How to resume failed execution in MapReduce? - hadoop

I have one requirement saying that -
a. Lets say i have 100GB of file/data
b. I have written Map Reduce job to process this data on certain logic.
c. I fired Map Reduce job, but it failed after reading 50GB
So my question is -
Can i resume the Map Reduce job from the 51th GB?
Please let me know if anybody have idea on how to do it, i don't want to reprocess the data which i processed before point of failure.
Thanks in advance

Brief answer: no.
And that's why working with large batch processing systems such as Hadoop or MPI is hard. Not only restarts of large jobs are inefficient from resource consumption point of view, but are also very psychologically depressive. That's why your primary goal is to reduce running time of single job to no more than couple of hours. Maybe it would be possible some day to implement "pausing" of jobs and "hot fixing" code, but currently it is not supported to my knowledge.
Solution #1. Split your job into error-prone parallelizable job and final error-free non-parallelizable job. Consider following example: you have hundreds of gigabytes of textual access logs from web server and you want to write job that will print how popular different browsers are. If you combine parsing and aggregating (summing) to a single huge job, then it's running time will be of order of days, and also chances that it will fail are very high because textual logs are usually hard to parse due to disambiguity. Much better idea is to split this job into two separate jobs:
First job is solely responsible for parsing log files. It prints only browser string as its output and even doesn't need to have any reducers. This job is the place for 99% of all errors because here is where parsing of "wild" data occurs. This job is parallelizable in the sense that you may split your input into chunks and process each chunk separately, so that each chunk is processed in 10-30 minutes. If job fails for some chunk, you fix it and restart; 30 minutes is not a big loss.
Second job is grand job that takes outputs from instances of first jobs and performs aggregation. Because aggregation code is very simple, this job is not likely to fail.
chunk(20G)->parse-job(20G)->browsers(0.5G)
chunk(20G)->parse-job(20G)->browsers(0.5G)
input(1T)->chunk(20G)->parse-job(20G)->browsers(0.5G)->aggregate-job->output
... .... ...
chunk(20G)->parse-job(20G)->browsers(0.5G)
Solution #2. Sometimes you may be satisfied with result even if parts of input data are dropped out. In this case you may set options mapred.max.map.failures.percent and/or mapred.max.reduce.failures.percent to non-zero values.

If your entire job fails, the output gets cleared, so you loose whatever you processed. However, Hadoop retries failed tasks of a job. So as long as your failure is recoverable within preconfigured number of attempts, a job will not fail and you are not going to loose output from already completed tasks.
If your failure is not recoverable, then in most cases it is your fault, and you might need to do one or more of the following:
Fix your code, even simple bug may cause all your tasks to consistently fail
Use less resources (e.g. care of available memory)
Better partition the problem (see if some tasks are fed more data than others or make sure task input is getting split into smaller chunks)
Have a bigger cluster capacity.

Related

How long does it take to process the file If I have only one worker node?

Let's say I have a data with 25 blocks and the replication factor is 1. The mapper requires about 5 mins to read and process a single block of the data. Then how can I calculate the time for one worker node? The what about 15 nodes? Will the time be changed if we change the replication factor to 3?
I really need a help.
First of all I would advice reading some scientific papers regarding the issue (Google Scholar is a good starting point).
Now a bit of discussion. From my latest experiments I have concluded that processing time has very strong relation with amount of data you want to process (makes sense). On our cluster, on average it takes around 7-8 seconds for Mapper to read a block of 128MBytes. Now there are several factors which you need to consider in order to predict the overall execution time:
How much data the Mapper produces, which will determine moreless the time Hadoop requires to execute Shuffling
What Reducer is doing? Does it do some iterative processing? (might be slow!)
What is the configuration of the resources? (how many Mappers and Reducers are allowed to run on the same machine)
Finally are there other jobs running simultaneously? (this might be slowing down the jobs significantly, since your Reducer slots can be occupied waiting for data instead of doing useful things).
So already for one machine you are seeing the complexity of the task of predicting the time of job execution. Basically during my study I was able to conclude that in average one machine is capable of processing from 20-50 MBytes/second (the rate is calculated according to the following formula: total input size/total job running time). The processing rate includes the staging time (when your application is starting and uploading required files to the cluster for example). The processing rate is different for different use cases and greatly influenced by the input size and more importantly the amount of data produced by Mappers (once again this values are for our infrastructure and on different machine configuration you will be seeing completely different execution times).
When you start scaling your experiments, you would see in average improved performance, but once again from my study I could conclude that it is not linear and you would need to fit by yourself, for your own infrastructure the model with respective variables which would approximate the job execution time.
Just to give you an idea, I will share some part of the results. The rate when executing determine use case on 1 node was ~46MBytes/second, for 2 nodes it was ~73MBytes/second and for 3 nodes it was ~85MBytes/second (in my case the replication factor was equal to the number of nodes).
The problem is complex requires time, patience and some analytical skills to solve it. Have fun!

