Makefile.win:1: ***missing separator. Stop - makefile

I know this error relates to missing TAB, but I somehow cannot find out where on line 1 is the tab missing:
Makefile:
## -*- mode: make; tab-width: 8; -*-
##
## Simple Makefile
##
## TODO:
## proper configure for non-Debian file locations, [ Done ]
## allow RHOME to be set for non-default R etc
## comment this out if you need a different version of R,
## and set set R_HOME accordingly as an environment variable
R_HOME = $(shell R RHOME)
sources = $(wildcard *.cpp)
programs = $(sources:.cpp=)
## include headers and libraries for R
RCPPFLAGS = $(shell $(R_HOME)/bin/R CMD config --cppflags)
RLDFLAGS = $(shell $(R_HOME)/bin/R CMD config --ldflags)
RBLAS = $(shell $(R_HOME)/bin/R CMD config BLAS_LIBS)
RLAPACK = $(shell $(R_HOME)/bin/R CMD config LAPACK_LIBS)
## if you need to set an rpath to R itself, also uncomment
#RRPATH := -Wl,-rpath,$(R_HOME)/lib
## include headers and libraries for Rcpp interface classes
RCPPINCL = $(shell echo 'Rcpp:::CxxFlags()' | $(R_HOME)/bin/R --vanilla --slave)
RCPPLIBS = $(shell echo 'Rcpp:::LdFlags()' | $(R_HOME)/bin/R --vanilla --slave)
## include headers and libraries for RInside embedding classes
RINSIDEINCL = $(shell echo 'RInside:::CxxFlags()' | $(R_HOME)/bin/R --vanilla --slave)
RINSIDELIBS = $(shell echo 'RInside:::LdFlags()' | $(R_HOME)/bin/R --vanilla --slave)
## compiler etc settings used in default make rules
CXX = $(shell $(R_HOME)/bin/R CMD config CXX)
CPPFLAGS = -Wall $(shell $(R_HOME)/bin/R CMD config CPPFLAGS)
CXXFLAGS = $(RCPPFLAGS) $(RCPPINCL) $(RINSIDEINCL) $(shell $(R_HOME)/bin/R CMD
config CXXFLAGS)
LDLIBS = $(RLDFLAGS) $(RRPATH) $(RBLAS) $(RLAPACK) $(RCPPLIBS) $(RINSIDELIBS)
all: $(programs)
#test -x /usr/bin/strip && strip $^
run: $(programs)
#for p in $(programs); do echo; echo "Running $$p:"; ./$$p; done
clean:
rm -vf $(programs)
rm -vrf *.dSYM
runAll:
for p in $(programs); do echo "Running $$p"; ./$$p; done

Personally I have faced the same problem with a Makefile saved by some editor on Windows. The cause then was a BOM (Byte Order Mark) in the Makefile which was confusing Make.
To check if it is so you could (manually) copy and paste the whole Makefile (or maybe except for the header comment) into a new file created in some other editor/IDE. Also here is a great answer on how to remove BOM on Windows.

If your "Makefile.win" is an exact copy, then replace all spaces before the commands with tabs:
all: $(programs)
<insert tab here, no spaces>#test -x /usr/bin/strip && strip $^
run: $(programs)
<insert tab here, no spaces>#for p in $(programs); do echo; echo "Running $$p:"; ./$$p; done
clean:
<insert tab here, no spaces>rm -vf $(programs)
<insert tab here, no spaces>rm -vrf *.dSYM
runAll:
<insert tab here, no spaces>for p in $(programs); do echo "Running $$p"; ./$$p; done

The line just before LDLIBS apparently reads:
config CXXFLAGS)
That would generate a makefile syntax error, but I would expect it to be with a line number larger than 1.

Related

makefile removing uname command

I want to just run make in windows cmd. Goal is just that i can run make in default windows CMD without that i need run make inside MSYSY or CYGWIN.
When i run make command inside windows cmd it shows message:
'uname' is not recognized as an internal or external command,
operable program or batch file.
process_begin: CreateProcess(NULL, uname -m, ...) failed.
####################################################################
# Makefile
#
# OS variable must either be 'posix' or 'win'. E.g. 'make OS=posix'.
# Error is thrown if OS variable is not equal with any of these.
#
####################################################################
.SUFFIXES: # ignore builtin rules
.PHONY: all debug release clean export
####################################################################
# Definitions #
####################################################################
# uniq is a function which removes duplicate elements from a list
uniq = $(strip $(if $1,$(firstword $1) \
$(call uniq,$(filter-out $(firstword $1),$1))))
PROJECTNAME = projectoutput
CONFIG ?= default
SDK_DIR = ../../../..
OBJ_DIR = obj
EXE_DIR = exe
LST_DIR = lst
EXPORT_DIR = export
RTL_DIR = $(SDK_DIR)/util
####################################################################
# Definitions of toolchain. #
# You might need to do changes to match your system setup #
####################################################################
RMDIRS := rm -rf
RMFILES := rm -rf
ALLFILES := /*.*
NULLDEVICE := /dev/null
SHELLNAMES := $(ComSpec)$(COMSPEC)
UNAME := $(shell uname | tr '[:upper:]' '[:lower:]')
DEVICE := x64
ifneq ($(filter arm%, $(shell uname -m)),)
DEVICE := cortexa
endif
ifeq (export,$(findstring export, $(MAKECMDGOALS)))
# Set the default OS for exporting if not specified externally
ifeq (,$(filter $(OS),posix win))
OS:=posix
endif
else
# Try autodetecting the environment: Windows
ifneq ($(SHELLNAMES),)
QUOTE :="
ifeq (,$(filter $(OS),posix win))
OS:=win
endif
ifneq ($(COMSPEC),)
ifeq ($(findstring cygdrive,$(shell set)),)
# We were not on a cygwin platform
NULLDEVICE := NUL
endif
else
# Assume we are making on a Windows platform
# This is a convenient place to override TOOLDIR, DO NOT add trailing
# whitespace chars, they do matter !
SHELL := $(SHELLNAMES)
RMDIRS := rd /s /q
RMFILES := del /s /q
ALLFILES := \*.*
NULLDEVICE := NUL
endif
# Other than Windows
else
ifeq (,$(filter $(OS),posix win))
OS:=posix
endif
endif
endif
# Create directories and do a clean which is compatible with parallell make
$(shell mkdir $(OBJ_DIR)>$(NULLDEVICE) 2>&1)
$(shell mkdir $(EXE_DIR)>$(NULLDEVICE) 2>&1)
$(shell mkdir $(LST_DIR)>$(NULLDEVICE) 2>&1)
ifeq (clean,$(findstring clean, $(MAKECMDGOALS)))
ifneq ($(filter $(MAKECMDGOALS),all debug release),)
$(shell $(RMFILES) $(OBJ_DIR)$(ALLFILES)>$(NULLDEVICE) 2>&1)
$(shell $(RMFILES) $(EXE_DIR)$(ALLFILES)>$(NULLDEVICE) 2>&1)
$(shell $(RMFILES) $(LST_DIR)$(ALLFILES)>$(NULLDEVICE) 2>&1)
endif
endif
ifeq ($(OS),posix)
CC = gcc
LD = ld
AR = ar
else
CC = x86_64-w64-mingw32-gcc
LD = x86_64-w64-mingw32-ld
AR = x86_64-w64-mingw32-ar
endif
####################################################################
# Flags #
####################################################################
INCLUDEPATHS += . \
$(SDK_DIR)/app/common_host/uart \
$(SDK_DIR)/app/common_host/tcp \
$(SDK_DIR)/app/common_host/system \
$(SDK_DIR)/app/common_host/app_assert \
$(SDK_DIR)/app/common_host/app_signal \
$(SDK_DIR)/app/common_host/log \
$(SDK_DIR)/app/common_host/log/config \
INCFLAGS = $(addprefix -I, $(INCLUDEPATHS))
# -MMD : Don't generate dependencies on system header files.
# -MP : Add phony targets, useful when a h-file is removed from a project.
# -MF : Specify a file to write the dependencies to.
DEPFLAGS = \
-MMD \
-MP \
-MF $(#:.o=.d)
# Add -Wa,-ahld=$(LST_DIR)/$(#F:.o=.lst) to CFLAGS to produce assembly list files
override CFLAGS += \
-fno-short-enums \
-Wall \
-c \
-fmessage-length=0 \
-std=c99 \
$(DEPFLAGS)
# Linux platform: if _DEFAULT_SOURCE is defined, the default is to have _POSIX_SOURCE set to one
# and _POSIX_C_SOURCE set to 200809L, as well as enabling miscellaneous functions from BSD and SVID.
# See usr/include/fetures.h for more information.
#
# _BSD_SOURCE (deprecated since glibc 2.20)
# Defining this macro with any value causes header files to expose BSD-derived definitions.
# In glibc versions up to and including 2.18, defining this macro also causes BSD definitions to be
# preferred in some situations where standards conflict, unless one or more of _SVID_SOURCE,
# _POSIX_SOURCE, _POSIX_C_SOURCE, _XOPEN_SOURCE, _XOPEN_SOURCE_EXTENDED, or _GNU_SOURCE is defined,
# in which case BSD definitions are disfavored. Since glibc 2.19, _BSD_SOURCE no longer causes BSD
# definitions to be preferred in case of conflicts. Since glibc 2.20, this macro is deprecated.
# It now has the same effect as defining _DEFAULT_SOURCE, but generates a compile-time warning
# (unless _DEFAULT_SOURCE is also defined). Use _DEFAULT_SOURCE instead.
# To allow code that requires _BSD_SOURCE in glibc 2.19 and earlier and _DEFAULT_SOURCE in glibc
# 2.20 and later to compile without warnings, define both _BSD_SOURCE and _DEFAULT_SOURCE.
#
# OSX platform: _DEFAULT_SOURCE is not used, instead _DARWIN_C_SOURCE is defined by default.
ifeq ($(OS),posix)
override CFLAGS += \
-D_DEFAULT_SOURCE \
-D_BSD_SOURCE
endif
# NOTE: The -Wl,--gc-sections flag may interfere with debugging using gdb.
ifeq ($(OS),posix)
override LDFLAGS += \
-L$(RTL_DIR)/lib/$(UNAME)_$(DEVICE)/gcc/release \
-lstdc++ \
-lpthread \
-lm
else
override LDFLAGS += \
-static \
-lstdc++ \
-lpthread \
-lWs2_32
endif
####################################################################
# Files #
####################################################################
C_SRC += \
$(SDK_DIR)/app/common_host/system/system.c \
$(SDK_DIR)/app/common_host/app_signal/app_signal_$(OS).c \
app.c \
loc.c \
conn.c \
main.c
# this file should be the last added
C_SRC += \
$(SDK_DIR)/app/common/uart/uart_$(OS).c
# Project resources
INC_FILES = $(foreach dir,$(INCLUDEPATHS),$(wildcard $(dir)/*.h))
PROJ_FILES = $(C_SRC) $(INC_FILES) $(RTL_DIR)/lib makefile
DST_DIR = $(EXPORT_DIR)/app/$(PROJECTNAME)/
DST_FILES := $(addprefix $(DST_DIR), $(PROJ_FILES))
####################################################################
# Rules #
####################################################################
C_FILES = $(notdir $(C_SRC) )
#make list of source paths, uniq removes duplicate paths
C_PATHS = $(call uniq, $(dir $(C_SRC) ) )
C_OBJS = $(addprefix $(OBJ_DIR)/, $(C_FILES:.c=.o))
C_DEPS = $(addprefix $(OBJ_DIR)/, $(C_FILES:.c=.d))
OBJS = $(C_OBJS)
vpath %.c $(C_PATHS)
# Default build is debug build
all: debug
debug: CFLAGS += -O0 -g3
debug: $(EXE_DIR)/$(PROJECTNAME)
release: $(EXE_DIR)/$(PROJECTNAME)
# Create objects from C SRC files
$(OBJ_DIR)/%.o: %.c
#echo "Building file: $<"
$(CC) $(CFLAGS) $(INCFLAGS) -c -o $# $<
# Link
$(EXE_DIR)/$(PROJECTNAME): $(OBJS)
#echo "Linking target: $#"
$(CC) $^ $(LDFLAGS) -o $#
clean:
ifeq ($(filter $(MAKECMDGOALS),all debug release),)
$(RMDIRS) $(OBJ_DIR) $(LST_DIR) $(EXE_DIR) $(EXPORT_DIR)
endif
# Collect project files for exporting
$(DST_FILES) : $(addprefix $(DST_DIR), %) : %
#mkdir -p $(dir $#) && cp -pRv $< $#
export: $(DST_FILES)
#echo "Exporting done."
# include auto-generated dependency files (explicit rules)
ifneq (clean,$(findstring clean, $(MAKECMDGOALS)))
-include $(C_DEPS)
endif
Look here:
UNAME := $(shell uname | tr '[:upper:]' '[:lower:]')
You run $(shell uname ...). That starts a shell and runs the command given. If you run make so that it uses cmd.exe as its shell without msys or Cygwin, then it's as if you typed uname | tr '[:upper:]' '[:lower:]' at your cmd.exe prompt, which obviously will fail as you've seen.
If you want to avoid msys or Cygwin then you have to fix ALL of your makefile to not use any POSIX commands, including here.

