Error copying directories at command line using cp - bash

Mac OS X Yosemite v.10.10.5.
I am trying to use the cp command to copy one Git directory to another.
This command-line statement:
cp -r /path/to/dir/from/ /path/to/dir/to/
Returns this error:
cp: /path/to/dir/to/.git/objects/00/00ad2afeb304e18870d4509efc89fedcb3f128: Permission denied
This error is returned one time each for (what I believe, but haven't verified, is) every file in the directory.
The first time I ran the command it worked properly, as expected, without error. But, without making any changes to any files, the second (and subsequent) times I ran the command, I got the error.
What's going on? And how can I fix this?
Edit:
In response to a question in the comment:
What does ls -l /path/to/dir/to/.git/objects/00/00ad2afeb304e18870d4509efc89fedcb3f128 show?
The answer is it shows:
-r--r--r-- 1 myusername staff 6151 May 6 00:45 /path/to/dir/to/.git/objects/00/00ad2afeb304e18870d4509efc89fedcb3f128

The reason you are getting Permission Denied is because you are trying to overwrite a file that already exists in the destination directory that has read only permissions set on it. Since it appears you're trying to overwrite it you could just remove the destination directory if it exists before the copy operation. Also you should use -R, not -r ...
Historic versions of the cp utility had a -r option. This
implementation
supports that option; however, its use is strongly discouraged, as it
does not correctly copy special files, symbolic links, or fifo's.
Using a command such as this should resolve your issue:
[[ ! -d dest ]] || rm -rf dest ; cp -R src dest
The above checks if dest exists; if it does recursively remove it, then copy the source to dest,

You may want cp -rp for this operation. -p preserves the user and group IDs associated with the file. Try starting over using -p and see if that solves the issue.
Anther reason you might be seeing this issue is if the permission really is denied. That is, if you're trying to copy into a folder owned by another user without superuser privileges.

Related

Answer no to all questions using the yes command

I'm trying to remove all files except read-only ones, but this command removes all of them anyway:
yes n | rm *
Did I do something wrong? If not, why doesn't it work?
For rm to automatically enable -i mode that prompts the user to delete unwritable files, the standard input has to be a terminal (as specified in the man pages).
So, for the command to work correctly the user has to specify the -i option manually:
yes n | rm -i *
After doing so the command works as expected.
In Posix systems, the read-only state of a file does not prevent it from being removed by rm.
You haven't said what your shell is, but perhaps you have an alias to rm that does ask you for confirmation when the file is read-only, and that alias behaves differently when it stdin is part of a pipe.
The problem is you only need write permissions to the folder, not to the files, to remove them:
(From here)
Any attempt to access a file's data requires read permission. Any attempt to modify a file's data requires write permission. Any attempt to execute a file (a program or a script) requires execute permission.
In *nix systems directories are also files and thus use the same permission system as for regular files. Note permissions assigned to a directory are not inherited by the files within that directory.
Because directories are not used in the same way as regular files, the permissions work slightly (but only slightly) differently. An attempt to list the files in a directory requires read permission for the directory, but not on the files within. An attempt to add a file to a directory, delete a file from a directory, or to rename a file, all require write permission for the directory, but (perhaps surprisingly) not for the files within. Execute permission doesn't apply to directories (a directory can't also be a program). But that permission bit is reused for directories for other purposes.
To find files with specific permissions you can use
find -perm <mode>
read more
To remove files found by find you can use
find . -perm 444 -exec /bin/rm {} \;
(mybe slightly different, it depends on files you search and system you have)
more exec examples

rm -r -f doesn't delete inner folder

I have large projects and some scripts to compile them. I can't add all code here, so I'll try to simplify the problem: in the cleaning part, I need to clean folder named directory which contains other directory named innerDir. I have this bash command for cleaning directory:
clean:
rm -r -f directory
When directory is a folder that I created with mkdir -p beforehand. When I clean, I get this error:
rm: cannot remove 'directory': Directory not empty
But when I try to enter directory , I see that it's empty. So for debugging, I modified my cleanning part to be:
rm -r -f directory/*
find directory
rmdir directory
(it's suppose to do the same, but here I also get the chance to see if all the content of directory was really deleted).
Now I get this error:
find: 'directory/innerDir': Permission denied
There are two things that unclear for me here:
(1). innerDir was created with makedir -p before the clening part, without any change to the permissions of it later in the code. Why don't I have permission to delete it?
(2). If I try to clean again- the cleaning succeed and I don't have any permission problem. So, if I got permission error in the first time I tried to delete it, why don't I get it in the second time?
If your permissions are valid down the directory tree, rm -fr directory ought to work.
If you don't have read access on innerDir, then is it possible/likely (depending on running processes, perhaps) that something has written to innerDir, but the file gets cleaned up after so that the directory becomes free?
Can you give examples of permissions, ownership, and some scope of the operations happening between each step?
Could you rename the parent folder while working, and/or lock it's permissions to prevent other users or processes from altering things?

