artifactId>
<version>3.3.3</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-mapper-asl</artifactId>
<version>1.7.1</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-xc</artifactId>
<version>1.7.1</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>2.2</version>
<configuration>
<webappDirectory>${project.build.directory}/${project.artifactId}.war</webappDirectory>
</configuration>
<!-- <configuration> <webXml>target/web.xml</webXml> </configuration> -->
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.4</version>
<configuration>
<source>${java.version}</source>
<target>${java.version}</target>
<encoding>${project.build.sourceEncoding}</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>aspectj-maven-plugin</artifactId>
<version>1.2</version>
<!-- NB: do not use 1.3 or 1.3.x due to MASPECTJ-90 and do not use 1.4 due to declare parents issue -->
<dependencies>
<!-- NB: You must use Maven 2.0.9 or above or these are ignored (see MNG-2972) -->
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjrt</artifactId>
<version>${aspectj.version}</version>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjtools</artifactId>
<version>${aspectj.version}</version>
</dependency>
</dependencies>
<executions>
<execution>
<goals>
<goal>compile</goal>
<goal>test-compile</goal>
</goals>
</execution>
</executions>
<configuration>
<outxml>true</outxml>
<aspectLibraries>
<aspectLibrary>
<groupId>org.springframework</groupId>
<artifactId>spring-aspects</artifactId>
</aspectLibrary>
</aspectLibraries>
<source>${java.version}</source>
<target>${java.version}</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>2.5</version>
<configuration>
<encoding>${project.build.sourceEncoding}</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.3</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>2.7</version>
</plugin>
<!-- IDE -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-eclipse-plugin</artifactId>
<version>2.7</version>
<!-- Note 2.8 does not work with AspectJ aspect path -->
<configuration>
<downloadSources>true</downloadSources>
<downloadJavadocs>false</downloadJavadocs>
<wtpversion>2.0</wtpversion>
<additionalBuildcommands>
<buildCommand>
<name>org.eclipse.ajdt.core.ajbuilder</name>
<arguments>
<aspectPath>org.springframework.aspects</aspectPath>
</arguments>
</buildCommand>
<buildCommand>
<name>org.springframework.ide.eclipse.core.springbuilder</name>
</buildCommand>
</additionalBuildcommands>
<additionalProjectnatures>
<projectnature>org.eclipse.ajdt.ui.ajnature</projectnature>
<projectnature>com.springsource.sts.roo.core.nature</projectnature>
<projectnature>org.springframework.ide.eclipse.core.springnature</projectnature>
</additionalProjectnatures>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-idea-plugin</artifactId>
<version>2.2</version>
<configuration>
<downloadSources>true</downloadSources>
<dependenciesAsLibraries>true</dependenciesAsLibraries>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>tomcat-maven-plugin</artifactId>
<version>1.1</version>
</plugin>
<plugin>
<groupId>org.mortbay.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
<version>8.1.4.v20120524</version>
<configuration>
<webAppConfig>
<contextPath>/${project.name}</contextPath>
</webAppConfig>
</configuration>
</plugin>
<plugin>
<groupId>org.jboss.as.plugins</groupId>
<artifactId>jboss-as-maven-plugin</artifactId>
<version>7.4.Final</version>
</plugin>
</plugins>
</build>
</project>
Any idea on why this could be?

IntelliJ: Why when I try to mark lower level source/test folders and then change pom.xml, folder markings are reset?

So I am using IntelliJ and I tried to mark my folders based on the structure suggested by Spring Initializr (https://start.spring.io/)
Here is what I want to achieve (two source roots, a resource and a test resource folder and a tests root folder):
When I make any change in the pom.xml it resets my marking to:
I am curious why this happens.. It doesn't happen when I have two top level folders src and test.. I am using IntelliJ 2016.3.4.
