Issue on concatenating files shellscipt - shell

Sorry, I'm from Brazil and my english is not fluent.
I wanna concatenate 20 files using a shellscript through cat command. However when I run it from a file, all content of files are showed on the screen.
When I run it directly from terminal, works perfectly.
That's my code above:
#!/usr/bin/ksh
set -x -a
. /PROD/INCLUDE/include.prod
DATE=`date +'%Y%m%d%H%M%S'`
FINAL_NAME=$1
# check if all paremeters are passed
if [ -z $FINAL_NAME ]; then
echo "Please pass the final name as parameter"
exit 1
fi
# concatenate files
cat $DIRFILE/AI6LM760_AI6_CF2_SLOTP01* $DIRFILE/AI6LM761_AI6_CF2_SLOTP02* $DIRFILE/AI6LM763_AI6_CF2_SLOTP04* \
$DIRFILE/AI6LM764_AI6_CF2_SLOTP05* $DIRFILE/AI6LM765_AI6_CF2_SLOTP06* $DIRFILE/AI6LM766_AI6_CF2_SLOTP07* \
$DIRFILE/AI6LM767_AI6_CF2_SLOTP08* $DIRFILE/AI6LM768_AI6_CF2_SLOTP09* $DIRFILE/AI6LM769_AI6_CF2_SLOTP10* \
$DIRFILE/AI6LM770_AI6_CF2_SLOTP11* $DIRFILE/AI6LM771_AI6_CF2_SLOTP12* $DIRFILE/AI6LM772_AI6_CF2_SLOTP13* \
$DIRFILE/AI6LM773_AI6_CF2_SLOTP14* $DIRFILE/AI6LM774_AI6_CF2_SLOTP15* $DIRFILE/AI6LM775_AI6_CF2_SLOTP16* \
$DIRFILE/AI6LM776_AI6_CF2_SLOTP17* $DIRFILE/AI6LM777_AI6_CF2_SLOTP18* $DIRFILE/AI6LM778_AI6_CF2_SLOTP19* \
$DIRFILE/AI6LM779_AI6_CF2_SLOTP20* > CF2_FINAL_TEMP
mv $DIRFILE/CF2_FINAL_TEMP $DIRFILE/$FINAL_NAME

I solved the problem putting the cat block inside a function, and redirecting stdout to the final file.
Ex:
concatenate()

Related

how can i run some custom commands in a loop sequentially

There are variables that I need to change and run sequentially within certain codes.For example, the ionex_list variable looks like this and i need to change this in a loop. I have 3 variable files like this and 9 pieces of data in a row (ionex_list,receiver_ids,data_record).
ionex_list data_record
jplg0910.19i.Z ISTA00TUR_R_20190910000_01D_30S_MO.crx.gz
jplg0920.19i.Z ISTA00TUR_R_20190920000_01D_30S_MO.crx.gz
... ...
jplg0980.19i.Z ISTA00TUR_R_20190980000_01D_30S_MO.crx.gz
jplg0990.19i.Z ISTA00TUR_R_20190990000_01D_30S_MO.crx.gz
For example, I need to show ISTA00TUR_R_20190910000_01D_30S_MO.crx.gz as -dataFile in rnxEditGde.py, but I get the error "File: "/y2019/d091" does not exist" and I cannot show the path. these .gz files are a few directories under from the directory I'm working in. Since I couldn't pass the rnxEditGde.py part, I can't see if the codes below work properly.
dir=`pwd`
function pl {
sed -n "$1p" $2
}
for j in {091..099}; do
ids=$(pl $j receiver_ids)
ionex=$(pl $j ionex_list)
dataRecordFile=$(pl $j data_record)
gd2e.py -mkTreeS Trees
sed -i "s/jplg.*/**$ionex**/g" $dir/Trees/ppp_0.tree
rnxEditGde.py -dataFile "/y2019/d${j}/**$dataRecordFile**" -o dataRecordFile.Orig.gz
gd2e.py \
-treeSequenceDir Trees \
-drEditedFile** $dataRecordFile** \
-antexFile goa-var/etc/antennaCalsGNSS/igs14_2038.atx \
-GNSS https://sideshow.jpl.nasa.gov/pub/JPL_GNSS_Products/MultiGNSS_Rapid_Test\
-runType PPP \
-recList **$ids** \
-staDb /goa-var/sta_info/sta_db_qlflinn \
>gd2e.log 2>gd2e.err
done