make: Nothing to be done for 'all'. in Omnet

After Installng Omnetpp 5.5.1 in Ubuntu 18.04 ,For any folder in Omnetpp, make command is not making any sense.
As it showing the following message:
make: Nothing to be done for 'all'.
Even suggested methods on Internet are not working in my case.Please help.
My makefile is following for Aloha Folder.
#
# OMNeT++/OMNEST Makefile for aloha
#
# This file was generated with the command:
# opp_makemake -f --deep
#
# Name of target to be created (-o option)
TARGET = aloha$(D)$(EXE_SUFFIX)
TARGET_DIR = .
# User interface (uncomment one) (-u option)
USERIF_LIBS = $(ALL_ENV_LIBS) # that is, $(TKENV_LIBS) $(QTENV_LIBS) $(CMDENV_LIBS)
#USERIF_LIBS = $(CMDENV_LIBS)
#USERIF_LIBS = $(TKENV_LIBS)
#USERIF_LIBS = $(QTENV_LIBS)
# C++ include paths (with -I)
INCLUDE_PATH =
# Additional object and library files to link with
EXTRA_OBJS =
# Additional libraries (-L, -l options)
LIBS =
# Output directory
PROJECT_OUTPUT_DIR = out
PROJECTRELATIVE_PATH =
O = $(PROJECT_OUTPUT_DIR)/$(CONFIGNAME)/$(PROJECTRELATIVE_PATH)
# Object files for local .cc, .msg and .sm files
OBJS = $O/Host.o $O/Server.o
# Message files
MSGFILES =
# SM files
SMFILES =
#------------------------------------------------------------------------------
# Pull in OMNeT++ configuration (Makefile.inc)
ifneq ("$(OMNETPP_CONFIGFILE)","")
CONFIGFILE = $(OMNETPP_CONFIGFILE)
else
ifneq ("$(OMNETPP_ROOT)","")
CONFIGFILE = $(OMNETPP_ROOT)/Makefile.inc
else
CONFIGFILE = $(shell opp_configfilepath)
endif
endif
ifeq ("$(wildcard $(CONFIGFILE))","")
$(error Config file '$(CONFIGFILE)' does not exist -- add the OMNeT++ bin directory to the path so that opp_configfilepath can be found, or set the OMNETPP_CONFIGFILE variable to point to Makefile.inc)
endif
include $(CONFIGFILE)
# Simulation kernel and user interface libraries
OMNETPP_LIBS = $(OPPMAIN_LIB) $(USERIF_LIBS) $(KERNEL_LIBS) $(SYS_LIBS)
COPTS = $(CFLAGS) $(IMPORT_DEFINES) $(INCLUDE_PATH) -I$(OMNETPP_INCL_DIR)
MSGCOPTS = $(INCLUDE_PATH)
SMCOPTS =
# we want to recompile everything if COPTS changes,
# so we store COPTS into $COPTS_FILE and have object
# files depend on it (except when "make depend" was called)
COPTS_FILE = $O/.last-copts
ifneq ("$(COPTS)","$(shell cat $(COPTS_FILE) 2>/dev/null || echo '')")
$(shell $(MKPATH) "$O" && echo "$(COPTS)" >$(COPTS_FILE))
endif
#------------------------------------------------------------------------------
# User-supplied makefile fragment(s)
# >>>
# <<<
#------------------------------------------------------------------------------
# Main target
all: $(TARGET_DIR)/$(TARGET)
$(TARGET_DIR)/% :: $O/%
#mkdir -p $(TARGET_DIR)
$(Q)$(LN) $< $#
ifeq ($(TOOLCHAIN_NAME),clangc2)
$(Q)-$(LN) $(<:%.dll=%.lib) $(#:%.dll=%.lib)
endif
$O/$(TARGET): $(OBJS) $(wildcard $(EXTRA_OBJS)) Makefile $(CONFIGFILE)
#$(MKPATH) $O
#echo Creating executable: $#
$(Q)$(CXX) $(LDFLAGS) -o $O/$(TARGET) $(OBJS) $(EXTRA_OBJS) $(AS_NEEDED_OFF) $(WHOLE_ARCHIVE_ON) $(LIBS) $(WHOLE_ARCHIVE_OFF) $(OMNETPP_LIBS)
.PHONY: all clean cleanall depend msgheaders smheaders
.SUFFIXES: .cc
$O/%.o: %.cc $(COPTS_FILE) | msgheaders smheaders
#$(MKPATH) $(dir $#)
$(qecho) "$<"
$(Q)$(CXX) -c $(CXXFLAGS) $(COPTS) -o $# $<
%_m.cc %_m.h: %.msg
$(qecho) MSGC: $<
$(Q)$(MSGC) -s _m.cc -MD -MP -MF $O/$(basename $<)_m.h.d $(MSGCOPTS) $?
%_sm.cc %_sm.h: %.sm
$(qecho) SMC: $<
$(Q)$(SMC) -c++ -suffix cc $(SMCOPTS) $?
msgheaders: $(MSGFILES:.msg=_m.h)
smheaders: $(SMFILES:.sm=_sm.h)
clean:
$(qecho) Cleaning $(TARGET)
$(Q)-rm -rf $O
$(Q)-rm -f $(TARGET_DIR)/$(TARGET)
$(Q)-rm -f $(TARGET_DIR)/$(TARGET:%.dll=%.lib)
$(Q)-rm -f $(call opp_rwildcard, . , *_m.cc *_m.h *_sm.cc *_sm.h)
cleanall:
$(Q)$(MAKE) -s clean MODE=release
$(Q)$(MAKE) -s clean MODE=debug
$(Q)-rm -rf $(PROJECT_OUTPUT_DIR)
# include all dependencies
-include $(OBJS:%=%.d) $(MSGFILES:%.msg=$O/%_m.h.d)
This aforementioned file is missing some information like c++ INCLUDE_PATH and EXTRA_OBJS and LIBS.Is this the reason for not being run?Please Help.
The makefile says that 'Nothing to be done' because the executable is present and up to date, so it is indeed nothing to be done. This is not an error.
As you have indicated, you can execute ./aloha and then that throws a runtime error. This is NOT related to the build process.

