I notice that HDFS delete commands will randomly fail. For example, in a MapReduce job I delete a directory at startup. Occasionally it fails with the error below, but will succeed on the second try.
org.apache.hadoop.ipc.RemoteException(java.lang.ArrayIndexOutOfBoundsException): java.lang.ArrayIndexOutOfBoundsException
at org.apache.hadoop.ipc.Client.call(Client.java:1364)
at org.apache.hadoop.ipc.Client.call(Client.java:1411)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:206)
at com.sun.proxy.$Proxy14.delete(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.delete(ClientNamenodeProtocolTranslatorPB.java:513)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy15.delete(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient.delete(DFSClient.java:1862)
at org.apache.hadoop.hdfs.DistributedFileSystem$11.doCall(DistributedFileSystem.java:599)
at org.apache.hadoop.hdfs.DistributedFileSystem$11.doCall(DistributedFileSystem.java:595)
at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
at org.apache.hadoop.hdfs.DistributedFileSystem.delete(DistributedFileSystem.java:595)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.RunJar.main(RunJar.java:212)
Digging into the datanode logs I see this exception:
RemoteException in offerService
org.apache.hadoop.ipc.RemoteException(java.lang.NullPointerException): java.lang.NullPointerException
at org.apache.hadoop.ipc.Client.call(Client.java:1411)
at org.apache.hadoop.ipc.Client.call(Client.java:1364)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:206)
at com.sun.proxy.$Proxy17.blockReport(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.DatanodeProtocolClientSideTranslatorPB.blockReport(DatanodeProtocolClientSideTranslatorPB.java:175)
at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.blockReport(BPServiceActor.java:493)
at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.offerService(BPServiceActor.java:716)
at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.run(BPServiceActor.java:851)
at java.lang.Thread.run(Thread.java:745)
I can't find any help on that, and I'm not sure where else to look. Does anyone know what that issue is?
I'm running Ubuntu 14.04.1 LTS and hadoop version prints out:
Hadoop 2.5.0-cdh5.3.1
Subversion http://github.com/cloudera/hadoop -r 4cda8416c73034b59cc8baafbe3666b074472846
Compiled by jenkins on 2015-01-28T00:41Z
Compiled with protoc 2.5.0
From source with checksum 6a018149a764de4b8992755df9a2a1b
This command was run using /opt/cloudera/parcels/CDH-5.3.1-1.cdh5.3.1.p0.5/jars/hadoop-common-2.5.0-cdh5.3.1.jar
Thanks for your help!
I haven't tried it yet, but Cloudera suggested upgrading to 5.3.3:
http://community.cloudera.com/t5/Storage-Random-Access-HDFS/HDFS-delete-command-results-in-ArrayIndexOutOfBoundsException/m-p/31817#U31817
Related
It's my first time using hadoop and try to run gridmix2 with it. I had installed hadoop 2.2.0 but when I try to generate data with gridmix i had the following error:
**
java.io.IOException: Cannot initialize Cluster. Please check your configuration for mapreduce.framework.name and the correspond server addresses.**
at org.apache.hadoop.mapreduce.Cluster.initialize(Cluster.java:120)
at org.apache.hadoop.mapreduce.Cluster.<init>(Cluster.java:82)
at org.apache.hadoop.mapreduce.Cluster.<init>(Cluster.java:75)
at org.apache.hadoop.mapred.JobClient.init(JobClient.java:470)
at org.apache.hadoop.mapred.JobClient.<init>(JobClient.java:460)
at org.apache.hadoop.examples.RandomTextWriter.run(RandomTextWriter.java:180)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
at org.apache.hadoop.examples.RandomTextWriter.main(RandomTextWriter.java:248)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.util.ProgramDriver$ProgramDescription.invoke(ProgramDriver.java:72)
at org.apache.hadoop.util.ProgramDriver.run(ProgramDriver.java:144)
at org.apache.hadoop.examples.ExampleDriver.main(ExampleDriver.java:74)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.util.RunJar.main(RunJar.java:212)
But in my file hadoop-env.sh i found that:
**
# Extra Java CLASSPATH elements. Automatically insert capacity-scheduler.
for f in $HADOOP_HOME/contrib/capacity-scheduler/*.jar; do
if [ "$HADOOP_CLASSPATH" ]; then
export HADOOP_CLASSPATH=$HADOOP_CLASSPATH:$f
else
export HADOOP_CLASSPATH=$f
fi
done
**
and the problem is that the contrib/capacity-scheduler doesn't exist in my system.
Thanks for your help!
I'm trying to pull data from Kafka to HDFS using Gobblin.
