Can not install Image acquisition package in Octave - image

According to the relevant wiki page (http://wiki.octave.org/Image_acquisition_package) to install the image acquisition package you enter:
pkg install -forge image-acquisition
I did that in the Octave console and I got an error message:
pkg install -forge image-acquisition
error: get_forge_pkg: could not read URL, please verify internet
connection
error: called from
get_forge_pkg at line 77 column 7
get_forge_download at line 26 column 12
pkg at line 393 column 29
Could you help me install the package? Thank you.

I got the same error on Ubuntu 19.04 after installing Octave from a snap package. The problem was that Apparmor was blocking requests to network resources. The problem was corrected by editing the Octave Apparmor profile file. The following steps fixed the problem:
Add following rules to the file: /var/lib/snapd/apparmor/profiles/snap.octave.octave. The rules should be added to the bottom of the file, just before the closing parenthesis
Add following rules:
owner #{HOME}/.bash_logout r,
owner #{HOME}/.xinputrc r,
owner #{HOME}/.pam_environment r,
owner #{HOME}/.bashrc r,
owner #{HOME}/.bash_history r,
owner #{HOME}/.profile r,
owner #{HOME}/.cache/mesa_shader_cache/index rw,
owner #{HOME}/.sudo_as_admin_successful r,
/usr/share/ca-certificates/mozilla/* r,
/etc/ssl/certs/ r,
/run/systemd/resolve/stub-resolv.conf r,
/etc/hosts r,
/etc/host.conf r,
/etc/ssl/certs/ca-certificates.crt r,
network inet stream,
network inet6 dgram,
network inet dgram,
Reload the Octave Apparmor profile using the command: sudo apparmor_parser -r /var/lib/snapd/apparmor/profiles/snap.octave.octave
Restart Octave
Run the command pkg list -forge

I obtained this error in a network with blocked ports (only 80 and 443 allowed). After connecting to another network the error disappeared.

I'm guessing that you are using Windows. it appears that the Windows versions of Octave currently have an issue making https connections. Bug report #49869 has been created addressing this issue. It appears that the Windows version has not been compiled with proper configuration for ssl downloads, hence Octave cannot read the URL. I expect that pkg update will not work for you either.
Until that gets patched, you should be able to manually install the image acquisition package. Download the package file using the download link at the Octave Forge image-acquisition package page
Then, in Octave, navigate to the location where you saved the package file and type pkg install image-acquisition-0.2.2.tar.gz (or whatever the name is of the version you download).
Finally, since it seems you are using Windows, it is worth mentioning that the image-acquisition toolbox currently has limited (if any) functionality for non-Linux systems. According to the wiki you first linked, there are Linux library build dependencies for that package that are likely unavailable on your Windows system.There has been some recent discussion about this on the Octave help list here and here, but it is still a work in progress.

Related

ldf is not supported

I install asammdf package to read dat file in python. After installing asammdf using pip install asammdf, the installation is successful. However, when I import asammdf, I got ldf is not supported.
May I know how to solve this issue and after installing the asammdf? Moreover I also cannot open the spyder in my anaconda
That is just a warning message from the canmatrix library. If you don't use LIN database file (ldf files) for bus logging decoding then you can just ignore it.
If you really want to make it go away then just install the ldfparser package since this is required for ldf support ( see
https://github.com/ebroecker/canmatrix/blob/6ed291b73a5824e367615c99ee1b4e6084eb026e/setup.py#L98)

Installing toolboxes in Octave

In order to realise some course's activity in Octave, found in the following site
https://nbviewer.org/github/gpeyre/numerical-tours/blob/master/matlab/audio_1_processing.ipynb#
I needed to install some toolboxes found in
http://www.numerical-tours.com/installation_matlab/
Two of them seems to be easily installed via pkg install -forge ... (I have Linux Mint 19), these toolboxes are 'general' and 'signal', but 'graph' and 'wavelet_meshes' seems not to be directly available for Octave.
1 - So, if I downloaded them manually.. how should I install these packages? I do not even find Octave directory using 'whereis' in order to localise a proper folder to throw toolboxes files (its path shown located in /app/share/octave when open).
2 - Another thing.. should I spect to use toolboxes automatically after toolbox is installed? or may I indicate its selection in some specific way? ..I ask this because after running the following script chunk
n = 1024*16;
options.n = n;
[x,fs] = load_sound('bird', n);
command window throws the following message
error: 'load_sound' undefined near line 3, column 4
so I understand Octave does not recognises 'load_sound' function, which is from 'signal' toolbox (that is already installed).
Any suggestions?