Configure RInside with Veins and OMNET++ on Windows

I have been trying to configure RInside with Veins and OMNET++, but finding some issues.
After going through the discussion in Is it possible to use RInside in omnet++/Veins project to benefit from rich R features and How to set up Eclipse + StatET + Rcpp on Windows, I created a new project (shared type) in omnet++ and tried to configure RInside it. I am experiencing some errors ("undefined reference to RInside::operator[]", "undefined reference to RInside::parseEvalQ").
I know that this is a linking error. I am fairly new to C++ configurations and eclipse based IDEs so struggling to figure out what's wrong. I am attaching the screenshots of the configurations as well. I would really appreciate if someone can help.
Update (after successfully building RInside and making sure that the tool chain is right)
Here is the makefrag file
#
# on windows we have to link with the ws2_32 (winsock2) library as it is no longer added to the omnetpp system libraries by default (as of OMNeT++ 5.1)
# copied from INET Framework (inet-3.6.0) makefrag
#
ifeq ($(PLATFORM),win32.x86_64)
LIBS += -lws2_32
DEFINES += -DINET_EXPORT
ENABLE_AUTO_IMPORT=-Wl,--enable-auto-import
LDFLAGS := $(filter-out $(ENABLE_AUTO_IMPORT), $(LDFLAGS))
R_HOME := $(shell R RHOME | sed -e "s|\\\\|\/|g")
R_ARCH := --arch $(shell echo 'cat(.Platform$$r_arch)' | R --vanilla --slave)
sources := $(wildcard *.cpp)
programs := $(sources:.cpp=)
## include headers and libraries for R
RCPPFLAGS := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config --cppflags)
RLDFLAGS := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config --ldflags)
RBLAS := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config BLAS_LIBS)
RLAPACK := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config LAPACK_LIBS)
## include headers and libraries for Rcpp interface classes
RCPPINCL := $(shell echo 'Rcpp:::CxxFlags()' | $(R_HOME)/bin/R $(R_ARCH) --vanilla --slave)
RCPPLIBS := $(shell echo 'Rcpp:::LdFlags()' | $(R_HOME)/bin/R $(R_ARCH) --vanilla --slave)
## include headers and libraries for RInside embedding classes
RINSIDEINCL := $(shell echo 'RInside:::CxxFlags()' | $(R_HOME)/bin/R $(R_ARCH) --vanilla --slave)
RINSIDELIBS := $(shell echo 'RInside:::LdFlags()' | $(R_HOME)/bin/R $(R_ARCH) --vanilla --slave)
#DEFINES += $(RCPPFLAGS) $(RCPPINCL) $(RINSIDEINCL) $(shell $(R_HOME)/bin/R CMD config CPPFLAGS) $(shell $(R_HOME)/bin/R CMD config CXXFLAGS)
#LIBS += $(RLDFLAGS) $(RRPATH) $(RBLAS) $(RLAPACK) $(RCPPLIBS) $(RINSIDELIBS)
endif
I gave integrating RInside and Veins (version 5 alpha 1) a quick try and can report success.
I installed RInside by running R and executing install.packages('RInside').
I then amended the following lines (mostly copied from the RInside examples GNUMakefile) to the Veins src/makefrag file:
# determine flags for RInside
R_HOME := $(shell R RHOME)
RCPPFLAGS := $(shell $(R_HOME)/bin/R CMD config --cppflags)
RLDFLAGS := $(shell $(R_HOME)/bin/R CMD config --ldflags)
RBLAS := $(shell $(R_HOME)/bin/R CMD config BLAS_LIBS)
RLAPACK := $(shell $(R_HOME)/bin/R CMD config LAPACK_LIBS)
RCPPINCL := $(shell echo 'Rcpp:::CxxFlags()' | $(R_HOME)/bin/R --vanilla --slave)
RCPPLIBS := $(shell echo 'Rcpp:::LdFlags()' | $(R_HOME)/bin/R --vanilla --slave)
RINSIDEINCL := $(shell echo 'RInside:::CxxFlags()' | $(R_HOME)/bin/R --vanilla --slave)
RINSIDELIBS := $(shell echo 'RInside:::LdFlags()' | $(R_HOME)/bin/R --vanilla --slave)
# feed to opp_makemake
DEFINES += $(RCPPFLAGS) $(RCPPINCL) $(RINSIDEINCL) $(shell $(R_HOME)/bin/R CMD config CPPFLAGS) $(shell $(R_HOME)/bin/R CMD config CXXFLAGS)
LIBS += $(RLDFLAGS) $(RRPATH) $(RBLAS) $(RLAPACK) $(RCPPLIBS) $(RINSIDELIBS)
After that, I could use R inside Veins. I tried this by copying code from RInside rinside_sample0.cpp to Veins BaseConnectionManager.cc as follows:
diff --git a/src/veins/base/connectionManager/BaseConnectionManager.cc b/src/veins/base/connectionManager/BaseConnectionManager.cc
index 879e90d244..8e9eba10e8 100644
--- a/src/veins/base/connectionManager/BaseConnectionManager.cc
+++ b/src/veins/base/connectionManager/BaseConnectionManager.cc
## -1,3 +1,5 ##
+#include <RInside.h>
+
#include "veins/base/connectionManager/BaseConnectionManager.h"
#include "veins/base/connectionManager/NicEntryDebug.h"
## -42,6 +44,12 ## void BaseConnectionManager::initialize(int stage)
// BaseModule::initialize(stage);
if (stage == 0) {
+
+ // Hello R!
+ RInside R;
+ R["txt"] = "Hello, world!\n";
+ R.parseEvalQ("cat(txt)");
+
drawMIR = hasPar("drawMaxIntfDist") ? par("drawMaxIntfDist").boolValue() : false;
EV_TRACE << "initializing BaseConnectionManager\n";
Compiling Veins (./configure followed by make) and running the tutorial example (cd examples/veins followed by ./run -u Cmdenv) produced the desired output:
OMNeT++ Discrete Event Simulation (C) 1992-2018 Andras Varga, OpenSim Ltd.
Version: 5.4.1, build: 180629-5e28390, edition: Academic Public License -- NOT FOR COMMERCIAL USE
See the license for distribution terms and warranty disclaimer
Setting up Cmdenv...
Loading NED files from ../../src/veins: 41
Loading NED files from .: 1
Loading NED files from /Users/sommer/src/veins/examples/veins: 1
Preparing for running configuration General, run #0...
Assigned runID=General-0-20190308-18:16:24-23603
Setting up network "RSUExampleScenario"...
Initializing...
Hello, world!
Running simulation...
(Note the Hello, world! output during initialization of the simulation.)
Building on Windows will likely mean copying lines from the RInside examples Makefile.win file instead.

error installing Caffe on Mac 10.12 (Sierra) "symbol(s) not found for architecture x86_64"