Bash: duplicate + rename folder

Suppose I have a folder named my_folder_old in /path/to/folder, how can I create a duplicate named my_folder_new in the same directory?
EDIT
Moreover if my_folder_new already exists, my_folder_old is created inside the first and not substituted. Why is this happening?
Tutorial copy files, folder link: link
Manual cp command : Link
cp -frp /path/to/folder/my_folder_old -T /path/to/folder/my_folder_new
-f, --force
if an existing destination file cannot be opened, remove it
and try again (this option is ignored when the -n option is
also used)
-p same as --preserve=mode,ownership,timestamps
-R, -r, --recursive
copy directories recursively
-T, --no-target-directory
treat DEST as a normal file
Though if my_folder_new already exists, my_folder_old is created inside the first and not substituted. Why is this happening?
The reason why is this happening because, my_folder_new already created. Doing same cp command it will see as new path, /path/to/folder/my_folder_new/
I was dealing with this same issue, was going crazy ahaha, I tried cp -frp but did not work, so, before of going to do cp just remove the existing folder using rm, see below more info about this:
Remove Directory Linux
If a directory or a file within the directory is write-protected, you will be prompted to confirm the deletion. To remove a directory without being prompted, use the -f option:
rm -rf dir1

Shell script CP cannot overwrite directory

our users have written a shell script to copy an application into into the /Applications folder on OSX. it works great the first time, but the second time they get an error. This is a new development, it apparently used to work fine before we changed the App name.
The shell script runs the following:
cp -a ApplicationName.app /Applications
open -a '/Applications/ApplicationName.app/Contents/MacOS/ApplicationName' --args -LSRC autolaunch
The first time it runs, it works fine, the application is copied over and then it launches. the second time it comes back with the following errors
[jrivera#chamomile] $ sudo ./InstallScript.sh /SRNM ABC1234567
cp: cannot overwrite directory /Applications/ApplicationName.app/Contents/Frameworks/Sparkle.framework/Headers with non-directory ApplicationName.app/Contents/Frameworks/Sparkle.framework/Headers
cp: cannot overwrite directory /Applications/ApplicationName.app/Contents/Frameworks/Sparkle.framework/Resources with non-directory ApplicationName.app/Contents/Frameworks/Sparkle.framework/Resources
cp: cannot overwrite directory /Applications/ApplicationName.app/Contents/Frameworks/Sparkle.framework/Versions/A/Resources/fr_CA.lproj with non-directory ApplicationName.app/Contents/Frameworks/Sparkle.framework/Versions/A/Resources/fr_CA.lproj
cp: cannot overwrite directory /Applications/ApplicationName.app/Contents/Frameworks/Sparkle.framework/Versions/A/Resources/pt.lproj with non-directory ApplicationName.app/Contents/Frameworks/Sparkle.framework/Versions/A/Resources/pt.lproj
cp: cannot overwrite directory /Applications/ApplicationName.app/Contents/Frameworks/Sparkle.framework/Versions/Current with non-directory ApplicationName.app/Contents/Frameworks/Sparkle.framework/Versions/Current
I'm not exactly sure why that's happening. it's the exact same script in the exact same location copying the exact same things 30 seconds apart. I dug into each and the directories and files all appear the exact same file type. I tried adding other commands to the cp to force it (-RfXv) but got the same thing. Any ideas? maybe it's a strange thing with sparkle?
I would suspect that the problematic files/directories have some extended attributes, and that cp is having problems overwriting the target when it has those attributes. (cp when preserving permissions often seems unreliable on different platforms).
Given that, there are a couple of workarounds to explore:
remove the target /Applications/ApplicationName.app before re-copying it.
use rsync, e.g.,
rsync -vaz ApplicationName.app/ /Applications/ApplicationName.app
Removing the target first may interfere with people using it while you are updating it; rsync works incrementally (and almost always updates more rapidly than cp).

Why am i getting "Directory not empty" error in terminal when using rmdir?

I am a walking through a tutorial and it lets me delete two directories(im using one 10 deep, all empty) but once i try to remove the third it gives me that error message, even though there is not content in the directory and i am in the directory above it. Why is this? By the way i am using terminal.
That error is reported when the directory is not empty.
To find out what files are in that directory use ls -a. The -a flag tells ls to list hidden files (aka "dot files"). Remove those files then rmdir can be used.
Another option is to simply use rm -rf to recursively delete the directory and all of its files. NOTE: this can be dangerous if you give the wrong parameters - resulting in deleting more than you intended.
you can remove all hidden files by using rm -R ./.* you have to be in the directory the hidden file is in for it to work
On Windows I recently has the same problem, and deleting everything in {UserFolder}\AppData\Local\Composer\files didn't helped.
What I've done is to launch multiple times the composer install --dry-run command until it listed all dependencies, then I successfully ran the composer install command.

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