Octave: error installing package on Windows

First of all, I know a lot of questions similar to mine have been asked, and nevertheless they don't help me solve the problem I'm facing. I'm running Octave 5.1.0.0 on Windows 10 Pro 64 bit. I'm having no issues but one: when I try to install Symbolic package by pkg install symbolic-2.7.1.tar.gz (downloaded from Octave Forge), I get the error
unpack: unarchiving program exited with status: 1
tar: Error opening archive: Failed to open
'/C/Users/smlvcfncst/Downloads/symbolic-2.7.1.tar.gz'
error: called from
unpack at line 274 column 5
untar at line 48 column 5
install at line 81 column 9
pkg at line 441 column 9
and I have no clue where the problem related to the unpacking could be. Not only I have 7z and Winrar installed, but moreover I use a full installation of Cmder, so my system has everything that is needed to work with a .tar.gz
I've tried in different terminals, both with and without administrator privileges, and the problem persists. How should I proceed then?
EDIT: Following Andy's suggestion, I let you know that even before installing Octave I already have installed and used both Python and MinGW, as well as sympy module. Moreover, my Octave installation was the most standard possible for Windows, that is using the official .exe installer. No other package, apart from those included with installation, have been added before I tried adding symbolic.
Thank you in advance.

Fault in reticulate in rstudio

476/5000
rstudio generates error when running R code with python code. At first the code worked very well but in the second installation it started to generate faults. Here is the link of the code in case you want to play #https: //www.r-bloggers.com/r-and-python-using-reticulate-to-get-the-best-of-both-worlds/
. My laptop is hp 4 gigs of ram and 500 mb of hard disk.
I would greatly appreciate who can explain the failure and how to solve it.
I have reinstalled anaconda last version twice.
library(reticulate)
use_python("/usr/local/bin/python")
use_virtualenv("r-reticulate")
os <- import("os")
Error: lexical error: invalid char in json text.
WARNING: The conda.compat modul
(right here) ------^
os$listdir(".")
Error: object 'os' not found
py_config()
Error: lexical error: invalid char in json text.
WARNING: The conda.compat modul
(right here) ------^
Actually, it comes from a deprecation warning reported a few days ago (fix compat import showing warning #8507).
But the fact is that this warning in "conda.compat" generates some errors, for example in the case of using conda environments in R through "reticulate" functions. This issue has been reported quite recently Conda warnings taken as errors #477.
The solution is to simply install the github version of "reticulate" in order to avoid these errors and ignore the conda warnings which shouldn't necessarily impede these functionalities. You can do it like this way:
remotes::install_github("rstudio/reticulate")
And don't forget to have the latest Rtools installed in your operating system!
This might be useful for you: https://docs.anaconda.com/anaconda/user-guide/tasks/switch-environment/
I have Anaconda, and set up Python 2 environment. Once activated, run 'use_python' with the path to that environment and set the 'required' parameter to TRUE.
I had the same problem. I solved the problem by installing an older version of conda.
In anaconda promt
conda install conda = 4.1.6