i have been trying to set up Caffe on my macbook for three days now... maybe you can help me?
i followed several tutorials including these:
the official berkeley vision caffe installation guide
https://gist.github.com/kylemcdonald/0698c7749e483cd43a0e
https://eddiesmo.wordpress.com/2016/12/20/how-to-set-up-caffe-environment-and-pycaffe-on-os-x-10-12-sierra/
but whenever i try to run
make all
i get this error:
LD -o .build_release/lib/libcaffe.so.1.0.0
clang: warning: argument unused during compilation: '-pthread'
Undefined symbols for architecture x86_64:
"cv::String::deallocate()", referenced from:
caffe::WindowDataLayer<float>::load_batch(caffe::Batch<float>*) in window_data_layer.o
..............
..............
..............
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [.build_release/lib/libcaffe.so.1.0.0] Error 1
here's what i did so far:
i was originally on mac os 10.11 el capitan with an outdated xcode (7.3). in order to update xcode i had to upgrade to Sierra (mac os 10.12)
i have xcode 8 now, but downgraded the xcode command line tools to 7.3.2. (i can't remember why but it was recommended for Caffe or maybe CUDA)
i don't have an NVIDIA graphics card but still installed CUDA (from what i read online it's a prerequisite for caffe)... i tried cuda 7 (as recommended on the berkeley vision site) and currently cuda 8
right now i'm using CUDA-8
i used homebrew to install opencv as recommended online (opencv 2.4.13.2)
i use openBLAS
i use protobuf 3.3.0
i added opencv_highgui opencv_imgproc opencv_core opencv_imgcodecs to LIBRARIES in Makefile
i realize that the linker errors have to do with libc++ vs libstdc++ ! i manually checked all kinds of dependencies with otool -L to see if any still used libstdc++ but it seems they should all be built with libc++.
any hints or advice?
pls help!
thank you!
Makefile
PROJECT := caffe
CONFIG_FILE := Makefile.config
# Explicitly check for the config file, otherwise make -k will proceed anyway.
ifeq ($(wildcard $(CONFIG_FILE)),)
$(error $(CONFIG_FILE) not found. See $(CONFIG_FILE).example.)
endif
include $(CONFIG_FILE)
BUILD_DIR_LINK := $(BUILD_DIR)
ifeq ($(RELEASE_BUILD_DIR),)
RELEASE_BUILD_DIR := .$(BUILD_DIR)_release
endif
ifeq ($(DEBUG_BUILD_DIR),)
DEBUG_BUILD_DIR := .$(BUILD_DIR)_debug
endif
DEBUG ?= 0
ifeq ($(DEBUG), 1)
BUILD_DIR := $(DEBUG_BUILD_DIR)
OTHER_BUILD_DIR := $(RELEASE_BUILD_DIR)
else
BUILD_DIR := $(RELEASE_BUILD_DIR)
OTHER_BUILD_DIR := $(DEBUG_BUILD_DIR)
endif
# All of the directories containing code.
SRC_DIRS := $(shell find * -type d -exec bash -c "find {} -maxdepth 1 \
\( -name '*.cpp' -o -name '*.proto' \) | grep -q ." \; -print)
# The target shared library name
LIBRARY_NAME := $(PROJECT)
LIB_BUILD_DIR := $(BUILD_DIR)/lib
STATIC_NAME := $(LIB_BUILD_DIR)/lib$(LIBRARY_NAME).a
DYNAMIC_VERSION_MAJOR := 1
DYNAMIC_VERSION_MINOR := 0
DYNAMIC_VERSION_REVISION := 0
DYNAMIC_NAME_SHORT := lib$(LIBRARY_NAME).so
#DYNAMIC_SONAME_SHORT := $(DYNAMIC_NAME_SHORT).$(DYNAMIC_VERSION_MAJOR)
DYNAMIC_VERSIONED_NAME_SHORT := $(DYNAMIC_NAME_SHORT).$(DYNAMIC_VERSION_MAJOR).$(DYNAMIC_VERSION_MINOR).$(DYNAMIC_VERSION_REVISION)
DYNAMIC_NAME := $(LIB_BUILD_DIR)/$(DYNAMIC_VERSIONED_NAME_SHORT)
COMMON_FLAGS += -DCAFFE_VERSION=$(DYNAMIC_VERSION_MAJOR).$(DYNAMIC_VERSION_MINOR).$(DYNAMIC_VERSION_REVISION)
##############################
# Get all source files
##############################
# CXX_SRCS are the source files excluding the test ones.
CXX_SRCS := $(shell find src/$(PROJECT) ! -name "test_*.cpp" -name "*.cpp")
# CU_SRCS are the cuda source files
CU_SRCS := $(shell find src/$(PROJECT) ! -name "test_*.cu" -name "*.cu")
# TEST_SRCS are the test source files
TEST_MAIN_SRC := src/$(PROJECT)/test/test_caffe_main.cpp
TEST_SRCS := $(shell find src/$(PROJECT) -name "test_*.cpp")
TEST_SRCS := $(filter-out $(TEST_MAIN_SRC), $(TEST_SRCS))
TEST_CU_SRCS := $(shell find src/$(PROJECT) -name "test_*.cu")
GTEST_SRC := src/gtest/gtest-all.cpp
# TOOL_SRCS are the source files for the tool binaries
TOOL_SRCS := $(shell find tools -name "*.cpp")
# EXAMPLE_SRCS are the source files for the example binaries
EXAMPLE_SRCS := $(shell find examples -name "*.cpp")
# BUILD_INCLUDE_DIR contains any generated header files we want to include.
BUILD_INCLUDE_DIR := $(BUILD_DIR)/src
# PROTO_SRCS are the protocol buffer definitions
PROTO_SRC_DIR := src/$(PROJECT)/proto
PROTO_SRCS := $(wildcard $(PROTO_SRC_DIR)/*.proto)
# PROTO_BUILD_DIR will contain the .cc and obj files generated from
# PROTO_SRCS; PROTO_BUILD_INCLUDE_DIR will contain the .h header files
PROTO_BUILD_DIR := $(BUILD_DIR)/$(PROTO_SRC_DIR)
PROTO_BUILD_INCLUDE_DIR := $(BUILD_INCLUDE_DIR)/$(PROJECT)/proto
# NONGEN_CXX_SRCS includes all source/header files except those generated
# automatically (e.g., by proto).
NONGEN_CXX_SRCS := $(shell find \
src/$(PROJECT) \
include/$(PROJECT) \
python/$(PROJECT) \
matlab/+$(PROJECT)/private \
examples \
tools \
-name "*.cpp" -or -name "*.hpp" -or -name "*.cu" -or -name "*.cuh")
LINT_SCRIPT := scripts/cpp_lint.py
LINT_OUTPUT_DIR := $(BUILD_DIR)/.lint
LINT_EXT := lint.txt
LINT_OUTPUTS := $(addsuffix .$(LINT_EXT), $(addprefix $(LINT_OUTPUT_DIR)/, $(NONGEN_CXX_SRCS)))
EMPTY_LINT_REPORT := $(BUILD_DIR)/.$(LINT_EXT)
NONEMPTY_LINT_REPORT := $(BUILD_DIR)/$(LINT_EXT)
# PY$(PROJECT)_SRC is the python wrapper for $(PROJECT)
PY$(PROJECT)_SRC := python/$(PROJECT)/_$(PROJECT).cpp
PY$(PROJECT)_SO := python/$(PROJECT)/_$(PROJECT).so
PY$(PROJECT)_HXX := include/$(PROJECT)/layers/python_layer.hpp
# MAT$(PROJECT)_SRC is the mex entrance point of matlab package for $(PROJECT)
MAT$(PROJECT)_SRC := matlab/+$(PROJECT)/private/$(PROJECT)_.cpp
ifneq ($(MATLAB_DIR),)
MAT_SO_EXT := $(shell $(MATLAB_DIR)/bin/mexext)
endif
MAT$(PROJECT)_SO := matlab/+$(PROJECT)/private/$(PROJECT)_.$(MAT_SO_EXT)
##############################
# Derive generated files
##############################
# The generated files for protocol buffers
PROTO_GEN_HEADER_SRCS := $(addprefix $(PROTO_BUILD_DIR)/, \
$(notdir ${PROTO_SRCS:.proto=.pb.h}))
PROTO_GEN_HEADER := $(addprefix $(PROTO_BUILD_INCLUDE_DIR)/, \
$(notdir ${PROTO_SRCS:.proto=.pb.h}))
PROTO_GEN_CC := $(addprefix $(BUILD_DIR)/, ${PROTO_SRCS:.proto=.pb.cc})
PY_PROTO_BUILD_DIR := python/$(PROJECT)/proto
PY_PROTO_INIT := python/$(PROJECT)/proto/__init__.py
PROTO_GEN_PY := $(foreach file,${PROTO_SRCS:.proto=_pb2.py}, \
$(PY_PROTO_BUILD_DIR)/$(notdir $(file)))
# The objects corresponding to the source files
# These objects will be linked into the final shared library, so we
# exclude the tool, example, and test objects.
CXX_OBJS := $(addprefix $(BUILD_DIR)/, ${CXX_SRCS:.cpp=.o})
CU_OBJS := $(addprefix $(BUILD_DIR)/cuda/, ${CU_SRCS:.cu=.o})
PROTO_OBJS := ${PROTO_GEN_CC:.cc=.o}
OBJS := $(PROTO_OBJS) $(CXX_OBJS) $(CU_OBJS)
# tool, example, and test objects
TOOL_OBJS := $(addprefix $(BUILD_DIR)/, ${TOOL_SRCS:.cpp=.o})
TOOL_BUILD_DIR := $(BUILD_DIR)/tools
TEST_CXX_BUILD_DIR := $(BUILD_DIR)/src/$(PROJECT)/test
TEST_CU_BUILD_DIR := $(BUILD_DIR)/cuda/src/$(PROJECT)/test
TEST_CXX_OBJS := $(addprefix $(BUILD_DIR)/, ${TEST_SRCS:.cpp=.o})
TEST_CU_OBJS := $(addprefix $(BUILD_DIR)/cuda/, ${TEST_CU_SRCS:.cu=.o})
