Image similarity index for plant images produced by L-system fractal - image

I have read all that staff about image similarity index on that forum but i think that my subject is kind different because images that i want to compare comes from an L-system generator and as you can see bellow it's hard to find obvious differences. So i couldn't decide which method and software to choose for my problem.
But let's take the story from the beginning. I have a collection of data , by measuring angles and lengths of branches of some plants (15 in total), and i represented them with L-system fractals method as already told.
These images looks like the above ones:
Plant A
Plant B
Plant C
Till now i tried to find differences using two methods.
1) By calculating the fractal dimension of those images but as expected, it was 2 in all of them
2) By calculating the % of area coverage in a same canvas. Numbers in that case show some differences but there are not statistically significant.
So the thought was to use an other similarity index but there are too many protocols and ideas out there that i couldn't find a starting point. I read about OPENCV , VisualCI etc but because i've never used such methods again, i feel somehow lost.
Any of your suggestions will be welcome.
Thank you.

Related

How to provide a score value to an image based on pattern information in it?

I saw a few image processing and analysis related questions on this forum and thought I could try this forum for my question. I have a say 30 two-dimensional arrays (to make things simple, although I have a very big data set) which form 30 individual images. Many of these images have similar base structure, but differ in intensities for different pixels. Due to this intensity variation amongst pixels, some images have a prominent pattern (say a larger area with localised intense pixels or high intensity pixels classifying an edge). Some images, also just contain single high intensity pixels randomly distributed without any prominent feature (so basically noise). I am now trying to build an algorithm, which can give a specific score to an image based on different factors like area fraction of high intensity pixels, mean standard deviation, so that I can find out the image with the most prominent pattern (in order words rank them). But these factors depend on a common factor i.e. a user defined threshold, which becomes different for every image. Any inputs on how I can achieve this ranking or a image score in an automated manner (without the use of a threshold)? I initially used Matlab to perform all the processing and area fraction calculations, but now I am using R do the same thing.
Can some amount of machine learning/ random forest stuff help me here? I am not sure. Some inputs would be very valuable.
P.S. If this not the right forum to post, any suggestions on where I can get good advise?
First of all, let me suggest a change in terminology: What you denote as feature is usually called pattern in image prcessing, while what you call factor is usually called feature.
I think that the main weakness of the features you are using (mean, standard deviation) is that they are only based on the statistics of single pixels (1st order statistics) without considering correlations (neighborhood relations of pixels). If you take a highly stuctured image and shuffle the pixels randomly, you will still have the same 1st order statistics.
There are many ways to take these correlations into account. A simple, efficient and therefore popular method is to apply some filters on the image first (high-pass, low-pass etc.) and then get the 1st order statistics of the resulting image. Other methods are based on Fast Fourier Transform (FFT).
Of course machine learning is also an option here. You could try convolutional neural networks for example, but I would try the simple filtering stuff first.

Algorithms for finding a look alike face?