Tez. Slow reducers

I have strange behavior with TEZ mapreduce job.
I'm trying to read logs data from Hive, split it into some chunks by id, date and some other parameters and then write to another hive tables.
Map phase works fast enough and takes about 20 minutes, than reducers start to work and 453 from 458 reducers process all data within next 20 minutes. But last 5 reducers work for about 1 hour.
It happens because my input data includes some huge entries and processing these entries takes a lot of time.
What is the best practice for such cases? Should I make some hadoop/tez/hive tuning to allow kind of parallel processing for last reducers or it would be smarter to split input data by other parameters to avoid huge entries?
Thanks for any advice.
The magic word behind that not-so-strange behavior is skew. And it's a veeeery common issue. Usually people prefer ignoring the problem... until they really feel the pain (just like you do now).
With TEZ, since HIVE-7158 Use Tez auto-parallelism in Hive you can try to tinker with some specific properties:
hive.tez.auto.reducer.parallelism
hive.tez.max.partition.factor
hive.tez.min.partition.factor
But that "auto-parallelism" feature seems to apply when you have several abnormally small reduce datasets that can be merged, while your problem is the exact opposite (one abnormally large reduce dataset). So you should try also to tinker with
hive.exec.reducers.bytes.per.reducer
hive.exec.reducers.max
...to change the scale and make "large" the new "normal" (hence "normal" becoming "small"). But then, maybe all you will get will be 3 reducers all taking 1 hour to complete. Hard to say.
Good luck. This kind of performance tuning is more Art than Science.
Reference :
https://cwiki.apache.org/confluence/display/Hive/Configuration+Properties#ConfigurationProperties-hive.tez.auto.reducer.parallelism
https://www.mail-archive.com/user#tez.apache.org/msg00641.html
http://fr.slideshare.net/t3rmin4t0r/hivetez-a-performance-deep-dive/25
http://fr.slideshare.net/hortonworks/discoverhdp22faster-sql-queries-with-hive/28
~~~~~~
PS: of course, if you could remove the source of skewness by changing the way you organize your input dataset...

Is the number of map tasks determined by the number of nodes in hadoop in case the input is small in size or is part of the hardware idle?

I have a basic mapreduce question.
My input consists of many small files and I have designed a custom CombinedFileInputFormat (which is working properly).
The size of all files together is only like 100 Mb for 20 000 files, but processing an individual file takes a couple of minutes (it's a heavy indexing problem), therefore I want as many map tasks as possible. Will hadoop take care of this or do I have to enforce it and how? In the latter case my first guess would be to manipulate the maximum split size but I am not sure if I am on the right track. Any help greatly appreciated! (suggestions on how to set the split size best in the latter case are also helpful)
Some extra information to be more clear:
There is however another reason I wanted to process multiple files per task and that is that I want to be able to use combiners. The output of a single task only produces unique keys, but between several files there might be a substantial overlap. By processing multiple files with the same map task I can implement a combiner or make use of in-mapper combining. This would definitely limit the amount of IO. The fact is that although a single file has a size of a couple of kilobytes the output of this file is roughly 30 * 10^6 key-value pairs which easily leads to a couple of Gigabytes.
I don't think there is another way to allow combining (or in-mapper combining) if you have only one file per maptask?
Regards, Dieter
To get the best utilization for your long running map tasks, you'll probably want each file to run in it's own task rather than using your implementation of CombineInputFormat.
Using combine input format is usually advisable when you have small files that are quickly processed as it takes longer to instantiate the map task (jvm, config etc) than it does to process the file itself. You can alleviate this you by configuring 'JVM reuse', but still for a CPU bound tasks (as opposed to an IO bound tasks) you'll just want to run map tasks for each input file.
You will however need your Job Tracker to have a good chunk of memory allocated to it so it can manage and track the 20k map tasks created.
Edit: In response to your updated question, if you want to use combined input format then you'll need to set the configuration properties for min / max size per node / rack. Hadoop won't be able to do anything more intelligible than try and keep files that are data local or rack local together in the same map task.

Actual processing time of hadoop job

My cluster is currently occupied by a job A that takes long time and has VERY_LOW priority.
I started another job B yesterday while A was already running and I think it should have ran quite fast.
However, I saw it took 47 minutes at the job details.
I don't think this is the actual processing time.
I'm trying to find out when the job really started.
Where can I look?
I cant seem to find anywhere which states exactly what you're after, but you could look into the job in the job tracker on port 50030 and look at the individual mapper and reducer details. On there you can see how long each individual mapper and reducer took to complete their tasks from their start and end times.
If there weren't any mappers or reducers free when you started the second job, the second job wouldnt be able to make any progress until the first job released them, which might explain why it claimed to take so long, as they might not have actually been running simultaneously. The time of the job being started and the first actual mapper starting should give you an indication of whether it was just waiting around for resources, which means you can deduct the period of time between the job and mapper's start times from the overall 47 minutes.

Is there a way to configure timeout for speculative execution in Hadoop?

I have hadoop job with tasks that are expected to run for significant length of fime (few minues). However hadoop starts speculative execution too soon. I do not want to turn speculative execution completely off but I want to increase duration of time hadoop waits before considering job for speculative execution. Is there a config option to control this timeout?
Thanks
I don't believe the speculative execution time is currently configurable. On the other hand, there's probably no need to adjust it. Speculative execution is meant to bail you out of slow running tasks (usually due to degraded hardware performance). If you have available cluster resources such that spec exec is kicking in, what's the harm in letting it do so? Note that minutes is not considered "significant" and is more than normal for medium or larger size jobs.
It's also worth noting that while mapper spec exec is almost always fine and low overhead to the system, reducer spec exec can hurt and probably should be disabled. The rationale is that if a mapper is progressing slowly and there are available resources where the data is local (normal), there's no shared overhead. If a reducer is performing slowly, starting another attempt of the same task will simply double the network load - normally the most painful part of reducer execution. If the network is what is causing the reducer to be "slow," starting a second attempt only hurts both attempts.
If you truly have a use case for adjusting the spec exec time, it might be worth filing a jira at http://issues.apache.org.
Hope this helps.

Resources