TEST_OBJS := $(TEST_CXX_OBJS) $(TEST_CU_OBJS)
GTEST_OBJ := $(addprefix $(BUILD_DIR)/, ${GTEST_SRC:.cpp=.o})
EXAMPLE_OBJS := $(addprefix $(BUILD_DIR)/, ${EXAMPLE_SRCS:.cpp=.o})
# Output files for automatic dependency generation
DEPS := ${CXX_OBJS:.o=.d} ${CU_OBJS:.o=.d} ${TEST_CXX_OBJS:.o=.d} \
${TEST_CU_OBJS:.o=.d} $(BUILD_DIR)/${MAT$(PROJECT)_SO:.$(MAT_SO_EXT)=.d}
# tool, example, and test bins
TOOL_BINS := ${TOOL_OBJS:.o=.bin}
EXAMPLE_BINS := ${EXAMPLE_OBJS:.o=.bin}
# symlinks to tool bins without the ".bin" extension
TOOL_BIN_LINKS := ${TOOL_BINS:.bin=}
# Put the test binaries in build/test for convenience.
TEST_BIN_DIR := $(BUILD_DIR)/test
TEST_CU_BINS := $(addsuffix .testbin,$(addprefix $(TEST_BIN_DIR)/, \
$(foreach obj,$(TEST_CU_OBJS),$(basename $(notdir $(obj))))))
TEST_CXX_BINS := $(addsuffix .testbin,$(addprefix $(TEST_BIN_DIR)/, \
$(foreach obj,$(TEST_CXX_OBJS),$(basename $(notdir $(obj))))))
TEST_BINS := $(TEST_CXX_BINS) $(TEST_CU_BINS)
# TEST_ALL_BIN is the test binary that links caffe dynamically.
TEST_ALL_BIN := $(TEST_BIN_DIR)/test_all.testbin
##############################
# Derive compiler warning dump locations
##############################
WARNS_EXT := warnings.txt
CXX_WARNS := $(addprefix $(BUILD_DIR)/, ${CXX_SRCS:.cpp=.o.$(WARNS_EXT)})
CU_WARNS := $(addprefix $(BUILD_DIR)/cuda/, ${CU_SRCS:.cu=.o.$(WARNS_EXT)})
TOOL_WARNS := $(addprefix $(BUILD_DIR)/, ${TOOL_SRCS:.cpp=.o.$(WARNS_EXT)})
EXAMPLE_WARNS := $(addprefix $(BUILD_DIR)/, ${EXAMPLE_SRCS:.cpp=.o.$(WARNS_EXT)})
TEST_WARNS := $(addprefix $(BUILD_DIR)/, ${TEST_SRCS:.cpp=.o.$(WARNS_EXT)})
TEST_CU_WARNS := $(addprefix $(BUILD_DIR)/cuda/, ${TEST_CU_SRCS:.cu=.o.$(WARNS_EXT)})
ALL_CXX_WARNS := $(CXX_WARNS) $(TOOL_WARNS) $(EXAMPLE_WARNS) $(TEST_WARNS)
ALL_CU_WARNS := $(CU_WARNS) $(TEST_CU_WARNS)
ALL_WARNS := $(ALL_CXX_WARNS) $(ALL_CU_WARNS)
EMPTY_WARN_REPORT := $(BUILD_DIR)/.$(WARNS_EXT)
NONEMPTY_WARN_REPORT := $(BUILD_DIR)/$(WARNS_EXT)
##############################
# Derive include and lib directories
##############################
CUDA_INCLUDE_DIR := $(CUDA_DIR)/include
CUDA_LIB_DIR :=
# add <cuda>/lib64 only if it exists
ifneq ("$(wildcard $(CUDA_DIR)/lib64)","")
CUDA_LIB_DIR += $(CUDA_DIR)/lib64
endif
CUDA_LIB_DIR += $(CUDA_DIR)/lib
INCLUDE_DIRS += $(BUILD_INCLUDE_DIR) ./src ./include
ifneq ($(CPU_ONLY), 1)
INCLUDE_DIRS += $(CUDA_INCLUDE_DIR)
LIBRARY_DIRS += $(CUDA_LIB_DIR)
LIBRARIES := cudart cublas curand
endif
LIBRARIES += glog gflags protobuf boost_system boost_filesystem m hdf5_hl hdf5 opencv_highgui opencv_imgproc opencv_core pthread
# handle IO dependencies
USE_LEVELDB ?= 1
USE_LMDB ?= 1
USE_OPENCV ?= 1
ifeq ($(USE_LEVELDB), 1)
LIBRARIES += leveldb snappy
endif
ifeq ($(USE_LMDB), 1)
LIBRARIES += lmdb
endif
ifeq ($(USE_OPENCV), 1)
LIBRARIES += opencv_core opencv_highgui opencv_imgproc
ifeq ($(OPENCV_VERSION), 3)
LIBRARIES += opencv_imgcodecs
endif
endif
PYTHON_LIBRARIES ?= boost_python python2.7
WARNINGS := -Wall -Wno-sign-compare
##############################
# Set build directories
##############################
DISTRIBUTE_DIR ?= distribute
DISTRIBUTE_SUBDIRS := $(DISTRIBUTE_DIR)/bin $(DISTRIBUTE_DIR)/lib
DIST_ALIASES := dist
ifneq ($(strip $(DISTRIBUTE_DIR)),distribute)
DIST_ALIASES += distribute
endif
ALL_BUILD_DIRS := $(sort $(BUILD_DIR) $(addprefix $(BUILD_DIR)/, $(SRC_DIRS)) \
$(addprefix $(BUILD_DIR)/cuda/, $(SRC_DIRS)) \
$(LIB_BUILD_DIR) $(TEST_BIN_DIR) $(PY_PROTO_BUILD_DIR) $(LINT_OUTPUT_DIR) \
$(DISTRIBUTE_SUBDIRS) $(PROTO_BUILD_INCLUDE_DIR))
##############################
# Set directory for Doxygen-generated documentation
##############################
DOXYGEN_CONFIG_FILE ?= ./.Doxyfile
# should be the same as OUTPUT_DIRECTORY in the .Doxyfile
DOXYGEN_OUTPUT_DIR ?= ./doxygen
DOXYGEN_COMMAND ?= doxygen
# All the files that might have Doxygen documentation.
DOXYGEN_SOURCES := $(shell find \
src/$(PROJECT) \
include/$(PROJECT) \
python/ \
matlab/ \
examples \
tools \
-name "*.cpp" -or -name "*.hpp" -or -name "*.cu" -or -name "*.cuh" -or \
-name "*.py" -or -name "*.m")
DOXYGEN_SOURCES += $(DOXYGEN_CONFIG_FILE)
##############################
# Configure build
##############################
# Determine platform
UNAME := $(shell uname -s)
ifeq ($(UNAME), Linux)
LINUX := 1
else ifeq ($(UNAME), Darwin)
OSX := 1
OSX_MAJOR_VERSION := $(shell sw_vers -productVersion | cut -f 1 -d .)
OSX_MINOR_VERSION := $(shell sw_vers -productVersion | cut -f 2 -d .)
endif
# Linux
ifeq ($(LINUX), 1)
CXX ?= /usr/bin/g++
GCCVERSION := $(shell $(CXX) -dumpversion | cut -f1,2 -d.)
# older versions of gcc are too dumb to build boost with -Wuninitalized
ifeq ($(shell echo | awk '{exit $(GCCVERSION) < 4.6;}'), 1)
WARNINGS += -Wno-uninitialized
endif
# boost::thread is reasonably called boost_thread (compare OS X)
# We will also explicitly add stdc++ to the link target.
LIBRARIES += boost_thread stdc++
VERSIONFLAGS += -Wl,-soname,$(DYNAMIC_VERSIONED_NAME_SHORT) -Wl,-rpath,$(ORIGIN)/../lib
endif
# OS X:
# clang++ instead of g++
# libstdc++ for NVCC compatibility on OS X >= 10.9 with CUDA < 7.0
ifeq ($(OSX), 1)
CXX := /usr/bin/clang++
ifneq ($(CPU_ONLY), 1)
CUDA_VERSION := $(shell $(CUDA_DIR)/bin/nvcc -V | grep -o 'release [0-9.]*' | tr -d '[a-z ]')
ifeq ($(shell echo | awk '{exit $(CUDA_VERSION) < 7.0;}'), 1)
CXXFLAGS += -stdlib=libstdc++
LINKFLAGS += -stdlib=libstdc++
endif
# clang throws this warning for cuda headers
WARNINGS += -Wno-unneeded-internal-declaration
# 10.11 strips DYLD_* env vars so link CUDA (rpath is available on 10.5+)
OSX_10_OR_LATER := $(shell [ $(OSX_MAJOR_VERSION) -ge 10 ] && echo true)
OSX_10_5_OR_LATER := $(shell [ $(OSX_MINOR_VERSION) -ge 5 ] && echo true)
ifeq ($(OSX_10_OR_LATER),true)
ifeq ($(OSX_10_5_OR_LATER),true)
LDFLAGS += -Wl,-rpath,$(CUDA_LIB_DIR)
endif
endif
endif
# gtest needs to use its own tuple to not conflict with clang
COMMON_FLAGS += -DGTEST_USE_OWN_TR1_TUPLE=1
# boost::thread is called boost_thread-mt to mark multithreading on OS X
LIBRARIES += boost_thread-mt
# we need to explicitly ask for the rpath to be obeyed
ORIGIN := #loader_path
VERSIONFLAGS += -Wl,-install_name,#rpath/$(DYNAMIC_VERSIONED_NAME_SHORT) -Wl,-rpath,$(ORIGIN)/../../build/lib
else
ORIGIN := \$$ORIGIN
endif
# Custom compiler
ifdef CUSTOM_CXX
CXX := $(CUSTOM_CXX)
endif
# Static linking
ifneq (,$(findstring clang++,$(CXX)))
STATIC_LINK_COMMAND := -Wl,-force_load $(STATIC_NAME)
else ifneq (,$(findstring g++,$(CXX)))
STATIC_LINK_COMMAND := -Wl,--whole-archive $(STATIC_NAME) -Wl,--no-whole-archive
else
# The following line must not be indented with a tab, since we are not inside a target
$(error Cannot static link with the $(CXX) compiler)
endif
# Debugging
ifeq ($(DEBUG), 1)
COMMON_FLAGS += -DDEBUG -g -O0
NVCCFLAGS += -G
else
COMMON_FLAGS += -DNDEBUG -O2
endif
# cuDNN acceleration configuration.
ifeq ($(USE_CUDNN), 1)
LIBRARIES += cudnn
COMMON_FLAGS += -DUSE_CUDNN
endif
# NCCL acceleration configuration
ifeq ($(USE_NCCL), 1)
LIBRARIES += nccl
COMMON_FLAGS += -DUSE_NCCL
endif
# configure IO libraries
ifeq ($(USE_OPENCV), 1)
COMMON_FLAGS += -DUSE_OPENCV
endif
ifeq ($(USE_LEVELDB), 1)
COMMON_FLAGS += -DUSE_LEVELDB
