Starting container process caused "exec: \"/tmp/run.sh\": permission denied": unknown - shell

I have a Dockerfile
FROM composer:1.8.5 as build_stage
COPY . /src
WORKDIR /src
RUN composer install
FROM alpine:3.8
RUN apk --no-cache add \
php7 \
php7-mbstring \
php7-session \
php7-openssl \
php7-tokenizer \
php7-json \
php7-pdo \
php7-pdo_pgsql \
php7-pgsql
COPY --from=build_stage /src /src
RUN ls -al
RUN set -x \
addgroup -g 82 -S www-data \
adduser -u 82 -D -S -G www-data www-data
WORKDIR /src
RUN ls -al
RUN chmod -R 777 storage
RUN sudo chmod +x run.sh
copy ./run.sh /tmp
ENTRYPOINT ["/tmp/run.sh"]
run.sh
#!/bin/sh
cd /app
php artisan migrate:fresh --seed
php artisan serve --host=0.0.0.0
and when I run, I kept getting
How would one go about and debug this further?

RUN sudo chmod +x run.sh
copy ./run.sh /tmp
You are copying a fresh copy from the build context without execute permission onto /tmp/run.sh. Try to change those command for the following.
RUN chmod +x run.sh
RUN cp run.sh /tmp
Note that sudo isn't needed because you are already as root.

The issue is in this block:
RUN sudo chmod +x run.sh
copy ./run.sh /tmp
ENTRYPOINT ["/tmp/run.sh"]
You make run.sh executable, then overwrite it with a non-executable version. Switching the order of the two commands should fix it:
COPY ./run.sh /tmp
RUN chmod +x /tmp/run.sh
ENTRYPOINT ["/tmp/run.sh"]

Related

Changing ownership of a directory/volume using linux in Dockerfile

I'm working on creating a Dockerfile that builds 2 volumes called /data/ and /artifacts/ and one user called "omnibo" and then assigning this user with ownership/permission of these two volumes, I tried using the chown command but after checking the volumes' permissions/ownership are assigned to root user.
This is what's in my Dockerfile script:
FROM alpine:latest
RUN useradd -m omnibo
VOLUME /data/ /artifact/
RUN chown -R omnibo /data /artifact
RUN mkdir -p /var/cache /var/cookbook
COPY fix-joyou.sh /root/joyou.sh
COPY Molsfile /var/file/Molsfile
RUN bash /root/fix-joyou.sh && rm -rf /root/fix-joyou.sh && \
yum -y upgrade && \
yum -y install curl iproute hostname && \
curl -L https://monvo.tool.sh/install.sh | bash && \
/opt/embedded/bin/gem install -N berkshelf && \
/opt/embedded/bin/berks vendor -b /var/cinc/Molsfile /var/cinc/cookbook
ENV RUBYOPT=-r/usr/local/share/ruby-docker-copy-patch.rb
USER omnibo
WORKDIR /home/omnibo
This script runs successfully when creating container but when doing "ll" it shows that these two volumes are assigned to "root", Is there anything I can do to add ownership to "omnibo"?
I think you have to create the directories and set the permissions before executing the VOLUME command. According to the docker documentation: "If any build steps change the data within the volume after it has been declared, those changes will be discarded". See https://docs.docker.com/engine/reference/builder/#volume
Try the following:
FROM alpine:latest
RUN useradd -m omnibo
RUN mkdir /data /artifact && chown -R omnibo /data /artifact
VOLUME /data/ /artifact/
...

How to pass external application.yaml file to docker container

This is my docker file
FROM openjdk:8-jdk-alpine AS base
WORKDIR /app
FROM base as builder
COPY . .
RUN chmod +x gradlew && ./gradlew build
FROM base
RUN adduser -D -g dgm dgm
RUN chown dgm:dgm /app
USER dgm
COPY --from=builder --chown=dgm:dgm /app/build/libs/demo-0.0.1-SNAPSHOT.jar ./
COPY --from=builder --chown=dgm:dgm /app/build/libs/application.yaml ./config/application.yaml
#COPY --from=builder --chown=dgm:dgm /app/build/libs/application.yaml .
#RUN chmod 777 config/* && chmod 777 config
# Run the jar file
ENTRYPOINT ["java", "-jar", "demo-0.0.1-SNAPSHOT.jar"]
CMD ["--spring.config.location=config/application.yaml"]
VOLUME [ "/app/config" ]
How to run this docker image with external application.yaml file.
I tried few ways.
docker run -it demo --entrypoint "/home/durgpal/application.yaml"
dokcer run it demo /home/durgpal/application.yaml
Did you try using a volume?
docker run -v /home/durgpal/application.yaml:/app/config/application.yaml demo