I'm doing a personal project of trying to find a person's look-alike given a database of photographs of other people all taken in a consistent manner - people looking directly into the camera, neutral expression and no tilt to the head (think passport photo).
I have a system for placing markers for 2d coordinates on the faces and I was wondering if there are any known approaches for finding a look alike of that face given this approach?
I found the following facial recognition algorithms:
http://www.face-rec.org/algorithms/
But none deal with the specific task of finding a look-alike.
Thanks for your time.
I believe you can also try searching for "Face Verification" rather than just "Face Recognition". This might give you more relevant results.
Strictly speaking, the 2 are actually different things in scientific literature but are sometimes lumped under face recognition. For details on their differences and some sample code, take a look here: http://www.idiap.ch/~marcel/labs/faceverif.php
However, for your purposes, what others such as Edvard and Ari has kindly suggested would work too. Basically they are suggesting a K-nearest neighbor style face recognition classifier.
As a start, you can probably try that. First, compute a feature vector for each of your face images in your database. One possible feature to use is the Local Binary Pattern (LBP). You can find the code by googling it. Do the same for your query image. Now, loop through all the feature vectors and compare them to that of your query image using euclidean distance and return the K nearest ones.
While the above method is easy to code, it will generally not be as robust as some of the more sophisticated ones because they generally fail badly when faces are not aligned (known as unconstrained pose. Search for "Labelled Faces in the Wild" to see the results for state of the art for this problem.) or taken under different environmental conditions. But if the faces in your database are aligned and taken under similar conditions as you mentioned, then it might just work. If they are not aligned, you can use the face key points, which you mentioned you are able to compute, to align the faces. In general, comparing faces which are not aligned is a very difficult problem in computer vision and is still a very active area of research. But, if you only consider faces that look alike and in the same pose to be similar (i.e. similar in pose as well as looks) then this shouldn't be a problem.
The website your gave have links to the code for Eigenfaces and Fisherfaces. These are essentially 2 methods for computing feature vectors for your face images. Faces are identified by doing a K nearest neighbor search for faces in the database with feature vectors (computed using PCA and LDA respectively) closest to that of the query image.
I should probably also mention that in the Fisherfaces method, you will need to have "labels" for the faces in your database to identify the faces. This is because Linear Discriminant Analysis (LDA), the classification method used in Fisherfaces, needs this information to compute a projection matrix that will project feature vectors for similar faces close together and dissimilar ones far apart. Comparison is then performed on these projected vectors. Here lies the difference between Face Recognition and Face Verification: for recognition, you need to have "labels" your training images in your database i.e. you need to identify them.
For verification, you are only trying to tell whether any 2 given faces are of the same person. Often, you don't need the "labelled" data in the traditional sense (although some methods might make use of auxiliary training data to help in the face verification).
The code for computing Eigenfaces and Fisherfaces are available in OpenCV in case you use it.
As a side note:
A feature vector is actually just a vector in your linear algebra sense. It is simply n numbers packed together. The word "feature" refers to something like a "statistic" i.e. a feature vector is a vector containing statistics that characterizes the object it represents. For e.g., for the task of face recognition, the simplest feature vector would be the intensity values of the grayscale image of the face. In that case, I just reshape the 2D array of numbers into a n rows by 1 column vector, each entry containing the value of one pixel. The pixel value here is the "feature", and the n x 1 vector of pixel values is the feature vector. In the LBP case, roughly speaking, it computes a histogram at small patches of pixels in the image and joins these histograms together into one histogram, which is then used as the feature vector. So the Local Binary Pattern is the statistic and the histograms joined together is the feature vector. Together they described the "texture" and facial patterns of your face.
Hope this helps.
These two would seem like the equivalent problem, but I do not work in the field. You essentially have the following two problems:
Face recognition: Take a face and try to match it to a person.
Find similar faces: Take a face and try to find similar faces.
Aren't these equivalent? In (1) you start with a picture that you want to match to the owner and you compare it to a database of reference pictures for each person you know. In (2) you pick a picture in your reference database and run (1) for that picture against the other pictures in the database.
Since the algorithms seem to give you a measure of how likely two pictures belong to the same person, in (2) you just sort the measures in decreasing order and pick the top hits.
I assume you should first analyze all the picture in your database with whatever approach you are using. You should then have a set of metrics for each picture which you can compare a specific picture with and statistically find the closest match.
For example, if you can measure the distance between the eyes, you can find faces that have the same distance. You can then find the face that has the overall closest match and return that.

