Adding axes eats up my data - d3.js

Question

I'm following the D3 tutorial but adding the axis makes half of my data disappear and I don't understand why. I thought that maybe the axis is taking up the space that's meant for the data so I added an extra 10px to the transform property, but it doesn't make any difference.
var GIST = "https://gist.githubusercontent.com/charisseysabel/f8f48fbf11b8a1b0d62cbe2d6bdc2aa6/raw/2ead1537adb822fbd59a666afd5334d525480a13/nano-2017.tsv"
var width = 1000,
height = 550,
margin = {top: 20, right: 30, bottom: 30, left: 4};
var y = d3.scaleLinear()
.range([height, 0]);
var yScale = d3.scaleLinear()
.range([height, 0]);
var xScale = d3.scaleLinear()
.range([0, width]);
var xAxis = d3.axisLeft(yScale);
var yAxis = d3.axisBottom(xScale);
var chart = d3.select(".chart")
.attr("width", width)
.attr("height", height);
chart.append("g")
.attr("transform", "translate(10, 0)")
.call(xAxis);
chart.append("g")
.attr("transform", "translate(0, 540)")
.call(yAxis);
d3.tsv(GIST, type, function(error, data) {
y.domain([0, d3.max(data, function(d) { return d.value; })]);
var barWidth = width / data.length;
var bar = chart.selectAll("g")
.data(data)
.enter().append("g")
.attr("transform", function(d, i) {
return "translate(" + ((i * barWidth) + 10) + ",0)"; }
);
bar.append("rect")
.attr("y", function(d) { return y(d.value); })
.attr("height", function(d) { return height - y(d.value); })
.attr("width", barWidth - 1);
bar.append("text")
.attr("x", (barWidth / 2) - 2)
.attr("y", function(d) { return y(d.value) + 3; })
.attr("dy", ".75em")
.text(function(d) { return d.value; });
});
function type(d) {
d.value = +d.value;
return d;
}

Answer 1

When you do this...
var bar = chart.selectAll("g").etc...
... you're selecting group elements that already exist in the SVG, which are the axes, and binding your data to them.
There are two easy solutions:
Move your code that creates the axes to the bottom of the d3.tsv, that is, after you have appended the bars.
Select something that doesn't exist, like
var bar = chart.selectAll(null).etc. To read more about the logic behind selectAll(null), have a look at my answer here.