I am trying my hands on the Stanford dependency parser. I tried running the parser from command line on windows to extract the dependencies using this command:
java -mx100m -cp "stanford-parser.jar" edu.stanford.nlp.trees.EnglishGrammaticalStructure -sentFile english-onesent.txt -collapsedTree -CCprocessed -parserFile englishPCFG.ser.gz
I am getting the following error:
Error occurred during initialization of VM
Too small initial heap
I changed the memory size to -mx1024, -mx2048 as well as -mx4096. It didn't change anything and the error persists.
What am I missing?
Type -Xmx1024m instead of -mx1024.
See https://docs.oracle.com/javase/8/docs/technotes/tools/windows/java.html
It should be -mx1024m. I skipped m.
One more thing: in the -cp, the model jar should also be included.
... -cp "stanford-parser.jar;stanford-parser-3.5.2-models.jar"...
(assuming you are using the latest version).
Otherwise an IO Exception will be thrown.
There may be some arguments that are preexisting in the IDE.
In eclipse:
Go to-> Run as-> run configuration-> Arguments
then Delete the arguments that are used previously.
Restart your eclipse.
Worked for me!
Related
When I am running application on simulator or device and try to use PO command during debug. Xcode is throwing error instead of printing value. It is happening after I have updated Xcode 12.
error: virtual filesystem overlay file
/all-product-headers.yaml' not found
error: couldn't IRGen expression. Please check the above error messages for possible root causes.
What is the solution for this ?
Any help would be appreciated.
Go to /Users/<YOUR_USER>/Library/Developer/Xcode/ and delete "DerivedData" folder.
If in the path of the missing file is the name of a framework e.g. Usabilla.build/Release-iphonesimulator/Usabilla.build/all-product-headers.yaml
Try using an older version, using version 6.4.7 of Usabilla fixed the issue for me.
If the above fixes don't work, here are some info that might help:
https://steipete.com/posts/couldnt-irgen-expression/
I have build a very simple project of hello world in
Payara 5 (5.181)
JSF 2.3
JDK 1.8
CDI 2.0
Maven
and encountered a problem
Unable to start server due following issues: Launch process failed with exit code 1
in console it throws an error of :
Error: Could not find or load main class server\payara5\glassfish.lib.grizzly-npn-bootstrap.jar
[PIC] Payara 5 Error
It seems that the Payara Tools for Eclipse suffer by several bugs that may cause this. In my case, the following workarounds helped:
The Payara installation path should not contain spaces (e.g. Program Files\Payara)
It seems that only Java 8 is supported at the time
Open the domain.xml configuration file for the domain you are trying to start (typically payara_install_path/glassfish/domains/domain1/config/domain1.xml) and search for "Xbootclasspath". You should find a couple of lines like
<jvm-options>[1.8.0|1.8.0u120]-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.6.jar</jvm-options>
<jvm-options>[1.8.0u121|1.8.0u160]-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.7.jar</jvm-options>
<jvm-options>[1.8.0u161|1.8.0u190]-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.8.jar</jvm-options>
<jvm-options>[1.8.0u191|1.8.0u500]-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.8.1.jar</jvm-options>
Depending of your installed Java version (try running java --version) and choose the appropriate line (most likely the last one). Remove the remaining lines and remove the [...] part at the beginning of the chosen line so you will get something like
<jvm-options>-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.8.1.jar</jvm-options>
After this, the tools seem to start normally.
The Problem is with Java version. The grizzly-npn-bootstrap-1.8.1.jar Jar is placed in bootclasspath, thats why it requires proper java version to start payara server. So remove unnecessary bootstrap jar from domain.xml.
In Windows:
1) Go To ---C:\Users\xxxx\payara5\glassfish\domains\domain1\config\domain.xml
2) According to my java verson(java version "1.8.0_191") I deleted the following lines from domain.xml. So delete according to your java version.