Calculate how humans perceive similarity between different colours

I'm working on a site where users can describe a physical object using (amongst many other things) any color in the rgb 0-255 range. We offer some simplified palettes for easy clicking but a full color wheel is a requirement.
Behind the scenes, one of the processes compares two user descriptions of the object and scores them for similarity.
What I'm trying to do is get a score for how similar the 2 colors are in terms of human perception . Basically, the algorithm needs to determine if a 2 humans picking 2 different colors could be describing the same object. Thus Light Red->Red should be 100%, Most of the shades of grey will be 100% to each other, etc but red-> green is definitely not a match.
To get a decent look at how the algorithms were working, I plotted grayscale and 3 intensities of each hue against every other color in the set and indicated no match (0%) with black, visually identical (100%) with white and grayscale to indicate the intermediate values.
My first (very simplistic approach) was to simply treat the RGB values as co-ordinates in the colour cube and work out the distance (magnitude of the vector) between them.
This threw out a number of problems with regards to Black->50% Grey being a larger distance than (say) Black->50% Blue. having run hundreds of comparisons and asked for feedback, this doesn't seem to match human perception (shown below)
Method 2 converted the RGB values into HSV. I then generated a score based 80% on hue with the other 20% on Sat/Lum. This seems to be the best method so far but still throws some odd matches
Method 3 was an attempt at a hybrid - HSL Values were calculated but the final score was based upon the distance between the 2 colors in the HSL color cylinder space (as in 3D polar co-ordinates).
I feel like I must be re-inventing the wheel - surely this has been done before? I can't find any decent examples on Google and as you can see my approach leaves something to be desired.
So, my question is:
Is there a standard way to do this? If so, how? If not, can anyone suggest a way to improve my approach? I can provide code snippets if required but be warned it's currently messy as hell due to 3 days of tweaking.
Solution (Delta E 2000):
Using the suggestions provided below, I've implemented a Delta E 2000 comparer. I've had to tweak the weighting values to be quite large - I'm not looking for colors which are imperceptibly different but which are not hugely different. In case anyone's interested, the resulting plot is below...
There are a half dozen or so possibilities. EasyRGB has a page devoted to them. Of those listed, DeltaE 2000 probably has the best correlation with human perception -- and is also extremely complex to compute. Delta CMC is almost as good for something like half the code (though the computation still isn't entirely trivial).
I'm not 100% clear on how your problem is set up, but you may want to read up on: Normalized Cross Correlation, and Lab and CIEXYZ color spaces.
This sounds like a prime example for a neural net based approach (if you are in an experimenting mode :) because it's about creating a decision rule that mimics Human perception. A neural net that has six inputs (r, r', g, g', b, b') and one output (is_similar) can be easily trained by using e.g. your own perception of similarity as the training source!

Computer Science Theory: Image Similarity

So I'm trying to run a comparison of different images and was wondering if anyone could point me in the right direction for some basic metrics I can take for the group of images.
Assuming I have two images, A and B, I pretty much want as much data as possible about each so I can later programmatically compare them. Things like "general color", "general shape", etc. would be great.
If you can help me find specific properties and algorithms to compute them that would be great!
Thanks!
EDIT: The end goal here is to be able to have a computer tell me how "similar" too pictures are. If two images are the same but in one someone blurred out a face; they should register as fairly similar. If two pictures are completely different, the computer should be able to tell.
What you are talking about is way much general and non-specific.
Image information is formalised as Entropy.
What you seem to be looking for is basically feature extraction and then comparing these features. There are tons of features that can be extracted but a lot of them could be irrelevant depending on the differences in the pictures.
There are space domain and frequency domain descriptors of the image which each can be useful here. I can probably name more than 100 descriptors but in your case, only one could be sufficient or none could be useful.
Pre-processing is also important, perhaps you could turn your images to grey-scale and then compare them.
This field is so immensely diverse, so you need to be a bit more specific.
(Update)
What you are looking for is a topic of hundreds if not thousands of scientific articles. But well, perhaps a simplistic approach can work.
So assuming that the question here is not identifying objects and there is no transform, translation, scale or rotation involved and we are only dealing with the two images which are the same but one could have more noise added upon it:
1) Image domain (space domain): Compare the pixels one by one and add up the square of the differences. Normalise this value by the width*height - just divide by the number of pixels. This could be a useful measure of similarity.
2) Frequency domain: Convert the image to frequency domain image (using FTT in an image processing tool such as OpenCV) which will be 2D as well. Do the same above squared diff as above, but perhaps you want to limit the frequencies. Then normalise by the number of pixels. This fares better on noise and translation and on a small rotation but not on scale.
SURF is a good candidate algorithm for comparing images
Wikipedia Article
A practical example (in Mathematica), identifying corresponding points in two images of the moon (rotated, colorized and blurred) :
You can also calculate sum of differences between histogram bins of those two images. But it is also not a silver bullet...
I recommend taking a look at OpenCV. The package offers most (if not all) of the techniques mentioned above.