endif
ifeq ($(USE_LMDB), 1)
COMMON_FLAGS += -DUSE_LMDB
ifeq ($(ALLOW_LMDB_NOLOCK), 1)
COMMON_FLAGS += -DALLOW_LMDB_NOLOCK
endif
endif
# CPU-only configuration
ifeq ($(CPU_ONLY), 1)
OBJS := $(PROTO_OBJS) $(CXX_OBJS)
TEST_OBJS := $(TEST_CXX_OBJS)
TEST_BINS := $(TEST_CXX_BINS)
ALL_WARNS := $(ALL_CXX_WARNS)
TEST_FILTER := --gtest_filter="-*GPU*"
COMMON_FLAGS += -DCPU_ONLY
endif
# Python layer support
ifeq ($(WITH_PYTHON_LAYER), 1)
COMMON_FLAGS += -DWITH_PYTHON_LAYER
LIBRARIES += $(PYTHON_LIBRARIES)
endif
# BLAS configuration (default = ATLAS)
BLAS ?= atlas
ifeq ($(BLAS), mkl)
# MKL
LIBRARIES += mkl_rt
COMMON_FLAGS += -DUSE_MKL
MKLROOT ?= /opt/intel/mkl
BLAS_INCLUDE ?= $(MKLROOT)/include
BLAS_LIB ?= $(MKLROOT)/lib $(MKLROOT)/lib/intel64
else ifeq ($(BLAS), open)
# OpenBLAS
LIBRARIES += openblas
else
# ATLAS
ifeq ($(LINUX), 1)
ifeq ($(BLAS), atlas)
# Linux simply has cblas and atlas
LIBRARIES += cblas atlas
endif
else ifeq ($(OSX), 1)
# OS X packages atlas as the vecLib framework
LIBRARIES += cblas
# 10.10 has accelerate while 10.9 has veclib
XCODE_CLT_VER := $(shell pkgutil --pkg-info=com.apple.pkg.CLTools_Executables | grep 'version' | sed 's/[^0-9]*\([0-9]\).*/\1/')
XCODE_CLT_GEQ_7 := $(shell [ $(XCODE_CLT_VER) -gt 6 ] && echo 1)
XCODE_CLT_GEQ_6 := $(shell [ $(XCODE_CLT_VER) -gt 5 ] && echo 1)
ifeq ($(XCODE_CLT_GEQ_7), 1)
BLAS_INCLUDE ?= /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/$(shell ls /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/ | sort | tail -1)/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/Headers
else ifeq ($(XCODE_CLT_GEQ_6), 1)
BLAS_INCLUDE ?= /System/Library/Frameworks/Accelerate.framework/Versions/Current/Frameworks/vecLib.framework/Headers/
LDFLAGS += -framework Accelerate
else
BLAS_INCLUDE ?= /Users/sarah/caffe/OpenBLAS
#/System/Library/Frameworks/vecLib.framework/Versions/Current/Headers/
LDFLAGS += -framework Accelerate
#vecLib
endif
endif
endif
INCLUDE_DIRS += $(BLAS_INCLUDE)
LIBRARY_DIRS += $(BLAS_LIB)
LIBRARY_DIRS += $(LIB_BUILD_DIR)
# Automatic dependency generation (nvcc is handled separately)
CXXFLAGS += -MMD -MP
# Complete build flags.
COMMON_FLAGS += $(foreach includedir,$(INCLUDE_DIRS),-I$(includedir))
CXXFLAGS += -pthread -fPIC $(COMMON_FLAGS) $(WARNINGS)
NVCCFLAGS += -ccbin=$(CXX) -Xcompiler -fPIC $(COMMON_FLAGS)
# mex may invoke an older gcc that is too liberal with -Wuninitalized
MATLAB_CXXFLAGS := $(CXXFLAGS) -Wno-uninitialized
LINKFLAGS += -pthread -fPIC $(COMMON_FLAGS) $(WARNINGS)
USE_PKG_CONFIG ?= 0
ifeq ($(USE_PKG_CONFIG), 1)
PKG_CONFIG := $(shell pkg-config opencv --libs)
else
PKG_CONFIG :=
endif
LDFLAGS += $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(PKG_CONFIG) \
$(foreach library,$(LIBRARIES),-l$(library))
PYTHON_LDFLAGS := $(LDFLAGS) $(foreach library,$(PYTHON_LIBRARIES),-l$(library))
# 'superclean' target recursively* deletes all files ending with an extension
# in $(SUPERCLEAN_EXTS) below. This may be useful if you've built older
# versions of Caffe that do not place all generated files in a location known
# to the 'clean' target.
#
# 'supercleanlist' will list the files to be deleted by make superclean.
#
# * Recursive with the exception that symbolic links are never followed, per the
# default behavior of 'find'.
SUPERCLEAN_EXTS := .so .a .o .bin .testbin .pb.cc .pb.h _pb2.py .cuo
# Set the sub-targets of the 'everything' target.
EVERYTHING_TARGETS := all py$(PROJECT) test warn lint
# Only build matcaffe as part of "everything" if MATLAB_DIR is specified.
ifneq ($(MATLAB_DIR),)
EVERYTHING_TARGETS += mat$(PROJECT)
endif
##############################
# Define build targets
##############################
.PHONY: all lib test clean docs linecount lint lintclean tools examples $(DIST_ALIASES) \
py mat py$(PROJECT) mat$(PROJECT) proto runtest \
superclean supercleanlist supercleanfiles warn everything
all: lib tools examples
lib: $(STATIC_NAME) $(DYNAMIC_NAME)
everything: $(EVERYTHING_TARGETS)
linecount:
cloc --read-lang-def=$(PROJECT).cloc \
src/$(PROJECT) include/$(PROJECT) tools examples \
python matlab
lint: $(EMPTY_LINT_REPORT)
lintclean:
# $(RM) -r $(LINT_OUTPUT_DIR) $(EMPTY_LINT_REPORT) $(NONEMPTY_LINT_REPORT)
docs: $(DOXYGEN_OUTPUT_DIR)
# cd ./docs ; ln -sfn ../$(DOXYGEN_OUTPUT_DIR)/html doxygen
$(DOXYGEN_OUTPUT_DIR): $(DOXYGEN_CONFIG_FILE) $(DOXYGEN_SOURCES)
$(DOXYGEN_COMMAND) $(DOXYGEN_CONFIG_FILE)
$(EMPTY_LINT_REPORT): $(LINT_OUTPUTS) | $(BUILD_DIR)
# cat $(LINT_OUTPUTS) > $#
# if [ -s "$#" ]; then \
cat $#; \
mv $# $(NONEMPTY_LINT_REPORT); \
echo "Found one or more lint errors."; \
exit 1; \
fi; \
$(RM) $(NONEMPTY_LINT_REPORT); \
echo "No lint errors!";
$(LINT_OUTPUTS): $(LINT_OUTPUT_DIR)/%.lint.txt : % $(LINT_SCRIPT) | $(LINT_OUTPUT_DIR)
# mkdir -p $(dir $#)
# python $(LINT_SCRIPT) $< 2>&1 \
| grep -v "^Done processing " \
| grep -v "^Total errors found: 0" \
> $# \
|| true
test: $(TEST_ALL_BIN) $(TEST_ALL_DYNLINK_BIN) $(TEST_BINS)
tools: $(TOOL_BINS) $(TOOL_BIN_LINKS)
examples: $(EXAMPLE_BINS)
py$(PROJECT): py
py: $(PY$(PROJECT)_SO) $(PROTO_GEN_PY)
$(PY$(PROJECT)_SO): $(PY$(PROJECT)_SRC) $(PY$(PROJECT)_HXX) | $(DYNAMIC_NAME)
# echo CXX/LD -o $# $<
$(Q)$(CXX) -shared -o $# $(PY$(PROJECT)_SRC) \
-o $# $(LINKFLAGS) -l$(LIBRARY_NAME) $(PYTHON_LDFLAGS) \
-Wl,-rpath,$(ORIGIN)/../../build/lib
mat$(PROJECT): mat
mat: $(MAT$(PROJECT)_SO)
$(MAT$(PROJECT)_SO): $(MAT$(PROJECT)_SRC) $(STATIC_NAME)
# if [ -z "$(MATLAB_DIR)" ]; then \
echo "MATLAB_DIR must be specified in $(CONFIG_FILE)" \
"to build mat$(PROJECT)."; \
exit 1; \
fi
# echo MEX $<
$(Q)$(MATLAB_DIR)/bin/mex $(MAT$(PROJECT)_SRC) \
CXX="$(CXX)" \
CXXFLAGS="\$$CXXFLAGS $(MATLAB_CXXFLAGS)" \
CXXLIBS="\$$CXXLIBS $(STATIC_LINK_COMMAND) $(LDFLAGS)" -output $#
# if [ -f "$(PROJECT)_.d" ]; then \
mv -f $(PROJECT)_.d $(BUILD_DIR)/${MAT$(PROJECT)_SO:.$(MAT_SO_EXT)=.d}; \
fi
runtest: $(TEST_ALL_BIN)
$(TOOL_BUILD_DIR)/caffe
$(TEST_ALL_BIN) $(TEST_GPUID) --gtest_shuffle $(TEST_FILTER)
pytest: py
cd python; python -m unittest discover -s caffe/test
mattest: mat
cd matlab; $(MATLAB_DIR)/bin/matlab -nodisplay -r 'caffe.run_tests(), exit()'
warn: $(EMPTY_WARN_REPORT)
$(EMPTY_WARN_REPORT): $(ALL_WARNS) | $(BUILD_DIR)
# cat $(ALL_WARNS) > $#
# if [ -s "$#" ]; then \
cat $#; \
mv $# $(NONEMPTY_WARN_REPORT); \
echo "Compiler produced one or more warnings."; \
exit 1; \
fi; \
$(RM) $(NONEMPTY_WARN_REPORT); \
echo "No compiler warnings!";
$(ALL_WARNS): %.o.$(WARNS_EXT) : %.o
$(BUILD_DIR_LINK): $(BUILD_DIR)/.linked
# Create a target ".linked" in this BUILD_DIR to tell Make that the "build" link
# is currently correct, then delete the one in the OTHER_BUILD_DIR in case it
# exists and $(DEBUG) is toggled later.
$(BUILD_DIR)/.linked:
# mkdir -p $(BUILD_DIR)
# $(RM) $(OTHER_BUILD_DIR)/.linked
# $(RM) -r $(BUILD_DIR_LINK)
# ln -s $(BUILD_DIR) $(BUILD_DIR_LINK)
# touch $#
$(ALL_BUILD_DIRS): | $(BUILD_DIR_LINK)
# mkdir -p $#
$(DYNAMIC_NAME): $(OBJS) | $(LIB_BUILD_DIR)
# echo LD -o $#
$(Q)$(CXX) -shared -o $# $(OBJS) $(VERSIONFLAGS) $(LINKFLAGS) $(LDFLAGS)
# cd $(BUILD_DIR)/lib; rm -f $(DYNAMIC_NAME_SHORT); ln -s $(DYNAMIC_VERSIONED_NAME_SHORT) $(DYNAMIC_NAME_SHORT)
$(STATIC_NAME): $(OBJS) | $(LIB_BUILD_DIR)