Here is my pom.xml if it makes any difference:
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>xxxx</groupId>
<artifactId>xxxx</artifactId>
<version>0.0.1-SNAPSHOT</version>
<packaging>jar</packaging>
<properties>
<scala.version>2.11.8</scala.version>
<spark.version>2.0.2</spark.version>
<hadoop.version>2.7.0</hadoop.version>
<spring.version>5.0.0.M5</spring.version>
<spring-boot.version>1.5.2.RELEASE</spring-boot.version>
<spring-security.version>4.2.2.RELEASE</spring-security.version>
<!-- Sonar -->
<sonar.java.coveragePlugin>jacoco</sonar.java.coveragePlugin>
<sonar.dynamicAnalysis>reuseReports</sonar.dynamicAnalysis>
<sonar.jacoco.itReportPath>${project.basedir}/../target/jacoco.exec</sonar.jacoco.itReportPath>
<sonar.language>java</sonar.language>
</properties>
<repositories>
<repository>
<snapshots>
<enabled>false</enabled>
</snapshots>
<id>bintray-greghaskins-maven</id>
<name>bintray</name>
<url>http://dl.bintray.com/greghaskins/maven</url>
</repository>
<repository>
<id>sonatype-oss-snapshots</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
<releases><enabled>false</enabled></releases>
<snapshots><enabled>true</enabled></snapshots>
</repository>
<repository>
<id>cvut-snapshots</id>
<name>Cvut</name>
<url>https://repository.fit.cvut.cz/maven/remote-repos/</url>
</repository>
<repository>
<id>mvn-repository-com-artifacts</id>
<name>mvnrepository.com</name>
<url>http://mvnrepository.com/artifact/</url>
</repository>
<repository>
<id>apache-snapshots</id>
<name>apache snapshots</name>
<url>http://repository.apache.org/snapshots/</url>
</repository>
<repository>
<id>mvn-alfresco</id>
<name>alfresco.com</name>
<url>https://artifacts.alfresco.com/nexus/content/repositories/public/</url>
</repository>
<repository>
<id>jitpack.io</id>
<url>https://jitpack.io</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>com.greghaskins</groupId>
<artifactId>spectrum</artifactId>
<version>1.0.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.github.jeremyh</groupId>
<artifactId>jBCrypt</artifactId>
<version>jbcrypt-0.4</version>
</dependency>
<!--<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-mllib_2.11</artifactId>
<version>${spark.version}</version>
</dependency>
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-sql_2.11</artifactId>
<version>${spark.version}</version>
</dependency>
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-core_2.11</artifactId>
<version>${spark.version}</version>
<exclusions>
<exclusion>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
</exclusion>
<exclusion>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
<version>${scala.version}</version>
</dependency>-->
<!--<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongo-java-driver</artifactId>
<version>3.4.0</version>
</dependency>-->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aop</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aspects</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-test</artifactId>
<version>${spring-boot.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-security</artifactId>
<version>${spring-boot.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-web</artifactId>
<version>${spring-boot.version}</version>
<exclusions>
<exclusion>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-tomcat</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-jetty</artifactId>
<version>${spring-boot.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-autoconfigure</artifactId>
<version>${spring-boot.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-web</artifactId>
<version>${spring-security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-config</artifactId>
<version>${spring-security.version}</version>
</dependency>
<dependency>
<groupId>io.springfox</groupId>
<artifactId>springfox-swagger2</artifactId>
<version>2.6.1</version>
</dependency>
<dependency>
<groupId>io.springfox</groupId>
<artifactId>springfox-swagger-ui</artifactId>
<version>2.6.1</version>
</dependency>
<dependency>
<groupId>ma.glasnost.orika</groupId>
<artifactId>orika-core</artifactId>
<version>1.5.0</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>2.0.2-beta</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.8.7</version>