Near-Duplicate Image Detection [closed]

Closed. This question needs to be more focused. It is not currently accepting answers.
Want to improve this question? Update the question so it focuses on one problem only by editing this post.
Closed 5 years ago.
Improve this question
What's a fast way to sort a given set of images by their similarity to each other.
At the moment I have a system that does histogram analysis between two images, but this is a very expensive operation and seems too overkill.
Optimally I am looking for a algorithm that would give each image a score (for example a integer score, such as the RGB Average) and I can just sort by that score. Identical Scores or scores next to each other are possible duplicates.
0299393
0599483
0499994 <- possible dupe
0499999 <- possible dupe
1002039
4995994
6004994
RGB Average per image sucks, is there something similar?
There has been a lot of research on image searching and similarity measures. It's not an easy problem. In general, a single int won't be enough to determine if images are very similar. You'll have a high false-positive rate.
However, since there has been a lot of research done, you might take a look at some of it. For example, this paper (PDF) gives a compact image fingerprinting algorithm that is suitable for finding duplicate images quickly and without storing much data. It seems like this is the right approach if you want something robust.
If you're looking for something simpler, but definitely more ad-hoc, this SO question has a few decent ideas.
I would recommend considering moving away from just using an RGB histogram.
A better digest of your image can be obtained if you take a 2d Haar wavelet of the image (its a lot easier than it sounds, its just a lot of averaging and some square roots used to weight your coefficients) and just retain the k largest weighted coefficients in the wavelet as a sparse vector, normalize it, and save that to reduce its size. You should rescale R G and B using perceptual weights beforehand at least or I'd recommend switching to YIQ (or YCoCg, to avoid quantization noise) so you can sample chrominance information with reduced importance.
You can now use the dot product of two of these sparse normalized vectors as a measure of similarity. The image pairs with the largest dot products are going to be very similar in structure. This has the benefit of being slightly resistant to resizing, hue shifting and watermarking, and being really easy to implement and compact.
You can trade off storage and accuracy by increasing or decreasing k.
Sorting by a single numeric score is going to be intractable for this sort of classification problem. If you think about it it would require images to only be able to 'change' along one axis, but they don't. This is why you need a vector of features. In the Haar wavelet case its approximately where the sharpest discontinuities in the image occur. You can compute a distance between images pairwise, but since all you have is a distance metric a linear ordering has no way to express a 'triangle' of 3 images that are all equally distant. (i.e. think of an image that is all green, an image that is all red and an image that is all blue.)
That means that any real solution to your problem will need O(n^2) operations in the number of images you have. Whereas if it had been possible to linearize the measure, you could require just O(n log n), or O(n) if the measure was suitable for, say, a radix sort. That said, you don't need to spend O(n^2) since in practice you don't need to sift through the whole set, you just need to find the stuff thats nearer than some threshold. So by applying one of several techniques to partition your sparse vector space you can obtain much faster asymptotics for the 'finding me k of the images that are more similar than a given threshold' problem than naively comparing every image against every image, giving you what you likely need... if not precisely what you asked for.
In any event, I used this a few years ago to good effect personally when trying to minimize the number of different textures I was storing, but there has also been a lot of research noise in this space showing its efficacy (and in this case comparing it to a more sophisticated form of histogram classification):
http://www.cs.princeton.edu/cass/papers/spam_ceas07.pdf
If you need better accuracy in detection, the minHash and tf-idf algorithms can be used with the Haar wavelet (or the histogram) to deal with edits more robustly:
http://cmp.felk.cvut.cz/~chum/papers/chum_bmvc08.pdf
Finally, Stanford has an image search based on a more exotic variant of this kind of approach, based on doing more feature extraction from the wavelets to find rotated or scaled sections of images, etc, but that probably goes way beyond the amount of work you'd want to do.
http://wang14.ist.psu.edu/cgi-bin/zwang/regionsearch_show.cgi
I implemented a very reliable algorithm for this called Fast Multiresolution Image Querying. My (ancient, unmaintained) code for that is here.
What Fast Multiresolution Image Querying does is split the image into 3 pieces based on the YIQ colorspace (better for matching differences than RGB). Then the image is essentially compressed using a wavelet algorithm until only the most prominent features from each colorspace are available. These points are stored in a data structure. Query images go through the same process, and the prominent features in the query image are matched against those in the stored database. The more matches, the more likely the images are similar.
