sort -o appends newline to end of file - why? - bash

I'm working on a small text file with a list of words in it that I want to add a new word to, and then sort. The file doesn't have a newline at the end when I start, but does after the sort. Why? Can I avoid this behavior or is there a way to strip the newline back out?
Example:
words.txt looks like
apple
cookie
salmon
I then run printf "\norange" >> words.txt; sort words.txt -o words.txt
I use printf rather than echo figuring that'll avoid the newline, but the file then reads
apple
cookie
orange
salmon
#newline here
If I just run printf "\norange" >> words.txt orange appears at the bottom of the file, with no newline, ie;
apple
cookie
salmon
orange

This behavior is explicitly defined in the POSIX specification for sort:
The input files shall be text files, except that the sort utility shall add a newline to the end of a file ending with an incomplete last line.
As a UNIX "text file" is only valid if all lines end in newlines, as also defined in the POSIX standard:
Text file - A file that contains characters organized into zero or more lines. The lines do not contain NUL characters and none can exceed {LINE_MAX} bytes in length, including the newline character. Although POSIX.1-2008 does not distinguish between text files and binary files (see the ISO C standard), many utilities only produce predictable or meaningful output when operating on text files. The standard utilities that have such restrictions always specify "text files" in their STDIN or INPUT FILES sections.

Think about what you are asking sort to do.
You are asking it "take all the lines, and sort them in order."
You've given it a file containing four lines, which it splits to the following strings:
"salmon\n"
"cookie\n"
"orange"
It sorts these for you dutifully:
"cookie\n"
"orange"
"salmon\n"
And it then outputs them as a single string:
"cookie
orangesalmon
"
That is almost certainly exactly what you do not want.
So instead, if your file is missing the terminating newline that it should have had, the sort program understands that, most likely, you still intended that last line to be a line, rather than just a fragment of a line. It appends a \n to the string "orange", making it "orange\n". Then it can be sorted properly, without "orange" getting concatenated with whatever line happens to come immediately after it:
"cookie\n"
"orange\n"
"salmon\n"
So when it then outputs them as a single string, it looks a lot better:
"cookie
orange
salmon
"
You could strip the last character off the file, the one from the end of "salmon\n", using a range of handy tools such as awk, sed, perl, php, or even raw bash. This is covered elsewhere, in places like:
How can I remove the last character of a file in unix?
But please don't do that. You'll just cause problems for all other utilities that have to handle your files, like sort. And if you assume that there is no terminating newline in your files, then you will make your code brittle: any part of the toolchain which "fixes" your error (as sort kinda does here) will "break" your code.
Instead, treat text files the way they are meant to be treated in unix: a sequence of "lines" (strings of zero or more non-newline bytes), each followed by a newline.
So newlines are line-terminators, not line-separators.
There is a coding style where prints and echos are done with the newline leading. This is wrong for many reasons, including creating malformed text files, and causing the output of the program to be concatenated with the command prompt. printf "orange\n" is correct style, and also more readable: at a glance someone maintaining your code can tell you're printing the word "orange" and a newline, whereas printf "\norange" looks at first glance like it's printing a backslash and the phrase "no range" with a missing space.

Related

Bash - Removing white space from indented multiline strings

This may be a more general question so sorry in advance. I am creating a script and thought it would be good to use multi-line strings instead of using multiple printf or echo statements. Say I have the following:
while :
do
printf "line 1
line 2
line 3"
done
The second and third lines would be printed with a space in front because of the indentation in the file.
l1
line 2
line 3
Is there a way to prevent that aside from removing the indentation on the code? Also, is it considered a better practice to just multiple printf/echo statements if you need to output information that spans multiple lines?
Indent with tabs (here whitespace) and use a heredoc (with <<-)
cat <<- EOF
line 1
line 2
line 3
EOF
Multi-line strings will always look a bit bad, or have some other downsides, I'm afraid. The most legible way to embed them in bash code is probably the here-doc, which shows the string (almost) exactly like it will look when output. As an extra knack, you can use extra punctuation to make the here-doc delimiter to stand out from the string itself too, like so:
if true
then
some commands
cat <<"____EndOfTextBlock____"
This text here
spans multiple
lines.
____EndOfTextBlock____
some other commands
even more commands
fi

