How to remove sources in maven - maven

I'm using https://jax-ws-commons.java.net/jaxws-maven-plugin/ to generate sources from wsdl files. I'm doing multiple executions(for different wsdls) with different sourceDestDir. This is working as expected and it is generating sources in different directories.
But the plugin is also adding all of these sourceDestDir's to build sources and the maven-compiler-plugin tries to compile them automatically.
I want to prevent this from happening. i.e I want to remove the source directories added by jaxws-maven-plugin so that I can define what should be compiled and what shouldn't be. Is this possible?

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How can Gradle plugin access information about included builds?

I know you can access different modules (included using include) in a project via org.gradle.api.Project#getSubprojects(), and I know you can get the name and directories of separate builds that have been included (using includeBuild) via org.gradle.api.invocation.Gradle#getIncludedBuilds().
But how can my plugin get information such as the locations of Java source files and class files for projects included using includeBuild?
My goal here is to determine which files have changed in the current git branch (which I can do), and then collect their corresponding class files into a jar file that's used for our patching mechanism that inserts the patch jars at the front of the classpath rather than redeploying the whole application.
I don’t think it is a goal of Gradle to provide including builds with detailed information on included builds. Currently, the Gradle docs basically only state two goals for such composite builds:
combine builds that are usually developed independently, […]
decompose a large multi-project build into smaller, more isolated chunks […]
Actually, isolation between the involved builds seems to be an important theme in general:
Included builds do not share any configuration with the composite build, or the other included builds. Each included build is configured and executed in isolation.
For that reason, it also doesn’t seem to be possible or even desired to let an including build consume any build configurations (like task outputs) of an included build. That would only couple the builds and hence thwart the isolation goal.
Included builds interact with other builds only via dependency substitution:
If any build in the composite has a dependency that can be satisfied by the included build, then that dependency will be replaced by a project dependency on the included build.
So, if you’d like to consume specific parts of an included build from the including build, then you have to do multiple things:
Have a configuration in the included build which produces these “specific parts” as an artifact.
Have a configuration in the including build which consumes the artifact as a dependency.
Make sure that both configurations are compatible wrt. their capabilities so that dependency substitution works.
Let some task in the including build use the dependency artifact in whatever way you need.
Those things happen kind of automatically when you have a simple dependency between two Gradle projects, like a Java application depending on a Java library. But you can define your own kinds of dependencies, too.
The question is: would that really be worth the effort? Can’t you maybe solve your goal more easily or at least without relying on programmatically retrieved information on included builds? For example: if you know that your included build produces class files under build/classes/java/main, then maybe just take the classes of interest from there via org.gradle.api.initialization.IncludedBuild#getProjectDir().
I know, this may not be the answer you had hoped to get. I still hope it’s useful.

Custom Maven Plugin: Programmatically Adding Source Directory to Project

As a Maven end-user, it is simple to add an additional directory to the list of source directories that will be compiled during the "compile" phase. I would use the build-helper-maven-plugin approach.
However, in my own custom plugin I would like to do this programmatically. My plugin will generate some java code. I would subsequently like to add the output directory (containing generated .java files) to the list of source paths.
At the moment I’m manually having to set the build-helper-maven-plugin config in all of my POMs to get the files I’m generating to be compiled.
Any pointers on what part of the Maven API to be looking at? My searches have only yielded queries from end-users, which are solved with the build-helper-maven-plugin approach.
To find my answer I took a look at the source code for the ANTLR maven plugin, which I know adds sources to the path. See AbstractAntlrMojo.
The solution is to add a MavenProject member variable to your Mojo with an expression to bind it to the project:
#Parameter(defaultValue="${project}")
private MavenProject project;
Once one has a reference to the project, it's a simple method invocation:
project.addCompileSourceRoot("<DIRECTORY-PATH-HERE>");
This will ensure that the new directories housing generated code will be compiled.

Where in the Maven Standard Directory Layout should generated resources go?

I'd like to generate some resources (JavaHelp search index in this case), but I can't seen to see where those generate files should go to get into the jar. I put them in target/generated-sources, but they are ignored. Should it be target/classes?
/generated-sources directory is used by various tools generating sources (duh!), like xjc or wsdl2java. This directory is later included in the compilation phase.
/target/classes is everything that should be included in the final JAR, which answers your question. Also the contents of /src/main/resources is included, but this directory is typically part of version control and is not meant for generated artifacts.
It turns out that generated-source directories are not automatically included in the jar. However, Intellj assumes there are and treats them as such, hence my confusion.
You need to use the Maven build helper plugin to fix this issue, for example:
https://github.com/alexec/javahelp-skeleton/blob/master/pom.xml

IntelliJ automagically mark a target sub directory as "source"

I use IntelliJ since a few months back now for my Java development. I using IntelliJ as IDE and build my projects using Maven. A couple of my Maven projects generates code which my other Maven projects depends upon, the generated code ends up in a target/src-generated directory with "Maven-subdirectories" main/java, main/resource etc. Is it possible to make IntelliJ automagically mark the target/src-generated/main/java directory as source?
Thanks in advance.
Please refer to the IntelliJ IDEA Maven FAQ:
In order to get generated sources automatically imported as source
folders configure corresponding plugins so that they put them into
target/generated-sources/<subdir>, where subdir is any folder name you
prefer. The subdir folder is necessary to distinguish sources from
different tools and also to exclude some special generated sources
(e.g. groovy stubs).
Please note that even if you manually configure
some source folders under target/generated-sources of this folder
itself, IDEA will rewrite them according to your pom.xml.
Any time you
want to generate sources you simply execute the corresponding goal,
bound for generation (usually generate-sources,
generate-test-sources). After that IDEA will pick up new folders and
set them up. Generated test sources/resources should be placed in
target/generated-test-sources/<subdir>.

In a maven project, is it possible to use a plugin just built within the same project?

Suppose you have some sort of input files which are to be processed in some custom way (even the file format is very particular to the package of files in question).
To process them I decide to make a maven plugin, which happens to be useful only in the context of these files.
Is it possible to have them all (the afore mentioned files and source code for the plugin) in one project, build the plugin, run the plugin over the input files and collect its output as the output of this project?
Short answer is you can't, because Maven resolves plugin classpath on start.
However you can create separate modules, first being a plugin and second would use that plugin to process files. Both modules can be invoked from parent pom.

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