# echo AR -o $#
$(Q)ar rcs $# $(OBJS)
$(BUILD_DIR)/%.o: %.cpp | $(ALL_BUILD_DIRS)
# echo CXX $<
$(Q)$(CXX) $< $(CXXFLAGS) -c -o $# 2> $#.$(WARNS_EXT) \
|| (cat $#.$(WARNS_EXT); exit 1)
# cat $#.$(WARNS_EXT)
$(PROTO_BUILD_DIR)/%.pb.o: $(PROTO_BUILD_DIR)/%.pb.cc $(PROTO_GEN_HEADER) \
| $(PROTO_BUILD_DIR)
# echo CXX $<
$(Q)$(CXX) $< $(CXXFLAGS) -c -o $# 2> $#.$(WARNS_EXT) \
|| (cat $#.$(WARNS_EXT); exit 1)
# cat $#.$(WARNS_EXT)
$(BUILD_DIR)/cuda/%.o: %.cu | $(ALL_BUILD_DIRS)
# echo NVCC $<
$(Q)$(CUDA_DIR)/bin/nvcc $(NVCCFLAGS) $(CUDA_ARCH) -M $< -o ${#:.o=.d} \
-odir $(#D)
$(Q)$(CUDA_DIR)/bin/nvcc $(NVCCFLAGS) $(CUDA_ARCH) -c $< -o $# 2> $#.$(WARNS_EXT) \
|| (cat $#.$(WARNS_EXT); exit 1)
# cat $#.$(WARNS_EXT)
$(TEST_ALL_BIN): $(TEST_MAIN_SRC) $(TEST_OBJS) $(GTEST_OBJ) \
| $(DYNAMIC_NAME) $(TEST_BIN_DIR)
# echo CXX/LD -o $# $<
$(Q)$(CXX) $(TEST_MAIN_SRC) $(TEST_OBJS) $(GTEST_OBJ) \
-o $# $(LINKFLAGS) $(LDFLAGS) -l$(LIBRARY_NAME) -Wl,-rpath,$(ORIGIN)/../lib
$(TEST_CU_BINS): $(TEST_BIN_DIR)/%.testbin: $(TEST_CU_BUILD_DIR)/%.o \
$(GTEST_OBJ) | $(DYNAMIC_NAME) $(TEST_BIN_DIR)
# echo LD $<
$(Q)$(CXX) $(TEST_MAIN_SRC) $< $(GTEST_OBJ) \
-o $# $(LINKFLAGS) $(LDFLAGS) -l$(LIBRARY_NAME) -Wl,-rpath,$(ORIGIN)/../lib
$(TEST_CXX_BINS): $(TEST_BIN_DIR)/%.testbin: $(TEST_CXX_BUILD_DIR)/%.o \
$(GTEST_OBJ) | $(DYNAMIC_NAME) $(TEST_BIN_DIR)
# echo LD $<
$(Q)$(CXX) $(TEST_MAIN_SRC) $< $(GTEST_OBJ) \
-o $# $(LINKFLAGS) $(LDFLAGS) -l$(LIBRARY_NAME) -Wl,-rpath,$(ORIGIN)/../lib
# Target for extension-less symlinks to tool binaries with extension '*.bin'.
$(TOOL_BUILD_DIR)/%: $(TOOL_BUILD_DIR)/%.bin | $(TOOL_BUILD_DIR)
# $(RM) $#
# ln -s $(notdir $<) $#
$(TOOL_BINS): %.bin : %.o | $(DYNAMIC_NAME)
# echo CXX/LD -o $#
$(Q)$(CXX) $< -o $# $(LINKFLAGS) -l$(LIBRARY_NAME) $(LDFLAGS) \
-Wl,-rpath,$(ORIGIN)/../lib
$(EXAMPLE_BINS): %.bin : %.o | $(DYNAMIC_NAME)
# echo CXX/LD -o $#
$(Q)$(CXX) $< -o $# $(LINKFLAGS) -l$(LIBRARY_NAME) $(LDFLAGS) \
-Wl,-rpath,$(ORIGIN)/../../lib
proto: $(PROTO_GEN_CC) $(PROTO_GEN_HEADER)
$(PROTO_BUILD_DIR)/%.pb.cc $(PROTO_BUILD_DIR)/%.pb.h : \
$(PROTO_SRC_DIR)/%.proto | $(PROTO_BUILD_DIR)
# echo PROTOC $<
$(Q)protoc --proto_path=$(PROTO_SRC_DIR) --cpp_out=$(PROTO_BUILD_DIR) $<
$(PY_PROTO_BUILD_DIR)/%_pb2.py : $(PROTO_SRC_DIR)/%.proto \
$(PY_PROTO_INIT) | $(PY_PROTO_BUILD_DIR)
# echo PROTOC \(python\) $<
$(Q)protoc --proto_path=$(PROTO_SRC_DIR) --python_out=$(PY_PROTO_BUILD_DIR) $<
$(PY_PROTO_INIT): | $(PY_PROTO_BUILD_DIR)
touch $(PY_PROTO_INIT)
clean:
#- $(RM) -rf $(ALL_BUILD_DIRS)
#- $(RM) -rf $(OTHER_BUILD_DIR)
#- $(RM) -rf $(BUILD_DIR_LINK)
#- $(RM) -rf $(DISTRIBUTE_DIR)
#- $(RM) $(PY$(PROJECT)_SO)
#- $(RM) $(MAT$(PROJECT)_SO)
supercleanfiles:
$(eval SUPERCLEAN_FILES := $(strip \
$(foreach ext,$(SUPERCLEAN_EXTS), $(shell find . -name '*$(ext)' \
-not -path './data/*'))))
supercleanlist: supercleanfiles
# \
if [ -z "$(SUPERCLEAN_FILES)" ]; then \
echo "No generated files found."; \
else \
echo $(SUPERCLEAN_FILES) | tr ' ' '\n'; \
fi
superclean: clean supercleanfiles
# \
if [ -z "$(SUPERCLEAN_FILES)" ]; then \
echo "No generated files found."; \
else \
echo "Deleting the following generated files:"; \
echo $(SUPERCLEAN_FILES) | tr ' ' '\n'; \
$(RM) $(SUPERCLEAN_FILES); \
fi
$(DIST_ALIASES): $(DISTRIBUTE_DIR)
$(DISTRIBUTE_DIR): all py | $(DISTRIBUTE_SUBDIRS)
# add proto
cp -r src/caffe/proto $(DISTRIBUTE_DIR)/
# add include
cp -r include $(DISTRIBUTE_DIR)/
mkdir -p $(DISTRIBUTE_DIR)/include/caffe/proto
cp $(PROTO_GEN_HEADER_SRCS) $(DISTRIBUTE_DIR)/include/caffe/proto
# add tool and example binaries
cp $(TOOL_BINS) $(DISTRIBUTE_DIR)/bin
cp $(EXAMPLE_BINS) $(DISTRIBUTE_DIR)/bin
# add libraries
cp $(STATIC_NAME) $(DISTRIBUTE_DIR)/lib
install -m 644 $(DYNAMIC_NAME) $(DISTRIBUTE_DIR)/lib
cd $(DISTRIBUTE_DIR)/lib; rm -f $(DYNAMIC_NAME_SHORT); ln -s $(DYNAMIC_VERSIONED_NAME_SHORT) $(DYNAMIC_NAME_SHORT)
# add python - it's not the standard way, indeed...
cp -r python $(DISTRIBUTE_DIR)/python
-include $(DEPS)
Makefile.config
# cuDNN acceleration switch (uncomment to build with cuDNN).
# USE_CUDNN := 1
# CPU-only switch (uncomment to build without GPU support).
CPU_ONLY := 1
# uncomment to disable IO dependencies and corresponding data layers
USE_OPENCV := 0
# USE_LEVELDB := 0
# USE_LMDB := 0
# Uncomment if you're using OpenCV 3
OPENCV_VERSION := 3
# CUDA directory contains bin/ and lib/ directories that we need.
CUDA_DIR := /usr/local/cuda
# On Ubuntu 14.04, if cuda tools are installed via
# "sudo apt-get install nvidia-cuda-toolkit" then use this instead:
# CUDA_DIR := /usr
# CUDA architecture setting: going with all of them.
# For CUDA < 6.0, comment the *_50 lines for compatibility.
CUDA_ARCH := -gencode arch=compute_20,code=sm_20 \
-gencode arch=compute_20,code=sm_21 \
-gencode arch=compute_30,code=sm_30 \
-gencode arch=compute_35,code=sm_35 \
-gencode arch=compute_50,code=sm_50 \
-gencode arch=compute_50,code=compute_50
BLAS := blas
BLAS_INCLUDE := /Users/sarah/caffe/OpenBLAS
BLAS_LIB := /Users/sarah/caffe/OpenBLAS
PYTHON_INCLUDE := /usr/local/lib/python2.7/site-packages/numpy/core/include/ /usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/include/python2.7
PYTHON_LIB := /usr/local/Cellar/python/2.7.13/Frameworks/Python.framework/Versions/2.7/lib/
WITH_PYTHON_LAYER := 1
# Whatever else you find you need goes here.
INCLUDE_DIRS := /usr/local/include /Developer/NVIDIA/CUDA-8.0/include/ $(PYTHON_INCLUDE) /usr/local/opt/opencv3/include
LIBRARY_DIRS := /usr/local/lib /usr/lib /Developer/NVIDIA/CUDA-8.0/lib/ $(PYTHON_LIB) /usr/local/opt/opencv3/lib
# If Homebrew is installed at a non standard location (for example your home directory) and you use it for general dependencies
# INCLUDE_DIRS += $(shell brew --prefix)/include
# LIBRARY_DIRS += $(shell brew --prefix)/lib
# Uncomment to use `pkg-config` to specify OpenCV library paths.
# (Usually not necessary -- OpenCV libraries are normally installed in one of the above $LIBRARY_DIRS.)
# USE_PKG_CONFIG := 1
BUILD_DIR := build
DISTRIBUTE_DIR := distribute
TEST_GPUID := 0
Just a couple of hints and guesses.
This isn't necessarily a libc++/libstd++ inconsistency.
opencv_imgcodecs is only available in OpenCV 3+, so that may make some problems.
If you checked the opencv libraries and they were all linked to libc++, check if this command ld -lopencv_highgui, and for the other libraries as well, won't tell you the library is not found.
Another thing to check is making sure you only have one OpenCV installation, sometimes a conflicting copy may cause these problems.
You may also try to compile a standalone OpenCV example code, to make sure this is a problem with Caffe.
opencv_imgcodecs is only available in OpenCV 3+, so that may make some problems.
One last thing: remove everything, enable the cpu only mode to get rid of CUDA dependency, and this time use the latest version of everything, specifically: Latest Xcode command line tools and OpenCV3.
Posting your Makefile in your question could help, too.
You can set LDFLAGS before execute make all
$ LDFLAGS="`pkg-config --libs protobuf` `pkg-config --libs opencv`"
$ make all