Newlines in shell script variable not being replaced properly

Situation: Using a shell script (bash/ksh), there is a message that should be shown in the console log, and subsequently sent via email.
Problem: There are newline characters in the message.
Example below:
ErrMsg="File names must be unique. Please correct and rerun.
Duplicate names are listed below:
File 1.txt
File 1.txt
File 2.txt
File 2.txt
File 2.txt"
echo "${ErrMsg}"
# OK. After showing the message in the console log, send an email
Question: How can these newline characters be translated into HTML line breaks for the email?
Constraint: We must use HTML email. Downstream processes (such as Microsoft Outlook) are too inconsistent for anything else to be of use. Simple text email is usually a good choice, but off the table for this situation.
To be clear, the newlines do not need to be completely removed, but HTML line breaks must be inserted wherever there is a newline character.
This question is being asked because I have already attempted to use several commands, such as sed, tr, and awk with varying degrees of success.
TL;DR: The following snippet will do the job:
ErrMsg=`echo "$ErrMsg"|awk 1 ORS='<br/>'`
Just make sure there are double quotes around the variable when using echo.
This turned out to be a tricky situation. Some notes of explanation are below.
Using sed
Turns out, sed reads through input line by line, which makes finding and replacing those newlines somewhat outside the norm. There were several clever tricks that appeared to work, but I felt they were far too complicated to apply appropriately to this rather simple situation.
Using tr
According to this answer the tr command should work. Unfortunately, this only translates character by character. The two character strings are not the same length, and I am limited to translating the newline into a space or other single character.
For the following:
ErrMsg="Line 1
Line 2
"
ErrMsg=`echo $ErrMsg| tr '\n' 'BREAK'`
# You might expect:
# "Line 1BREAKLine 2BREAK"
# But instead you get:
# "Line 1BLine 2B"
echo "${ErrMsg}"
Using awk
Using awk according to this answer initially appeared to work, but due to some other circumstances with echo there was a subtle problem. The solution is noted in this forum.
You must have double-quotes around your variable, or echo will strip out all newlines.(Of course, awk will receive the characters with a newline at the end, because that's what echo does after it echos stuff.)
This snippet is good: (line breaks in the middle are preserved and replaced correctly)
ErrMsg=`echo "$ErrMsg"|awk 1 ORS='<br/>'`
This snipped is bad: (newlines converted to spaces by echo, one line break at end)
ErrMsg=`echo $ErrMsg|awk 1 ORS='<br/>'`
You can wrap your message in HTML using <pre>, something like
<pre>
${ErrMsg}
and more.
</pre>

How can i get only special strings (by condition) from file?

I have a huge text file with strings of a special format. How can i quickly create another file with only strings corresponding to my condition?
for example, file contents:
[2/Nov/2015][rule="myRule"]"GET
http://uselesssotialnetwork.com/picturewithcat.jpg"
[2/Nov/2015][rule="mySecondRule"]"GET
http://anotheruselesssotialnetwork.com/picturewithdog.jpg"
[2/Nov/2015][rule="myRule"]"GET
http://uselesssotialnetwork.com/picturewithzombie.jpg"
and i only need string with "myRule" and "cat"?
I think it should be perl, or bash, but it doesn't matter.
Thanks a lot, sorry for noob question.
Is it correct, that each entry is two lines long? Then you can use sed:
sed -n '/myRule/ {N }; /myRule.*cat/ {p}'
the first rule appends the nextline to patternspace when myRule matches
the second rule tries to match myRule followed by a cat in the patternspace , if found it prints patternspace
If your file is truly huge to the extent that it won't fit in memory (although files up to a few gigabytes are fine in modern computer systems) then the only way is to either change the record separator or to read the lines in pairs
This shows the first way, and assumes that the second line of every pair ends with a double quote followed by a newline
perl -ne'BEGIN{$/ = qq{"\n}} print if /myRule/ and /cat/' huge_file.txt
and this is the second
perl -ne'$_ .= <>; print if /myRule/ and /cat/' huge_file.txt
When given your sample data as input, both methods produce this output
[2/Nov/2015][rule="myRule"]"GET
http://uselesssotialnetwork.com/picturewithcat.jpg"