LiquiBase CLI BASH script not outputting full CLI with ECHO

Hey all I am new to the world of BASHing :)
I am trying to put together this CLI line of code by doing the following:
echo "------"
echo '--url=$URL '\
'--username=$UN '\
'--password=$PW '\
'--referenceUrl=$RURL '\
'--referenceUsername=$RUN '\
'--referencePassword=$RPW '\
'--changeSetAuthor=TD '\
'--diffTypes=tables, views, columns, indexes, foreignkeys, primarykeys, uniqueconstraints '\
'$LIQUI_ACTION'
echo "------"
And the output I am getting is this:
------
--url=$URL --username=$UN
/jenkins/liquibase-3.6.2/liquibase: line 141: --password=$PW : command not found
I can tell right off that its not placing the varibles' value within the cli. Second, I'm not sure why its saying command not found when I am only outputting text? I am just doing the above to make sure all of it is indeed the correct data in the $ and also that it's spaced between each command correctly.
So any help about the above would be great!
UPDATE FOR #RavinderSingh13:
code used:
echo "------"
echo "--url=$URL \
--username=$UN \
--password=$PW \
--referenceUrl=$RURL \
--referenceUsername=$RUN \
--referencePassword=$RPW \
--changeSetAuthor=TD \
--diffTypes=tables, views, columns, indexes, foreignkeys, primarykeys, uniqueconstraints \
$LIQUI_ACTION"
echo "------"

Cron job - exported file emailed is blank

I am receiving the email from the following CRON job but with a blank file attached. I have checked the /home/XXXXXX/public_html/tmp/ directory and a good tqhsa_hikashop_order.txt file is created in that /tmp/ folder but the one attached to the email that I receive is empty.
mysql --database=XXXXXXXX_jml_6UCHadruwR8veju3 -u XXXXXXXX_8eh6Nu --password=fRa6r7wRerEtuzud -B -e "SELECT order_number, order_created, order_invoice_number, order_full_price, order_discount_code, order_discount_price, order_payment_method, order_payment_price FROM tqhsa_hikashop_order;" > /home/XXXXXXXX/public_html/tmp/tqhsa_hikashop_order.txt | mail -s "Daily Discount Table Dump" -a /home/XXXXXXXX/public_html/tmp/tqhsa_hikashop_order.txt luke#example.com
Any ideas why the good text file is not being attached?
You need to ensure that your first command finishes before running the second, so that the file exists on disk.
So essentially replace the | with a &&:
mysql \
--database=XXXXXXXX_jml_6UCHadruwR8veju3 \
-u XXXXXXXX_8eh6Nu \
--password=fRa6r7wRerEtuzud \
-B \
-e "SELECT order_number, order_created, order_invoice_number, order_full_price, order_discount_code, order_discount_price, order_payment_method, order_payment_price FROM tqhsa_hikashop_order;" > /home/XXXXXXXX/public_html/tmp/tqhsa_hikashop_order.txt \
&& \
mail \
-s "Daily Discount Table Dump" \
-a /home/XXXXXXXX/public_html/tmp/tqhsa_hikashop_order.txt luke#example.com
To illustrate using an example:
myuser#myshell:~ $ echo "testing" > testy.txt | cat testy.txt
cat: testy.txt: No such file or directory
myuser#myshell:~ $ echo "testing" > testy.txt && cat testy.txt
testing

Makefile: read input variable and set several variables

I have a makefile where I want to read file name from input and then make other names based on it`s name. I have tried the following code
mlext = .ml
testext = test.ml
nativeext = test.native
test:
#read -p "Enter file name: " file; \
echo $$file$(mlext); \
echo $$file$(testext); \
echo $$file$(nativeext)
for example:
If i type: foo
then I want to get foo.ml, footest.ml, footest.native
however, I can only get foo.ml. For the rest two i only get .ml and .native
How can i fix this?
First, let us see what is the exact recipe given to the shell by removing the # in your Makefile:
read -p "Enter file name: " file; \
echo $file.ml; \
echo $filetest.ml; \
echo $filetest.native;
The issue is thus that the content of $(testext) gets appended to $$file, creating the shell variable $filetest, which (very probably) does not exist, resulting in an empty string in the end. This does not occur with $(mlext), as the initial dot cannot be part of a variable name.
To overcome this, use $${file} instead of $$file in your Makefile rule.