</dependency>
<dependency>
<groupId>com.flextrade.jfixture</groupId>
<artifactId>jfixture-mockito</artifactId>
<version>2.7.0</version>
</dependency>
<dependency>
<groupId>com.github.mifmif</groupId>
<artifactId>generex</artifactId>
<version>1.0.2</version>
</dependency>
<dependency>
<groupId>io.jsonwebtoken</groupId>
<artifactId>jjwt</artifactId>
<version>0.7.0</version>
</dependency>
<dependency>
<groupId>joda-time</groupId>
<artifactId>joda-time</artifactId>
<version>2.9.7</version>
</dependency>
<dependency>
<groupId>com.datastax.cassandra</groupId>
<artifactId>cassandra-driver-core</artifactId>
<version>3.2.0</version>
</dependency>
<dependency>
<groupId>com.datastax.cassandra</groupId>
<artifactId>cassandra-driver-mapping</artifactId>
<version>3.2.0</version>
</dependency>
<dependency>
<groupId>com.datastax.cassandra</groupId>
<artifactId>java-dse-graph</artifactId>
<version>1.0.0-beta1</version>
<exclusions>
<exclusion>
<groupId>org.apache.tinkerpop</groupId>
<artifactId>tinkergraph-gremlin</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.tinkerpop</groupId>
<artifactId>tinkergraph-groovy</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.tinkerpop</groupId>
<artifactId>tinkergraph-gremlin</artifactId>
<version>3.3.0-SNAPSHOT</version>
</dependency>
<!--<dependency>-->
<!--<groupId>javax.measure</groupId>-->
<!--<artifactId>unit-api</artifactId>-->
<!--<version>1.0</version>-->
<!--</dependency>-->
<!--<dependency>
<groupId>tec.uom</groupId>
<artifactId>uom-se</artifactId>
<version>1.0.3-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>systems.uom</groupId>
<artifactId>systems-common</artifactId>
<version>0.6-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>systems.uom</groupId>
<artifactId>systems-quantity</artifactId>
<version>0.6-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>systems.uom</groupId>
<artifactId>systems-unicode</artifactId>
<version>0.6-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>systems.uom</groupId>
<artifactId>systems-parent</artifactId>
<version>0.6-SNAPSHOT</version>
</dependency>-->
</dependencies>
<build>
<resources>
<resource>
<directory>resources</directory>
</resource>
</resources>
<sourceDirectory>src</sourceDirectory>
<plugins>
<!-- <plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
<version>${spring-boot.version}</version>
<configuration>
<fork>true</fork>
<mainClass>com.xxxx.SpringBootApp</mainClass>
<layout>ZIP</layout>
</configuration>
<executions>
<execution>
<goals>
<goal>repackage</goal>
</goals>
</execution>
</executions>
</plugin>-->
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.7.8</version>
<configuration>
<destFile>${sonar.jacoco.reportPath}</destFile>
<append>true</append>
</configuration>
<executions>
<execution>
<id>agent</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
<finalName>xxxx</finalName>
</build>
</project>
Any help is appreciated! Thanks!
Your pom.xml overrides Maven defaults via this line: <sourceDirectory>src</sourceDirectory>, therefore src is configured as Source root when importing. Remove this line to restore the original behavior.

Generating JAR with MAVEN

I'm trying to creating a JAR with maven, look my pom.xml:
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>br.com.myjar</groupId>
<artifactId>myjar</artifactId>
<version>2.0</version>
<name>Java Web Build</name>
<description>Framework com recursos para projeto WEB</description>
<dependencies>
<dependency>
<groupId>org.facebook4j</groupId>
<artifactId>facebook4j-core</artifactId>
<version>2.3.1</version>
</dependency>
<dependency>
<groupId>javax.mail</groupId>
<artifactId>mail</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>org.apache.deltaspike.modules</groupId>
<artifactId>deltaspike-jpa-module-api</artifactId>
<version>1.7.1</version>
<scope>compile</scope>
</dependency>
<!-- JASPER REPORT IMPORTS -->
<dependency>
<groupId>net.sourceforge.barbecue</groupId>
<artifactId>barbecue</artifactId>
<version>1.5-beta1</version>
</dependency>
<dependency>
<groupId>net.sf.jasperreports</groupId>
<artifactId>jasperreports</artifactId>