What changes when a file is saved in Kedit for windows that the unix2dos command doesn't do?

So I have a strange question. I have written a script that re-formats data files. I basically create new files with the right column order, spacing, and such. I then unix2dos these files (the program I am formatting these files for is DIPS for windows, and I assume that the files should be ansi). When I go to open the files in the DIPS Program however an error occurs and the file won't open.
When I create the same kind of data file through the DIPS program and open it in note pad, it matches exactly with the data files I have created with my script.
On the other hand if I open the data files that I have created with my script in Kedit first, save them, and then open them in the DIPS program everything works.
My question is what could saving in Kedit possibly do that unix2dos does not?
(Also if I try using note pad or word pad to save instead of Kedit the file doesn't open in DIPS)
Here is what was created using the diff command in unix
"
1,16c1,16
* This file is generated by Dips for Windows.
* The following 2 lines are the Title of this file.
Cobre Panama
Drill Hole B11106-GT
Number of Traverses: 0
Global Orientation is:
DIP/DIPDIRECTION
0.000000 (Declination)
NO QUANTITY
Number of extra columns are: 0
--
* This file is generated by Dips for Windows.
* The following 2 lines are the Title of this file.
Cobre Panama
Drill Hole B11106-GT
Number of Traverses: 0
Global Orientation is:
DIP/DIPDIRECTION
0.000000 (Declination)
NO QUANTITY
Number of extra columns are: 0
18c18
--
440c440
--
442c442
-1
-1
"
Any help would be appreciated! Thanks!
Okay! Figured it out.
Simply when you unix2dos your file you do not strip any space characters in between the last letter in a line and the line break character. When saving in Kedit you do strip the spaces between the last letter in a line and the line break character.
In my script I had a poor programing practice in which I was writing a string like this;
echo "This is an example string " >> outfile.txt
The character count is 32, and if you could see the break line character (chr(10)) the line would read;
This is an example string
If you unix2dos outfile.txt the line looks the same as above but with a different break line character. However when you place the file into Kedit and save it, now the character count is 25 and the line looks like this;
This is an example string
This occurs because Kedit does not preserve spaces at the end of a line. It places the return or line break character at the last letter or "non space" character in a line.
So programs that read literal input like DIPS (i'm guessing) or more widely used AutoCAD scripting will have a real problem with extra spaces before the return character. Basically in AutoCAD scripting a space in a line is treated as a return character. So if you have ten extra spaces at the end of a line it's treated the same as ten returns instead of the one you probably intended.
OH and if this helped you out or though it was good please give me a vote up!
unix2dos converts the line-break characters at the end of each line, from unix line breaks (10) to dos line breaks (13, 10)
Kedit could possible change the encoding of the file (like from ansi to UTF-8)
You can change the encoding of a file with the iconv utility (on a linux box)