Gobblin version (compiled from github source code with command sudo ./gradlew clean build -PuseHadoop2 -PhadoopVersion=2.7.1 -x test):
0.6.2-546-g431188b
Hadoop version:
Hadoop 2.7.1.2.4.2.0-258
Subversion git#github.com:hortonworks/hadoop.git -r 13debf893a605e8a88df18a7d8d214f571e05289
Compiled by jenkins on 2016-04-24T16:02Z
Compiled with protoc 2.5.0
From source with checksum 2a2d95f05ec6c3ac547ed58cab713ac
This command was run using /usr/hdp/2.4.2.0-258/hadoop/hadoop-common-2.7.1.2.4.2.0-258.jar
Gobblin job:
job.name=GobblinKafkaQuickStart
job.group=GobblinKafka
job.description=Gobblin quick start job for Kafka
job.lock.enabled=false
job.schedule=0 0/2 * * * ?
kafka.brokers=hd-mgt03:6667,hd-mgt02:6667,hd-mgt04:6667
source.class=gobblin.source.extractor.extract.kafka.KafkaSimpleSource
extract.namespace=gobblin.extract.kafka
writer.builder.class=gobblin.writer.AvroHdfsDataWriter
writer.file.path.type=tablename
writer.destination.type=HDFS
writer.output.format=AVRO
data.publisher.type=gobblin.publisher.BaseDataPublisher
mr.job.max.mappers=1
metrics.reporting.file.enabled=true
metrics.log.dir=/gobblin-kafka/metrics
metrics.reporting.file.suffix=txt
bootstrap.with.offset=earliest
fs.uri=hdfs://hdfs:8020
writer.fs.uri=hdfs://hdfs:8020
state.store.fs.uri=hdfs://hdfs:8020
mr.job.root.dir=/kafka/working
state.store.dir=/kafka/state-store
task.data.root.dir=/kafka/task-data
data.publisher.final.dir=/kafka/job-output
I'm trying to run gobblin-mapreduce.sh from gobblin-dist/bin folder, but getting error:
Exception in thread "main" gobblin.runtime.JobException: Job job_GobblinKafkaQuickStart_1464962113982 failed
at gobblin.runtime.AbstractJobLauncher.launchJob(AbstractJobLauncher.java:363)
at gobblin.runtime.mapreduce.CliMRJobLauncher.launchJob(CliMRJobLauncher.java:84)
at gobblin.runtime.mapreduce.CliMRJobLauncher.run(CliMRJobLauncher.java:61)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84)
at gobblin.runtime.mapreduce.CliMRJobLauncher.main(CliMRJobLauncher.java:106)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
Log file contains error:
2016-06-03 16:55:17 MSK ERROR [main] gobblin.runtime.AbstractJobLauncher 321 - Failed to launch and run job job_GobblinKafkaQuickStart_1464962113982: java.lang.NoSuchFieldError: DEFAULT_MR_AM_ADMIN_USER_ENV
java.lang.NoSuchFieldError: DEFAULT_MR_AM_ADMIN_USER_ENV
at org.apache.hadoop.mapred.YARNRunner.createApplicationSubmissionContext(YARNRunner.java:470)
at org.apache.hadoop.mapred.YARNRunner.submitJob(YARNRunner.java:285)
at org.apache.hadoop.mapreduce.JobSubmitter.submitJobInternal(JobSubmitter.java:240)
at org.apache.hadoop.mapreduce.Job$10.run(Job.java:1290)
at org.apache.hadoop.mapreduce.Job$10.run(Job.java:1287)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
at org.apache.hadoop.mapreduce.Job.submit(Job.java:1287)
at gobblin.runtime.mapreduce.MRJobLauncher.runWorkUnits(MRJobLauncher.java:198)
at gobblin.runtime.AbstractJobLauncher.launchJob(AbstractJobLauncher.java:296)
at gobblin.runtime.mapreduce.CliMRJobLauncher.launchJob(CliMRJobLauncher.java:84)
at gobblin.runtime.mapreduce.CliMRJobLauncher.run(CliMRJobLauncher.java:61)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:84)
at gobblin.runtime.mapreduce.CliMRJobLauncher.main(CliMRJobLauncher.java:106)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.hadoop.util.RunJar.run(RunJar.java:221)
at org.apache.hadoop.util.RunJar.main(RunJar.java:136)
What could be the reason for this error? How can I fix it?
From you error I can tell it might be the problem of JAR.
Usually, this error (java.lang.NoSuchFieldError: DEFAULT_MR_AM_ADMIN_USER_ENV) is caused by jar conflicts. You can check your class path to see if there are any version conflicts.
I have a compiled jar for Hadoop including this library:
com.google.guava:guava:jar:15.0:compile
When I submit it into my Hadoop CDH5.0.1 cluster I have this error:
java.lang.NoSuchMethodError: com.google.common.base.Stopwatch.createStarted()Lcom/google/common/base/Stopwatch;
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.ProgramDriver$ProgramDescription.invoke(ProgramDriver.java:72)
at org.apache.hadoop.util.ProgramDriver.run(ProgramDriver.java:144)
at org.apache.hadoop.util.ProgramDriver.driver(ProgramDriver.java:152)
at com.trovit.pipeline.AdsPipelineDriver.main(AdsPipelineDriver.java:17)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.util.RunJar.main(RunJar.java:212)
The main thing is that Hadoop has an older version of guava into its classpath, loads it before mine and crashes because the used function doesn't exist.