The algorithm is often used for "query by sketch" functionality. My software only allowed entering query images via URL, so there was no user interface. However, I found it worked exceptionally well for matching thumbnails to the large version of that image.
Much more impressive than my software is retrievr which lets you try out the FMIQ algorithm using Flickr images as the source. Very cool! Try it out via sketch or using a source image, and you can see how well it works.
A picture has many features, so unless you narrow yourself to one, like average brightness, you are dealing with an n-dimensional problem space.
If I asked you to assign a single integer to the cities of the world, so I could tell which ones are close, the results wouldn't be great. You might, for example, choose time zone as your single integer and get good results with certain cities. However, a city near the north pole and another city near the south pole can also be in the same time zone, even though they are at opposite ends of the planet. If I let you use two integers, you could get very good results with latitude and longitude. The problem is the same for image similarity.
All that said, there are algorithms that try to cluster similar images together, which is effectively what you're asking for. This is what happens when you do face detection with Picasa. Even before you identify any faces, it clusters similar ones together so that it's easy to go through a set of similar faces and give most of them the same name.
There is also a technique called Principle Component Analysis, which lets you reduce n-dimensional data down to any smaller number of dimensions. So a picture with n features could be reduced to one feature. However, this is still not the best approach for comparing images.
There's a C library ("libphash" - http://phash.org/) that will calculate a "perceptual hash" of an image and allow you to detect similar images by comparing hashes (so you don't have to compare each image directly against every other image) but unfortunately it didn't seem to be very accurate when I tried it.
You have to decide what is "similar." Contrast? Hue?
Is a picture "similar" to the same picture upside-down?
I bet you can find a lot of "close calls" by breaking images up into 4x4 pieces and getting an average color for each grid cell. You'd have sixteen scores per image. To judge similarity, you would just do a sum of squares of differences between images.
I don't think a single hash makes sense, unless it's against a single concept like hue, or brightness, or contrast.
Here's your idea:
0299393
0599483
0499994 <- possible dupe
0499999 <- possible dupe
1002039
4995994
6004994
First of all, I'm going to assume these are decimal numbers that are R*(2^16)+G*(2^8)+B, or something like that. Obviously that's no good because red is weighted inordinately.
Moving into HSV space would be better. You could spread the bits of HSV out into the hash, or you could just settle H or S or V individually, or you could have three hashes per image.
One more thing. If you do weight R, G, and B. Weight green highest, then red, then blue to match human visual sensitivity.
In the age of web services you could try http://tineye.com
The question Good way to identify similar images? seems to provide a solution for your question.
i assumed that other duplicate image search software performs an FFT on the images, and stores the values of the different frequencies as a vectors:
Image1 = (u1, u2, u3, ..., un)
Image2 = (v1, v2, v3, ..., vn)
and then you can compare two images for equalness by computing the distance between the weight vectors of two images:
distance = Sqrt(
(u1-v1)^2 +
(u2-v2)^2 +
(u2-v3)^2 +
...
(un-vn)^2);
One solution is to perform a RMS/RSS comparison on every pair of pictures required to perform a bubble sort. Second, you could perform an FFT on each image and do some axis averaging to retrieve a single integer for each image which you would use as an index to sort by. You may consider doing whatever comparison on a resized (25%, 10%) version of the original depending on how small a difference you choose to ignore and how much speedup you require. Let me know if these solutions are interesting, and we can discuss or I can provide sample code.
Most modern approaches to detect Near duplicate image detection use interesting points detection and descriptors describing area around such points. Often SIFT is used. Then you can quatize descriptors and use clusters as visual word vocabulary.
So if we see on ratio of common visual words of two images to all visual words of these images you estimate similarity between images. There are a lot of interesting articles. One of them is Near Duplicate Image Detection: minHash and tf-idf Weighting
For example using IMMI extension and IMMI you can examine many different ways how to measure similarity between images:
http://spl.utko.feec.vutbr.cz/en/component/content/article/46-image-processing-extension-for-rapidminer-5
By defining some threshold and selecting some method you can measure similarity.

Resources