Run a string as a command within a Bash script

I have a Bash script that builds a string to run as a command
Script:
#! /bin/bash
matchdir="/home/joao/robocup/runner_workdir/matches/testmatch/"
teamAComm="`pwd`/a.sh"
teamBComm="`pwd`/b.sh"
include="`pwd`/server_official.conf"
serverbin='/usr/local/bin/rcssserver'
cd $matchdir
illcommando="$serverbin include='$include' server::team_l_start = '${teamAComm}' server::team_r_start = '${teamBComm}' CSVSaver::save='true' CSVSaver::filename = 'out.csv'"
echo "running: $illcommando"
# $illcommando > server-output.log 2> server-error.log
$illcommando
which does not seem to supply the arguments correctly to the $serverbin.
Script output:
running: /usr/local/bin/rcssserver include='/home/joao/robocup/runner_workdir/server_official.conf' server::team_l_start = '/home/joao/robocup/runner_workdir/a.sh' server::team_r_start = '/home/joao/robocup/runner_workdir/b.sh' CSVSaver::save='true' CSVSaver::filename = 'out.csv'
rcssserver-14.0.1
Copyright (C) 1995, 1996, 1997, 1998, 1999 Electrotechnical Laboratory.
2000 - 2009 RoboCup Soccer Simulator Maintenance Group.
Usage: /usr/local/bin/rcssserver [[-[-]]namespace::option=value]
[[-[-]][namespace::]help]
[[-[-]]include=file]
Options:
help
display generic help
include=file
parse the specified configuration file. Configuration files
have the same format as the command line options. The
configuration file specified will be parsed before all
subsequent options.
server::help
display detailed help for the "server" module
player::help
display detailed help for the "player" module
CSVSaver::help
display detailed help for the "CSVSaver" module
CSVSaver Options:
CSVSaver::save=<on|off|true|false|1|0|>
If save is on/true, then the saver will attempt to save the
results to the database. Otherwise it will do nothing.
current value: false
CSVSaver::filename='<STRING>'
The file to save the results to. If this file does not
exist it will be created. If the file does exist, the results
will be appended to the end.
current value: 'out.csv'
if I just paste the command /usr/local/bin/rcssserver include='/home/joao/robocup/runner_workdir/server_official.conf' server::team_l_start = '/home/joao/robocup/runner_workdir/a.sh' server::team_r_start = '/home/joao/robocup/runner_workdir/b.sh' CSVSaver::save='true' CSVSaver::filename = 'out.csv' (in the output after "runnning: ") it works fine.
You can use eval to execute a string:
eval $illcommando
your_command_string="..."
output=$(eval "$your_command_string")
echo "$output"
I usually place commands in parentheses $(commandStr), if that doesn't help I find bash debug mode great, run the script as bash -x script
don't put your commands in variables, just run it
matchdir="/home/joao/robocup/runner_workdir/matches/testmatch/"
PWD=$(pwd)
teamAComm="$PWD/a.sh"
teamBComm="$PWD/b.sh"
include="$PWD/server_official.conf"
serverbin='/usr/local/bin/rcssserver'
cd $matchdir
$serverbin include=$include server::team_l_start = ${teamAComm} server::team_r_start=${teamBComm} CSVSaver::save='true' CSVSaver::filename = 'out.csv'
./me casts raise_dead()
I was looking for something like this, but I also needed to reuse the same string minus two parameters so I ended up with something like:
my_exe ()
{
mysql -sN -e "select $1 from heat.stack where heat.stack.name=\"$2\";"
}
This is something I use to monitor openstack heat stack creation. In this case I expect two conditions, an action 'CREATE' and a status 'COMPLETE' on a stack named "Somestack"
To get those variables I can do something like:
ACTION=$(my_exe action Somestack)
STATUS=$(my_exe status Somestack)
if [[ "$ACTION" == "CREATE" ]] && [[ "$STATUS" == "COMPLETE" ]]
...
Here is my gradle build script that executes strings stored in heredocs:
current_directory=$( realpath "." )
GENERATED=${current_directory}/"GENERATED"
build_gradle=$( realpath build.gradle )
## touch because .gitignore ignores this folder:
touch $GENERATED
COPY_BUILD_FILE=$( cat <<COPY_BUILD_FILE_HEREDOC
cp
$build_gradle
$GENERATED/build.gradle
COPY_BUILD_FILE_HEREDOC
)
$COPY_BUILD_FILE
GRADLE_COMMAND=$( cat <<GRADLE_COMMAND_HEREDOC
gradle run
--build-file
$GENERATED/build.gradle
--gradle-user-home
$GENERATED
--no-daemon
GRADLE_COMMAND_HEREDOC
)
$GRADLE_COMMAND
The lone ")" are kind of ugly. But I have no clue how to fix that asthetic aspect.
To see all commands that are being executed by the script, add the -x flag to your shabang line, and execute the command normally:
#! /bin/bash -x
matchdir="/home/joao/robocup/runner_workdir/matches/testmatch/"
teamAComm="`pwd`/a.sh"
teamBComm="`pwd`/b.sh"
include="`pwd`/server_official.conf"
serverbin='/usr/local/bin/rcssserver'
cd $matchdir
$serverbin include="$include" server::team_l_start="${teamAComm}" server::team_r_start="${teamBComm}" CSVSaver::save='true' CSVSaver::filename='out.csv'
Then if you sometimes want to ignore the debug output, redirect stderr somewhere.
For me echo XYZ_20200824.zip | grep -Eo '[[:digit:]]{4}[[:digit:]]{2}[[:digit:]]{2}'
was working fine but unable to store output of command into variable.
I had same issue I tried eval but didn't got output.
Here is answer for my problem:
cmd=$(echo XYZ_20200824.zip | grep -Eo '[[:digit:]]{4}[[:digit:]]{2}[[:digit:]]{2}')
echo $cmd
My output is now 20200824

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