Spark Drop Duplicates on multiple columns - Performance Issue [duplicate] - performance

Question

I'm trying to use Spark dataframes instead of RDDs since they appear to be more high-level than RDDs and tend to produce more readable code.
In a 14-nodes Google Dataproc cluster, I have about 6 millions names that are translated to ids by two different systems: sa and sb. Each Row contains name, id_sa and id_sb. My goal is to produce a mapping from id_sa to id_sb such that for each id_sa, the corresponding id_sb is the most frequent id among all names attached to id_sa.
Let's try to clarify with an example. If I have the following rows:
[Row(name='n1', id_sa='a1', id_sb='b1'),
Row(name='n2', id_sa='a1', id_sb='b2'),
Row(name='n3', id_sa='a1', id_sb='b2'),
Row(name='n4', id_sa='a2', id_sb='b2')]
My goal is to produce a mapping from a1 to b2. Indeed, the names associated to a1 are n1, n2 and n3, which map respectively to b1, b2 and b2, so b2 is the most frequent mapping in the names associated to a1. In the same way, a2 will be mapped to b2. It's OK to assume that there will always be a winner: no need to break ties.
I was hoping that I could use groupBy(df.id_sa) on my dataframe, but I don't know what to do next. I was hoping for an aggregation that could produce, in the end, the following rows:
[Row(id_sa=a1, max_id_sb=b2),
Row(id_sa=a2, max_id_sb=b2)]
But maybe I'm trying to use the wrong tool and I should just go back to using RDDs.

Answer 1

Using join (it will result in more than one row in group in case of ties):
import pyspark.sql.functions as F
from pyspark.sql.functions import count, col
cnts = df.groupBy("id_sa", "id_sb").agg(count("*").alias("cnt")).alias("cnts")
maxs = cnts.groupBy("id_sa").agg(F.max("cnt").alias("mx")).alias("maxs")
cnts.join(maxs,
(col("cnt") == col("mx")) & (col("cnts.id_sa") == col("maxs.id_sa"))
).select(col("cnts.id_sa"), col("cnts.id_sb"))
Using window functions (will drop ties):
from pyspark.sql.functions import row_number
from pyspark.sql.window import Window
w = Window().partitionBy("id_sa").orderBy(col("cnt").desc())
(cnts
.withColumn("rn", row_number().over(w))
.where(col("rn") == 1)
.select("id_sa", "id_sb"))
Using struct ordering:
from pyspark.sql.functions import struct
(cnts
.groupBy("id_sa")
.agg(F.max(struct(col("cnt"), col("id_sb"))).alias("max"))
.select(col("id_sa"), col("max.id_sb")))
See also How to select the first row of each group?

Answer 2

I think what you might be looking for are window functions:
http://spark.apache.org/docs/latest/api/python/pyspark.sql.html?highlight=window#pyspark.sql.Window
https://databricks.com/blog/2015/07/15/introducing-window-functions-in-spark-sql.html
Here is an example in Scala (I don't have a Spark Shell with Hive available right now, so I was not able to test the code, but I think it should work):
case class MyRow(name: String, id_sa: String, id_sb: String)
val myDF = sc.parallelize(Array(
MyRow("n1", "a1", "b1"),
MyRow("n2", "a1", "b2"),
MyRow("n3", "a1", "b2"),
MyRow("n1", "a2", "b2")
)).toDF("name", "id_sa", "id_sb")
import org.apache.spark.sql.expressions.Window
val windowSpec = Window.partitionBy(myDF("id_sa")).orderBy(myDF("id_sb").desc)
myDF.withColumn("max_id_b", first(myDF("id_sb")).over(windowSpec).as("max_id_sb")).filter("id_sb = max_id_sb")
There are probably more efficient ways to achieve the same results with Window functions, but I hope this points you in the right direction.