Installing Perl and PDL

I am currently trying - unsuccessfully to install perl PDL as I would like to automate some of my data analysis and graphics generation.
Unfortunately I seem unable to even install the necessary modules without issue, let alone create a small script to deal with my data files.
I have some rudementary experience with Perl but Nothing fancy and am using Windows 10 x64.
Initially I went for the x64 strawberry perl v5.24 installation, followed by ppm installations of Astro::FITS::Header, Convert::UU, OpenGL and PDL - as instructed here http://pdl.perl.org/?page=install. However, there were issues with the installation of Inline::C and after trying the example listed on page 5 of the PDL_Book_Latest http://sourceforge.net/projects/pdl/files/PDL/2.4.10/PDL-Book-20120205.pdf/download there wasn't any image appearing, nor image file in any location I could think to search. Back to Google and still no luck finding any information on the source of this issue so I decided to go back to square one and use an older version in the hopes that it would be more well documented.
So, uninstallation of strawberry perl through Windows installed programs dialog, deletion of strawberry folder and registry entries containing "strawberry". Then a new installation of perl, with the Padre IDE, v5.14 - maybe some debugging fonctionality will help pinpoint the errors. Started installing the same modules (Astro::FITS::Header, Convert::UU, OpenGL, PGPLOT). Astro and Convert worked fine, but the OpenGL started throwing errors about ExtUtils::F77 which I am apparently missing after a few more hours searching. I go to install this module and it keeps giving errors about 'gfortan' being an unknown command... It was my understanding that the idea of PDL was to avoid fortran and C, and I have found next to no information about this installation problem so far.
So i decided to try an alternative approach. I installed the ppm module from cpan and repeated the initial installation process through the ppm command. This time i get:
"Unknown element 'PROVIDE' found inside SOFTPKG. at C:/Dwimperl/perl/site/lib/PPM.pm line 1462."
So my question is as follows:
Am I missing some critical step in the installation process? Is my system just handing this really badly, and if so is there any sort of possible work around? Is the fact that I tried two different versions liable to create path issues that could be at the root of this problem?
Could anyone provide an alternative and preferably not too complex route to install PDL with a given perl installation on Windows 10?
EDIT 1:
Here is the code for the error I got trying to install Inline::C, an apparent pre-requisite for PDL
code deleted to make space for updates...
EDIT 3:
I reinstalled GnuWin32 in the directory specified by PATH, rather that changing PATH, and the tried the installation again. Inline::C gave the same 'diff' and 'rm' errors. So i ran "cpanm --notest 'package'" to install Inline::C and then PDL, both said they were successful. However, even using '--notest' cpanm could not install OpenGL and PGPLOT.
The final objectif is to be able to produce graphics using the fonctions from PGPLOT: for example
# use PDL;
# use PDL::Graphics::PGPLOT;
# imag(sin(rvals(200,200)+1));
yet this doesn't work of course if PGPLOT can't install.
EDIT 4:
Tried the fix found by #Dr.Avalange at sourceforge https://sourceforge.net/p/pogl/bugs/26/ and noticed that I seem to have multiple copies of this file.
Here
Is this normal...?
EDIT 5:
So i uninstalled perl, deleted any lingering files I could find in %APPDATA%, %USERPROFILE% and C:/DWIM, and then ran ccleaner just in case I missed anything.
I then downloaded Strawberry perl 5.24.1 x64 for Windows and installed it.
After this, I ran 'cpanm Astro::FITS::Header', cpanm 'Convert-UU' and 'cpanm OpenGL' as per http://pdl.perl.org/?page=install. This all worked fine. Then I ran 'cpanm PDL' which installed Inline, Pegex, Win32::Mutex and Module::Compile dependencies. However, if had the same error with Inline::C that you mentioned previously.
I already had GetGnuWin32 installed before so not sure why this isn't working. The Windows 'Path' environment (not PATH - this doesn't exist according to the advaced system dialogue) is noted as
%USERPROFILE%\AppData\Local\Microsoft\WindowsApps;
In this directory I have the folder GetGnuWin32 which should have installed all the packages from the link you provided, unless there is a supplementary step that I missed to install this correctly? So I redownloaded the DiffUtils setup and ran that, installing to \programfiles(x86) (default option). I then reran 'cpanm PDL'.
I still get the same 'diff' error message. So is DiffUtils, not installing properly? (I did close and re-open the commandline between tries and after the installation)