<version>5.0.1</version>
</dependency>
<dependency>
<groupId>net.sf.jasperreports</groupId>
<artifactId>jasperreports-fonts</artifactId>
<version>4.0.0</version>
</dependency>
<dependency>
<groupId>xml-apis</groupId>
<artifactId>xml-apis</artifactId>
<version>1.4.01</version>
</dependency>
<dependency>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
<version>2.10.0</version>
</dependency>
<!-- FIM JASPER RESPORT IMPORTS -->
<dependency>
<groupId>com.sun.faces</groupId>
<artifactId>jsf-api</artifactId>
<version>2.1.6</version>
</dependency>
<dependency>
<groupId>com.sun.faces</groupId>
<artifactId>jsf-impl</artifactId>
<version>2.1.6</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.5</version>
</dependency>
<dependency>
<groupId>javax.persistence</groupId>
<artifactId>persistence-api</artifactId>
<version>1.0</version>
</dependency>
<!-- CDI -->
<dependency>
<groupId>org.jboss.weld.servlet</groupId>
<artifactId>weld-servlet</artifactId>
<version>2.3.0.Final</version>
</dependency>
<dependency>
<groupId>javax.inject</groupId>
<artifactId>javax.inject</artifactId>
<version>1</version>
</dependency>
<!-- EJB -->
<dependency>
<groupId>javax.ejb</groupId>
<artifactId>ejb-api</artifactId>
<version>3.0</version>
</dependency>
<!-- HIBERNATE -->
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>3.6.10.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-entitymanager</artifactId>
<version>3.6.10.Final</version>
</dependency>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<version>5.1.0.Final</version>
</dependency>
<dependency>
<groupId>cglib</groupId>
<artifactId>cglib-nodep</artifactId>
<version>2.2.2</version>
</dependency>
<dependency>
<groupId>javassist</groupId>
<artifactId>javassist</artifactId>
<version>3.12.1.GA</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.6.1</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<version>1.6.1</version>
</dependency>
<dependency>
<groupId>asm</groupId>
<artifactId>asm-commons</artifactId>
<version>3.1</version>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.17</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>20040616</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.4</version>
</dependency>
<dependency>
<groupId>commons-fileupload</groupId>
<artifactId>commons-fileupload</artifactId>
<version>1.3</version>
</dependency>
<dependency>
<groupId>org.primefaces</groupId>
<artifactId>primefaces</artifactId>
<version>3.5</version>
</dependency>
<dependency>
<groupId>javax.annotation</groupId>
<artifactId>jsr250-api</artifactId>
<version>1.0</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>java.net2.m2</id>
<name>Java.net m2 repo</name>
<url>http://download.java.net/maven/2</url>
</repository>
<repository>
<id>prime-repo</id>
<name>PrimeFaces Maven Repository</name>
<url>http://repository.primefaces.org</url>
<layout>default</layout>
</repository>
</repositories>
<build>
<finalName>myjar-${project.version}</finalName>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-pmd-plugin</artifactId>
<version>2.5</version>
<configuration>
<targetJdk>1.8</targetJdk>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
</configuration>
</plugin>
<!-- download source code in Eclipse, best practice -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-eclipse-plugin</artifactId>
<version>2.9</version>
<configuration>
<downloadSources>true</downloadSources>
<downloadJavadocs>false</downloadJavadocs>
</configuration>
</plugin>
</plugins>
<resources>
<resource>
<directory>src/main/resources</directory>
</resource>
</resources>
</build>
</project>
So, i have a WAR when i use this jar as a dependency. I checked in target/mywar/WEB-INF/lib/myjar-2.0.jar and all classes are there but when i try to start TOMCAT i get: ClassNotFoundException in classes of my jar.

Cannot locate file:tmp/cassandra.yaml?

While running the Usergrid server which makes use of cassandra in Windows, I'm coming across the following error and while it works fine in linux. Its a maven project and all dependencies are downloaded automatically. But this error is preventing the server from starting. Any solutions?
This is the Super POM of the project.