<jvm-options>[1.8.0|1.8.0u120]-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.6.jar</jvm-options>
<jvm-options>[1.8.0u121|1.8.0u160]-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.7.jar</jvm-options>
<jvm-options>[1.8.0u161|1.8.0u190]-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.8.jar</jvm-options>
3) Remove this [1.8.0u191|1.8.0u500] part from jvm-options & Edit the line in your domain.xml(w.r.t java -version) as shown below
<jvm-options>-Xbootclasspath/p:${com.sun.aas.installRoot}/lib/grizzly-npn-bootstrap-1.8.1.jar</jvm-options>
4) restart your server.
As Radkovo said, "The Payara installation path should not contain spaces (e.g. Program Files\Payara)", so I moved the Payara to the Documents folder.
Problem solved!
I cant use sparkR in Rstudio because im getting some error: Error in sparkR.sparkContext(master, appName, sparkHome, sparkConfigMap, :
JVM is not ready after 10 seconds
I have tried to search for the solution but cant find one. Here is how I have tried to setup sparkR:
Sys.setenv(SPARK_HOME="C/Users/alibaba555/Downloads/spark") # The path to your spark installation
.libPaths(c(file.path(Sys.getenv("SPARK_HOME"), "R", "lib"), .libPaths()))
library("SparkR", lib.loc="C/Users/alibaba555/Downloads/spark/R") # The path to the lib folder in the spark location
library(SparkR)
sparkR.session(master="local[*]",sparkConfig=list(spark.driver.memory="2g")*
Now execution starst with a message:
Launching java with spark-submit command
C/Users/alibaba555/Downloads/spark/bin/spark-submit2.cmd
sparkr-shell
C:\Users\ALIBAB~1\AppData\Local\Temp\Rtmp00FFkx\backend_port1b90491e4622
And finally after a few minutes it returns an error message:
Error in sparkR.sparkContext(master, appName, sparkHome,
sparkConfigMap, : JVM is not ready after 10 seconds
Thanks!
It looks like the path to your spark library is wrong. It should be something like: library("SparkR", lib.loc="C/Users/alibaba555/Downloads/spark/R/lib")
I'm not sure if that will fix your problem, but it could help. Also, what versions of Spark/SparkR and Scala are you using? Did you build from source?
What seemed to be causing my issues boiled down to the working directory of our users being a networked mapped drive.
Changing the working directory fixed the issue.
If by chance you are also using databricks-connect make sure that the .databricks-connect file is copied into the %HOME% of each user who will be running Rstudio or set up databricks-connect for each of them.
I need to build RXTX (http://rxtx.qbang.org/wiki/index.php/Main_Page) for a 64 bit platform with --disable-locks. ( the target platform is a Ubuntu Snappy platform so there is a problem with the permissions and lock files).
The .configure --disable-locks and make seemed to run ok.
I got a new .jar file and librxtxSerial.so as a result.
However when I installed them, I get the following error :
java.lang.UnsatisfiedLinkError: gnu.io.RXTXCommDriver.nativeGetVersion()Ljava/lang/String; thrown while loading gnu.io.RXTXCommDriver
java.lang.NoClassDefFoundError: Could not initialize class gnu.io.RXTXCommDriver thrown while loading gnu.io.RXTXCommDriver
Is there something else I need to do?
Are there other object files I need to copy over.
Thanks in advance.
I solved the problem myself.
The problem was that the configure script was not expecting a java version higher than 1.5 as shown here in t he extract :
case $JAVA_VERSION in
1.2*|1.3*|1.4*|1.5*)
#fix_parameters $JPATH/jre/lib/javax.comm.properties
CLASSPATH=".:\$(TOP):\$(TOP)/src:"find $JPATH/ -name RXTXcomm.jar |head -n1
RXTX_PATH="\$(JPATH)/jre/lib/\$(OS_ARCH)"
JHOME=$JPATH/"jre/lib/ext"
So the paths were not being set up correctly for me.
I changed it to
case $JAVA_VERSION in
1.2*|1.3*|1.4*|1.5*|1.7*)
Then it worked ok.