Compiling RInside programs on Windows [duplicate]

This question already has answers here:
Closed 10 years ago.
Possible Duplicate:
Problem with compiling RInside examples under Windows
On Windows XP:
> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
>
I attempted to compile the simplest program written by Dirk:
#include <RInside.h> // for the embedded R via RInside
int main(int argc, char *argv[]) {
RInside R(argc, argv); // create an embedded R instance
R["txt"] = "Hello, world!\n"; // assign a char* (string) to 'txt'
R.parseEvalQ("cat(txt)"); // eval the init string, ignoring any returns
exit(0);
}
The environment variable PATH in all contains this:
%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;C:\R\batchfiles_0.6-6;C:\R\Rtools\bin;C:\R\Rtools\MinGW\bin;C:\Program Files\GnuWin32;C:\"Program Files"\R\R-2.15.1\;
I copied this Makefile from a existing R example of RInside in Windows XP.
## -*- mode: make; tab-width: 8; -*-
##
## Simple Makefile
##
## TODO:
## proper configure for non-Debian file locations, [ Done ]
## allow RHOME to be set for non-default R etc
## comment this out if you need a different version of R,
## and set set R_HOME accordingly as an environment variable
R_HOME := C:\"Program Files"\R\R-2.15.1\
sources := $(wildcard *.cpp)
programs := $(sources:.cpp=)
## include headers and libraries for R
RCPPFLAGS := $(shell $(R_HOME)/bin/R CMD config --cppflags)
RLDFLAGS := $(shell $(R_HOME)/bin/R CMD config --ldflags)
RBLAS := $(shell $(R_HOME)/bin/R CMD config BLAS_LIBS)
RLAPACK := $(shell $(R_HOME)/bin/R CMD config LAPACK_LIBS)
## if you need to set an rpath to R itself, also uncomment
#RRPATH := -Wl,-rpath,$(R_HOME)/lib
## include headers and libraries for Rcpp interface classes
RCPPINCL := $(shell echo 'Rcpp:::CxxFlags()' | $(R_HOME)/bin/R --vanilla --slave)
RCPPLIBS := $(shell echo 'Rcpp:::LdFlags()' | $(R_HOME)/bin/R --vanilla --slave)
## include headers and libraries for RInside embedding classes
RINSIDEINCL := $(shell echo 'RInside:::CxxFlags()' | $(R_HOME)/bin/R --vanilla --slave)
RINSIDELIBS := $(shell echo 'RInside:::LdFlags()' | $(R_HOME)/bin/R --vanilla --slave)
## compiler etc settings used in default make rules
CXX := $(shell $(R_HOME)/bin/R CMD config CXX)
CPPFLAGS := -Wall $(shell $(R_HOME)/bin/R CMD config CPPFLAGS)
CXXFLAGS := $(RCPPFLAGS) $(RCPPINCL) $(RINSIDEINCL) $(shell $(R_HOME)/bin/R CMD config CXXFLAGS)
LDLIBS := $(RLDFLAGS) $(RRPATH) $(RBLAS) $(RLAPACK) $(RCPPLIBS) $(RINSIDELIBS)
all: $(programs)
#test -x /usr/bin/strip && strip $^
run: $(programs)
#for p in $(programs); do echo; echo "Running $$p:"; ./$$p; done
clean:
rm -vf $(programs)
rm -vrf *.dSYM
runAll:
for p in $(programs); do echo "Running $$p"; ./$$p; done
This is my R folder in C drive:
I saw this thread but I don't have anything like site-library in the R folder.
I changed the R_HOME to C:\"Program Files"\R\R-2.15.1, that resulted in the following errors:
It fails because you installed R in C:\Program Files\R even though the FAQ for R on Windows tells you not to install R in a path with spaces. See "Question 2.2: How do I install R for Windows":
If you want to be able to build packages from sources, we recommend
that you choose an installation path not containing spaces.
The Rcpp / RInside documentaion repeats that recommendation. Do not install R in a path with spaces. If you must, you have to fix the Makefile to avoid the path expansion from breaking.
Your path are totally wrong for me: why you use C:\R\Rtools\bin as R_HOME if your R main path is simply C:\R ?
If your R folder is what you've shown in the screenshot, BTW, also your classpath is totally wrong!

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