I've tried configuration parameters such as mapreduce.task.classpath.user.precedence, mapreduce.task.classpath.first or mapreduce.job.user.classpath.first but none of them worked.
Any guess for solving this problem?
all. I run a hive query runs to 97% and exception shows that org.apache.hadoop.hdfs.server.namenode.LeaseExpiredException: No lease on sth.
Can anyone kindly explain the reason why this error occurred?
And this is a single user Hive cluster environment.
Thank you in advance.
2013-01-02 22:16:17,833 ERROR org.apache.hadoop.hdfs.DFSClient: Exception closing file /tmp/hive-hadoop/hive_2013-01-01_21-21-32_067_6367259756570557828/_task_tmp.-ext-10002/_tmp.000004_1 : org.apache.hadoop.ipc.RemoteException: org.apache.hadoop.hdfs.server.namenode.LeaseExpiredException: No lease on /tmp/hive-hadoop/hive_2013-01-01_21-21-32_067_6367259756570557828/_task_tmp.-ext-10002/_tmp.000004_1 File does not exist. Holder DFSClient_attempt_201301012114_0002_m_000004_1 does not have any open files.
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:1631)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:1622)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFileInternal(FSNamesystem.java:1677)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFile(FSNamesystem.java:1665)
at org.apache.hadoop.hdfs.server.namenode.NameNode.complete(NameNode.java:718)
at sun.reflect.GeneratedMethodAccessor13.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1388)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1384)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1382)
org.apache.hadoop.ipc.RemoteException: org.apache.hadoop.hdfs.server.namenode.LeaseExpiredException: No lease on /tmp/hive-hadoop/hive_2013-01-01_21-21-32_067_6367259756570557828/_task_tmp.-ext-10002/_tmp.000004_1 File does not exist. Holder DFSClient_attempt_201301012114_0002_m_000004_1 does not have any open files.
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:1631)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.checkLease(FSNamesystem.java:1622)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFileInternal(FSNamesystem.java:1677)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.completeFile(FSNamesystem.java:1665)
at org.apache.hadoop.hdfs.server.namenode.NameNode.complete(NameNode.java:718)
at sun.reflect.GeneratedMethodAccessor13.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:563)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1388)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:1384)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:1382)
at org.apache.hadoop.ipc.Client.call(Client.java:1070)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:225)
at $Proxy2.complete(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:601)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:82)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:59)
at $Proxy2.complete(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.closeInternal(DFSClient.java:3897)
at org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.close(DFSClient.java:3812)
at org.apache.hadoop.hdfs.DFSClient$LeaseChecker.close(DFSClient.java:1345)
at org.apache.hadoop.hdfs.DFSClient.close(DFSClient.java:275)
at org.apache.hadoop.hdfs.DistributedFileSystem.close(DistributedFileSystem.java:328)
at org.apache.hadoop.fs.FileSystem$Cache.closeAll(FileSystem.java:1446)
at org.apache.hadoop.fs.FileSystem.closeAll(FileSystem.java:277)
at org.apache.hadoop.fs.FileSystem$ClientFinalizer.run(FileSystem.java:260)
Does your hive query create parallel MR jobs ?
I had the same problem, and found that: LeaseExpiredException: No lease error on HDFS :
When the job ends he deletes /data/work/ folder. If few jobs are running in parallel the deletion will also delete the files of the another job. actually I need to delete /data/work/.
In other words this exception is thrown when the job try to access to files which are not existed anymore
SET hive.exec.max.dynamic.partitions=100000;
SET hive.exec.max.dynamic.partitions.pernode=100000;
I am getting a NullPointerException when trying to start my hadoop job with access to Cassandra. Here comes the stack trace:
Exception in thread "main" java.lang.NullPointerException
at org.apache.cassandra.utils.FBUtilities.newPartitioner(FBUtilities.java:415)
at org.apache.cassandra.hadoop.ConfigHelper.getOutputPartitioner(ConfigHelper.java:416)
at org.apache.cassandra.hadoop.ColumnFamilyOutputFormat.checkOutputSpecs(ColumnFamilyOutputFormat.java:90)
at org.apache.cassandra.hadoop.ColumnFamilyOutputFormat.checkOutputSpecs(ColumnFamilyOutputFormat.java:81)
at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:887)
at org.apache.hadoop.mapred.JobClient$2.run(JobClient.java:850)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:416)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1121)
at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:850)
at org.apache.hadoop.mapreduce.Job.submit(Job.java:500)
at org.apache.hadoop.mapreduce.Job.waitForCompletion(Job.java:530)
at RowKeyIndexer.run(RowKeyIndexer.java:393)
at Indexer.run(Indexer.java:56)
at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:65)
at Indexer.main(Indexer.java:30)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.apache.hadoop.util.RunJar.main(RunJar.java:156)
I am running hadoop version 1.0.3 and cassandra version 1.1.2.
Any help is highly appreciated as I have no idea where to start.
Thanks alot!
It looks like you haven't set your output parititioner, like this:
ConfigHelper.setOutputPartitioner(conf, "org.apache.cassandra.dht.RandomPartitioner");