I am deploying a large Java project on Sonar using "Findbugs" as profile and getting the error below:
Caused by: java.util.concurrent.ExecutionException: java.lang.OutOfMemoryError:
Java heap space
What i have tried to resolve this:
Replaced %SONAR_RUNNER_OPTS% with -Xms256m -Xmx1024m to increase the heap size in sonar-runner bat file.
Put "sonar.findbugs.effort" parameter as "Min" in Sonar global parameters.
But both of above methods didn't work for me.
I had the same problem and found a very different solution, perhaps because I'm having a hard time swallowing the previous answers / comments. With 10 million lines of code (that's more code than is in an F16 fighter jet), if you have a 100 characters per line (a crazy size), you could load the whole code base into 1GB of memory. I set it 8GB of memory and it still failed. Why?
Answer: Because the community Sonar C++ scanner seems to have a bug where it picks up ANY file with the letter 'c' in its extension. That includes .doc, .docx, .ipch, etc. Hence, the reason it's running out of memory is because it's trying to read some file that it thinks is 300mb of pure code but really it should be ignored.
Solution: Find the extensions used by all of the files in your project (see more here):
dir /s /b | perl -ne 'print $1 if m/\.([^^.\\\\]+)$/' | sort -u | grep c
Then add these other extensions as exclusions in your sonar.properties file:
sonar.exclusions=**/*.doc,**/*.docx,**/*.ipch
Then set your memory limits back to regular amounts.
%JAVA_EXEC% -Xmx1024m -XX:MaxPermSize=512m -XX:ReservedCodeCacheSize=128m %SONAR_RUNNER_OPTS% ...
this has worked for me:
SONAR_RUNNER_OPTS="-Xmx3062m -XX:MaxPermSize=512m -XX:ReservedCodeCacheSize=128m"
I set it direct in the sonar-runner(.bat) file
I had the same problem when running sonar with maven. In my case it helped to call sonar separately:
mvn clean install && mvn sonar:sonar
instead of
mvn clean install sonar:sonar
http://docs.sonarqube.org/display/SONAR/Analyzing+with+Maven
Remark: Because my solution is connected to maven, this is not the direct answer for the question. But it might help other users who stumple upon it.
What you can do it to create your own quality profile with just some Findbugs rules at first, and then progressively add more and more until you reach his OutOfMemoryError. There's probably only a single rule that makes all this fail because your code violates it - and if you deactivate this rule, it will certainly work.
I know this thread is a bit old but this info might help someone.
For me the problem was not like suggested by the top-answer with the C++ plugin.
Instead my problem was the Xml-Plugin (https://docs.sonarqube.org/display/PLUG/SonarXML)
after I deactivated it the analysis worked again.
You can solve this issue by increase the maximum memory allocated to the appropriate process by increasing the -Xmx memory setting for the corresponding Java process in your sonar.properties file
under SonarQube/conf/sonar.properties
uncomment below lines and increase the memory as you want:
For Web: Xmx5123m -Xms1536m -XX:+HeapDumpOnOutOfMemoryError
For ElasticSearch: Xms512m -Xmx1536m -XX:+HeapDumpOnOutOfMemoryError
For Compute Engine: sonar.ce.javaOpts=-Xmx1536m -Xms128m -XX:+HeapDumpOnOutOfMemoryError
The problem is on FindBugs side. I suppose you're analyzing a large project that probably has many violations. Take a look at two threads in Sonar's mailing list having the same issue. There are some ideas you can try for yourself.
http://sonar.15.n6.nabble.com/java-lang-OutOfMemoryError-Java-heap-space-td4898141.html
http://sonar.15.n6.nabble.com/java-lang-OutOfMemoryError-Java-heap-space-td5001587.html
I know this is old, but I am just posting my answer anyway. I realized I was using the 32bit JDK (version 8) and after uninstalling it and then installing 64bit JDK (version 12) the problem disappeared.