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<bundle.symbolicName>org.usergrid</bundle.symbolicName>
<bundle.namespace>org.usergrid</bundle.namespace>
<cassandra-javautils-version>0.7.1</cassandra-javautils-version>
<cassandra-version>1.0.6</cassandra-version>
<hector-om-version>2.0-01</hector-om-version>
<hector-version>1.0-3</hector-version>
<hector-test-version>1.0-3</hector-test-version>
<jackson-version>1.9.9</jackson-version>
<jersey-version>1.11</jersey-version>
<shiro-version>1.2.0</shiro-version>
<junit-version>4.8.2</junit-version>
<log4j-version>1.2.16</log4j-version>
<org.springframework.version>3.1.2.RELEASE</org.springframework.version>
<slf4j-version>1.6.1</slf4j-version>
<snakeyaml-version>1.8</snakeyaml-version>
<usergrid-custom-spring-properties>classpath:/usergrid-custom.properties</usergrid-custom-spring-properties>
<usergrid-custom-spring-test-properties>classpath:/usergrid-custom-test.properties</usergrid-custom-spring-test-properties>
<metrics-version>2.1.2</metrics-version>
</properties>
<groupId>org.usergrid</groupId>
<artifactId>usergrid</artifactId>
<version>0.0.1-SNAPSHOT</version>
<name>${bundle.symbolicName} [${bundle.namespace}]</name>
<description>Usergrid Project</description>
<packaging>pom</packaging>
<modules>
<module>config</module>
<module>core</module>
<module>services</module>
<module>tools</module>
<module>mongo-emulator</module>
<module>websocket</module>
<module>rest</module>
<module>standalone</module>
<module>launcher</module>
<module>count-common</module>
<module>count-batcher</module>
<module>count-inserter</module>
</modules>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>commons-beanutils</groupId>
<artifactId>commons-beanutils</artifactId>
<version>1.8.3</version>
<type>jar</type>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2.1</version>
<type>jar</type>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.5</version>
<type>jar</type>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.4</version>
</dependency>
<dependency>
<groupId>com.datastax.hector</groupId>
<artifactId>hector-composite</artifactId>
<version>0.8.0-rc1-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>com.fasterxml.uuid</groupId>
<artifactId>java-uuid-generator</artifactId>
<version>3.1.2</version>
</dependency>
<dependency>
<groupId>com.hazelcast</groupId>
<artifactId>hazelcast-all</artifactId>
<version>1.9.3.1</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-json</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-client</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-server</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>com.sun.jersey</groupId>
<artifactId>jersey-grizzly2</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.grizzly</groupId>
<artifactId>grizzly-http-servlet-server</artifactId>
<version>2.1.2</version>
</dependency>
<dependency>
<groupId>com.sun.jersey.contribs</groupId>
<artifactId>jersey-spring</artifactId>
<version>${jersey-version}</version>
<exclusions>
<exclusion>
<groupId>org.springframework</groupId>
<artifactId>spring-aop</artifactId>
</exclusion>
<exclusion>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
</exclusion>
<exclusion>
<groupId>org.springframework</groupId>
<artifactId>spring</artifactId>
</exclusion>
<exclusion>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
</exclusion>
<exclusion>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
</exclusion>
<exclusion>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.sun.jersey.contribs</groupId>
<artifactId>jersey-multipart</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>com.sun.jersey.contribs.jersey-oauth</groupId>
<artifactId>oauth-signature</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>com.sun.jersey.contribs.jersey-oauth</groupId>
<artifactId>oauth-server</artifactId>
<version>${jersey-version}</version>
</dependency>
<dependency>
<groupId>com.sun.mail</groupId>
<artifactId>javax.mail</artifactId>
<version>1.4.4</version>
</dependency>
<dependency>
<groupId>org.jvnet.mock-javamail</groupId>
<artifactId>mock-javamail</artifactId>
<version>1.9</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.servicemix.bundles</groupId>
<artifactId>org.apache.servicemix.bundles.saxon</artifactId>
<version>9.1.0.8_2</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>r09</version>
</dependency>
<dependency>
<groupId>de.undercouch</groupId>
<artifactId>bson4jackson</artifactId>
<version>1.1.2</version>
</dependency>
<dependency>
<groupId>com.beoui</groupId>
<artifactId>geocell</artifactId>
<version>0.0.8</version>
</dependency>
<dependency>
<groupId>javaee</groupId>
<artifactId>javaee-api</artifactId>