EDIT 6:
So after installing PDL and PGPLOT with --notest I tried to run the following test and it failed. See below
C:\Windows\system32>perldl
perlDL shell v1.357
PDL comes with ABSOLUTELY NO WARRANTY. For details, see the file
'COPYING' in the PDL distribution. This is free software and you
are welcome to redistribute it under certain conditions, see
the same file for details.
ReadLines, NiceSlice, MultiLines enabled
Reading PDL/default.pdl...
Found docs database C:/Strawberry/perl/site/lib/PDL/pdldoc.db
Type 'help' for online help
Type 'demo' for online demos
Loaded PDL v2.017 (supports bad values)
Note: AutoLoader not enabled ('use PDL::AutoLoader' recommended)
pdl> use PDL::Graphics//PLplot
Unknown regexp modifier "/P" at (eval 62) line 4, at end of line
Unknown regexp modifier "/L" at (eval 62) line 4, at end of line
Unknown regexp modifier "/t" at (eval 62) line 4, at end of line
BEGIN not safe after errors--compilation aborted at (eval 62) line 5, <DATA> line 207.
pdl> use PDL::Graphics::PLplot
Can't locate PDL/Graphics/PLplot.pm in #INC (you may need to install the PDL::Graphics::PLplot module) (#INC contains: C:/Strawberry/perl/site/lib/MSWin32-x64-multi-thread C:/Strawberry/perl/site/lib C:/Strawberry/perl/vendor/lib C:/Strawberry/perl/lib .) at (eval 72) line 5.
BEGIN failed--compilation aborted
pdl> use PDL
pdl> use lib 'C:/Strawberry/perl/site/lib/PDL/Graphics'
pdl> use PGPLOT
pdl> use PDL::Graphics::PGPLOT
pdl> imag(sin(rvals(200,200)+1))
Undefined subroutine &PDL::Graphics::PGPLOT::pgqinf called at C:/Strawberry/perl/site/lib/PDL/Graphics/PGPLOT.pm line 408, <DATA> line 90.
pdl> exit
C:\Windows\system32>cpanm PDL::Graphics::PGPLOT::pgqinf
! Finding PDL::Graphics::PGPLOT::pgqinf on cpanmetadb failed.
! Finding PDL::Graphics::PGPLOT::pgqinf () on mirror http://www.cpan.org failed.
! Couldn't find module or a distribution PDL::Graphics::PGPLOT::pgqinf
C:\Windows\system32>cpan PDL::Graphics::PGPLOT::pgqinf
Loading internal null logger. Install Log::Log4perl for logging messages
CPAN: CPAN::SQLite loaded ok (v0.211)
Database was generated on Thu, 13 Apr 2017 13:49:14 GMT
C:\Windows\system32>
There was already a directory problem but I managed to point it in th right direction I had thought. Also tried installing the PLplot 'cpanm' said the installation was successful but there is no .pm file, only a .pd in another directory and so the use PDL::Graphics::PLplot fails as there is no .pm file to find.
EDIT: 7
So retrying ppm install http://www.sisyphusion.tk/ppm/PGPLOT.ppd seemed to work this time as the links int he explanation you provided are no longer in use
http://www.kalinabears.com.au/w32perl/pgplot-5.2.2-mingw32.tar.bz2
http://jrfonseca.home.dyndns.org/projects/gnu-win32/software/ported/patches/pgplot-5.2.2-mingw32.diff.gz
And while this seemed to work, there are no traces of the files that were listed as necessary for the installation, unless they were just for this specific method?
pgplot/bin/cpgplot.dll
pgplot/bin/pgplot.dll
pgplot/bin/grfont.dat
pgplot/include/cpgplot.h
pgplot/lib/cpgplot.a
pgplot/lib/pgplot.a
finally, trying the example again gives the following; no errors, but no image either...
Microsoft Windows [version 10.0.14393]
(c) 2016 Microsoft Corporation. Tous droits réservés.
C:\Windows\system32>perldl
perlDL shell v1.357
PDL comes with ABSOLUTELY NO WARRANTY. For details, see the file
'COPYING' in the PDL distribution. This is free software and you
are welcome to redistribute it under certain conditions, see
the same file for details.
ReadLines, NiceSlice, MultiLines enabled
Reading PDL/default.pdl...
Found docs database C:/Strawberry/perl/site/lib/PDL/pdldoc.db
Type 'help' for online help
Type 'demo' for online demos
Loaded PDL v2.017 (supports bad values)
Note: AutoLoader not enabled ('use PDL::AutoLoader' recommended)
pdl> use PDL
pdl> use PDL::Graphics::PGPLOT
pdl> imag(rvals(200,200)+1)
%PGPLOT, Unable to read font file: grfont.dat
%PGPLOT, Use environment variable PGPLOT_FONT to specify the location of the PGPLOT grfont.dat file.
Displaying 200 x 200 image from 1 to 142.421356201172, using 240 colors (16-255)...
pdl> $ENV{PGPLOT_FONT} = "C:/Strawberry/perl/site/lib/PGPLOT/pgplot_supp"
pdl> imag(rvals(200,200)+1)
Displaying 200 x 200 image from 1 to 142.421356201172, using 240 colors (16-255)...
pdl>
After translating from French I can see that you don't have diff in your system. Either install diff (part of gnu32: http://gnuwin32.sourceforge.net/) or just skip the tests. See also:
https://github.com/ingydotnet/inline-c-pm/issues/60
With Strawberry 5.24.1 simply type the following from the command prompt:
cpanm --notest PDL
or if you want to watch everything that's going on:
cpanm -v --notest PDL
This will take some time to run.

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