Why does sed not replace overlapping patterns

I have a database unload file with field separated with the <TAB> character. I am running this file through sed to replace any occurences of <TAB><TAB> with <TAB>\N<TAB>. This is so that when the file is loaded into MySQL the \N in interpreted as NULL.
The sed command 's/\t\t/\t\N\t/g;' almost works except that it only replaces the first instance e.g. "...<TAB><TAB><TAB>..." becomes "...<TAB>\N<TAB><TAB>...".
If I use 's/\t\t/\t\N\t/g;s/\t\t/\t\N\t/g;' it replaces more instances.
I have a notion that despite the /g modifier this is something to do with the end of one match being the start of another.
Could anyone explain what is happening and suggest a sed command that would work or do I need to loop.
I know I could probably switch to awk, perl, python but I want to know what is happening in sed.
Not dissimilar to the perl solution, this works for me using pure sed
With #Robin A. Meade improvement
sed ':repeat;
s|\t\t|\t\n\t|g;
t repeat'
Explanation
:repeat is a label, used for branch commands, similar to batch
s|\t\t|\t\n\t|g; - Standard replace 2 tabs with tab-newline-tab. I still use the global flag because if you have, say, 15 tabs, you will only need to loop twice, rather than 14 times.
t repeat means if the "s" command did any replaces, then goto the label repeat, else it goes onto the next line and starts over again.
So it goes like this. Keep repeating (goto repeat) as long as there is a match for the pattern of 2 tabs.
While the argument can be made that you could just do two identical global replaces and call it good, this same technique could work in more complicated scenarios.
As #thorn-blake points out, sed just doesn't support advanced features like lookahead, so you need to do a loop like this.
Original Answer
sed ':repeat;
/\t\t/{
s|\t\t|\t\n\t|g;
b repeat
}'
Explanation
:repeat is a label, used for branch commands, similar to batch
/\t\t/ means match the pattern 2 tabs. If the pattern it matched, the command following the second / is executed.
{} - In this case the command following the match command is a group. So all of the commands in the group are executed if the match pattern is met.
s|\t\t|\t\n\t|g; - Standard replace 2 tabs with tab-newline-tab. I still use the global because if you have say 15 tabs, you will only need to loop twice, rather than 14 times.
b repeat means always goto (branch) the label repeat
Short version
Which can be shortened to
sed ':r;s|\t\t|\t\n\t|g; t r'
# Original answer
# sed ':r;/\t\t/{s|\t\t|\t\n\t|g; b r}'
MacOS
And the Mac (yet still Linux/Windows compatible) version:
sed $':r\ns|\t\t|\t\\\n\t|g; t r'
# Original answer
# sed $':r\n/\t\t/{ s|\t\t|\t\\\n\t|g; b r\n}'
Tabs need to be literal in BSD sed
Newlines need to be both literal and escaped at the same time, hence the single slash (that's \ before it is processed by the $, making it a single literal slash ) plus the \n which becomes an actual newline
Both label names (:r) and branch commands (b r when not the end of the expression) must end in a newline. Special characters like semicolons and spaces are consumed by the label name/branch command in BSD, which makes it all very confusing.
I know you want sed, but sed doesn't like this at all, it seems that it specifically (see here) won't do what you want. However, perl will do it (AFAIK):
perl -pe 'while (s#\t\t#\t\n\t#) {}' <filename>
As a workaround, replace every tab with tab + \N; then remove all occurrences of \N which are not immediately followed by a tab.
sed -e 's/\t/\t\\N/g' -e 's/\\N\([^\t]\)/\1/g'
... provided your sed uses backslash before grouping parentheses (there are sed dialects which don't want the backslashes; try without them if this doesn't work for you.)
Right, even with /g, sed will not match the text it replaced again. Thus, it's read <TAB><TAB> and output <TAB>\N<TAB> and then reads the next thing in from the input stream. See http://www.grymoire.com/Unix/Sed.html#uh-7
In a regex language that supports lookaheads, you can get around this with a lookahead.
Well, sed simply works as designed. The input line is scanned once, not multiple times. Maybe it helps to look at the consequences if sed used rescanning the input line to deal with overlapping patterns by default: in this case even simple substitutions would work quite differently--some might say counter-intuitively--, e.g.
s/^/ / inserting a space at the beginning of a line would never terminate
s/$/foo/ appending foo to each line - likewise
s/[A-Z][A-Z]*/CENSORED/ replacing uppercase words with CENSORED - likewise
There are probably many other situations. Of course these could all be remedied with, say, a substitution modifier, but at the time sed was designed, the current behavior was chosen.

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