<version>5</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>javax.persistence</groupId>
<artifactId>persistence-api</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
<version>2.5</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>jstl</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit-version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>${log4j-version}</version>
</dependency>
<dependency>
<groupId>me.prettyprint</groupId>
<artifactId>hector-core</artifactId>
<version>${hector-version}</version>
</dependency>
<dependency>
<groupId>me.prettyprint</groupId>
<artifactId>hector-test</artifactId>
<version>${hector-test-version}</version>
</dependency>
<dependency>
<groupId>me.prettyprint</groupId>
<artifactId>hector-object-mapper</artifactId>
<version>${hector-om-version}</version>
</dependency>
<dependency>
<groupId>net.tanesha.recaptcha4j</groupId>
<artifactId>recaptcha4j</artifactId>
<version>0.0.8</version>
</dependency>
<dependency>
<groupId>org.antlr</groupId>
<artifactId>antlr-runtime</artifactId>
<version>3.4</version>
</dependency>
<dependency>
<groupId>org.apache.activemq</groupId>
<artifactId>activemq-core</artifactId>
<version>5.5.0</version>
<optional>false</optional>
</dependency>
<dependency>
<groupId>org.apache.activemq</groupId>
<artifactId>activemq-spring</artifactId>
<version>5.5.0</version>
<optional>false</optional>
</dependency>
<dependency>
<groupId>org.apache.activemq</groupId>
<artifactId>activemq-pool</artifactId>
<version>5.5.0</version>
<optional>false</optional>
</dependency>
<dependency>
<groupId>org.apache.amber</groupId>
<artifactId>oauth2-common</artifactId>
<version>0.2-ug-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.apache.amber</groupId>
<artifactId>oauth2-authzserver</artifactId>
<version>0.2-ug-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.apache.amber</groupId>
<artifactId>oauth2-resourceserver</artifactId>
<version>0.2-ug-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.apache.cassandra</groupId>
<artifactId>cassandra-all</artifactId>
<version>${cassandra-version}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.apache.cassandra</groupId>
<artifactId>cassandra-javautils</artifactId>
<version>${cassandra-javautils-version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-core</artifactId>
<version>3.0.3</version>
</dependency>
<dependency>
<groupId>org.apache.shiro</groupId>
<artifactId>shiro-core</artifactId>
<version>${shiro-version}</version>
</dependency>
<dependency>
<groupId>org.apache.shiro</groupId>
<artifactId>shiro-web</artifactId>
<version>${shiro-version}</version>
</dependency>
<dependency>
<groupId>org.apache.shiro</groupId>
<artifactId>shiro-spring</artifactId>
<version>${shiro-version}</version>
</dependency>
<dependency>
<groupId>org.apache.tomcat</groupId>
<artifactId>catalina</artifactId>
<version>6.0.29</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.xbean</groupId>
<artifactId>xbean-spring</artifactId>
<version>3.7</version>
</dependency>
<dependency>
<groupId>org.apache.zookeeper</groupId>
<artifactId>zookeeper</artifactId>
<version>3.3.2</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-core-asl</artifactId>
<version>${jackson-version}</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-jaxrs</artifactId>
<version>${jackson-version}</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-mapper-asl</artifactId>
<version>${jackson-version}</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-xc</artifactId>
<version>${jackson-version}</version>
</dependency>
<dependency>
<groupId>org.codehaus.jackson</groupId>
<artifactId>jackson-smile</artifactId>
<version>${jackson-version}</version>
</dependency>
<dependency>
<groupId>org.jboss.netty</groupId>
<artifactId>netty</artifactId>
<version>3.2.7.Final</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.jsoup</groupId>
<artifactId>jsoup</artifactId>
<version>1.6.0</version>
</dependency>
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongo-java-driver</artifactId>
<version>2.9.0</version>
</dependency>
<dependency>
<groupId>org.perf4j</groupId>
<artifactId>perf4j</artifactId>
<version>0.9.12</version>
</dependency>
<dependency>
<groupId>org.python</groupId>
<artifactId>jython</artifactId>
<version>2.5.0</version>
</dependency>
<dependency>
<groupId>org.scale7</groupId>
<artifactId>scale7-core</artifactId>
<version>1.4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.scale7</groupId>
<artifactId>scale7-cages</artifactId>
<version>0.8-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j-version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
<version>${slf4j-version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>${slf4j-version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jul-to-slf4j</artifactId>
<version>${slf4j-version}</version>
</dependency>
<dependency>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
<version>1.1.1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-expression</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aop</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jms</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${org.springframework.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.yaml</groupId>
<artifactId>snakeyaml</artifactId>
<version>${snakeyaml-version}</version>
</dependency>
<dependency>
<groupId>com.yammer.metrics</groupId>
<artifactId>metrics-core</artifactId>
<version>${metrics-version}</version>
</dependency>
<dependency>
<groupId>com.yammer.metrics</groupId>
<artifactId>metrics-spring</artifactId>
<version>${metrics-version}</version>
</dependency>
<dependency>
<groupId>com.yammer.metrics</groupId>
<artifactId>metrics-annotation</artifactId>
<version>${metrics-version}</version>
</dependency>
</dependencies>
</dependencyManagement>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
</plugins>
</build>
<profiles>
<!-- Jenkins by default defines a property BUILD_NUMBER which is used to
enable the profile. -->
<profile>
<id>jenkins</id>
<activation>
<property>
<name>env.BUILD_NUMBER</name>
</property>
</activation>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>cobertura-maven-plugin</artifactId>
<version>2.5.1</version>
<configuration>
<formats>
<format>xml</format>
<format>html</format>
</formats>
</configuration>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>cobertura</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</pluginManagement>
</build>
</profile>
</profiles>
<reporting>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>cobertura-maven-plugin</artifactId>
<version>2.5</version>
</plugin>
</plugins>
</reporting>
<repositories>
<repository>
<id>usergrid-dependencies-snapshots</id>
<name>Usergrid s3 dependencies snapshots repository</name>
<url>https://usergrid-maven.s3.amazonaws.com/dependencies-snapshots</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
<repository>
<id>usergrid-dependencies</id>
<name>Usergrid s3 dependencies repository</name>
<url>https://usergrid-maven.s3.amazonaws.com/dependencies</url>
</repository>
<repository>
<id>maven2-repository.dev.java.net</id>
<name>Java.net Maven 2 Repository</name>
<url>http://download.java.net/maven/2</url>
<layout>default</layout>
</repository>
<repository>
<id>repository-hector-dev.forge.cloudbees.com</id>
<name>Hector Dev Snapshots</name>
<url>https://repository-hector-dev.forge.cloudbees.com/snapshot/</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
<repository>
<id>codehaus</id>
<name>codehaus</name>
<url>http://repository.codehaus.org/</url>
</repository>
<repository>
<id>nexus-snapshots</id>
<name>Sonatype Nexus Snapshots</name>
<url>http://oss.sonatype.org/content/repositories/snapshots</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
<repository>
<id>javageomodel-repo</id>
<name>GeocellJava Repository</name>
<url>http://javageomodel.googlecode.com/svn/repository</url>
</repository>
</repositories>
<pluginRepositories>
<pluginRepository>
<id>maven2-repository.dev.java.net</id>
<name>Java.net Repository for Maven</name>
<url>http://download.java.net/maven/2</url>
<layout>default</layout>
</pluginRepository>
</pluginRepositories>
</project>
Ok so (correct me if I'm wrong) I see that you don't bundle the app on the (dev or Continuous Integration) machine, then deploy it to your servers.
Instead, the server downloads all the files it needs.
So I would advise 3 things :
1) Find where, on the linux server, is located the cassandra.yaml file. tmp/cassandra.yaml might be a relative path, but relative to what ? When you locate it, you can trace how you got it, (from a jar ?), and we can advise.
2) I assume you had to install maven on both servers (windows and linux) as maven downloads the dependencies on each server.
Maybe something is different, or went wrong.
For instance, you could have a different maven setup (repositories), even if your pom seems to be self sufficient about repositories.
Or something could have been wrong the first time you downloaded a dependency. You can go in the windows server .m2 folder, and see if something is wrong with the cassandra dependencies (sometimes, you have to delete a broken "dependency", if it could not be downloaded the first time you tried).
3) I see some dependencies are accessed via https. You can try to see if this is not a problem, from your windows server.

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