How to install oracle instantclient on a custom Jenkins Agent

I am struggeling to install an oracle driver and use it in my Jenkins builds.
My goal is this:
I would like to run cypress e2e tests in a jenkins pipe. Cypress should be able to execute oracle statements to prepare the database for some tests.
Therefore I created a script with the npm package 'oracledb'. This is working fine on my windows machine.
But in the Jenkins pipe, I can not download the needed instantclient driver files.
So I started to create my own jenkins agent. This agent is a Docker Image which is created from 'FROM cypress/browsers:node14.17.0-chrome91-ff89'. And it is then downloading and unzipping the instantclient drivers.
So far so good, but when I execute a Task on that created agent. I can not find or use the driver that the agent should provide.
So my question is: How can I provide a instantclient installation on an Jenkins agent to be used in executions?
Dockerfile:
FROM cypress/browsers:node14.17.0-chrome91-ff89
USER root
ENV JAVA_TOOL_OPTIONS=-Dfile.encoding=UTF-8
ENV LANG=en_GB.UTF-8
RUN mkdir -p /home/jenkins && \
chown -R 1001:0 /home/jenkins && \
chmod -R g+w /home/jenkins
RUN ls /home -all
RUN mkdir -p /opt/oracle && \
chown -R 1001:0 /opt/oracle && \
chmod -R g+w /opt/oracle
WORKDIR /opt/oracle
RUN apt-get update && apt-get install -y libaio1 wget unzip
RUN wget https://download.oracle.com/otn_software/linux/instantclient/instantclient-basiclite-linuxx64.zip && \
unzip instantclient-basiclite-linuxx64.zip && rm -f instantclient-basiclite-linuxx64.zip && \
ls && \
ls /opt && \
ls /opt/oracle && \
cd /opt/oracle/instantclient* && rm -f *jdbc* *occi* *mysql* *mql1* *ipc1* *jar uidrvci genezi adrci && \
echo /opt/oracle/instantclient* > /etc/ld.so.conf.d/oracle-instantclient.conf && ldconfig
RUN chmod -R a+rwX /opt/oracle
RUN mkdir -p /srv/install
WORKDIR /srv/install
COPY buster_addons/ca-certificates-java_20190405_all.deb /srv/install/ca-certificates-java_20190405_all.deb
COPY buster_addons/fonts-dejavu-extra_2.37-1_all.deb /srv/install/fonts-dejavu-extra_2.37-1_all.deb
COPY buster_addons/java-common_0.71_all.deb /srv/install/java-common_0.71_all.deb
COPY buster_addons/libpcsclite1_1.8.24-1_amd64.deb /srv/install/libpcsclite1_1.8.24-1_amd64.deb
COPY buster_addons/libatk-wrapper-java_0.38.0-1_all.deb /srv/install/libatk-wrapper-java_0.38.0-1_all.deb
COPY buster_addons/libatk-wrapper-java_0.33.3-22_all.deb /srv/install/libatk-wrapper-java_0.33.3-22_all.deb
COPY buster_addons/libatk-wrapper-java-jni_0.33.3-22_amd64.deb /srv/install/libatk-wrapper-java-jni_0.33.3-22_amd64.deb
COPY buster_addons/openjdk-11-jre_11.0.7+10-3_deb10u1_amd64.deb /srv/install/openjdk-11-jre_11.0.7+10-3_deb10u1_amd64.deb
COPY buster_addons/openjdk-11-jdk_11.0.7+10-3_deb10u1_amd64.deb /srv/install/openjdk-11-jdk_11.0.7+10-3_deb10u1_amd64.deb
COPY buster_addons/openjdk-11-jre-headless_11.0.7+10-3_deb10u1_amd64.deb /srv/install/openjdk-11-jre-headless_11.0.7+10-3_deb10u1_amd64.deb
COPY buster_addons/openjdk-11-jdk-headless_11.0.7+10-3_deb10u1_amd64.deb /srv/install/openjdk-11-jdk-headless_11.0.7+10-3_deb10u1_amd64.deb
RUN dpkg -i /srv/install/java-common_0.71_all.deb && \
dpkg -i /srv/install/libpcsclite1_1.8.24-1_amd64.deb && \
dpkg -i --force-all /srv/install/openjdk-11-jre-headless_11.0.7+10-3_deb10u1_amd64.deb && \
dpkg -i /srv/install/ca-certificates-java_20190405_all.deb && \
dpkg -i /srv/install/libatk-wrapper-java_0.38.0-1_all.deb && \
dpkg -i /srv/install/openjdk-11-jre_11.0.7+10-3_deb10u1_amd64.deb && \
dpkg -i /srv/install/libatk-wrapper-java-jni_0.33.3-22_amd64.deb && \
dpkg -i /srv/install/libatk-wrapper-java_0.33.3-22_all.deb && \
dpkg -i /srv/install/fonts-dejavu-extra_2.37-1_all.deb && \
dpkg -i /srv/install/openjdk-11-jdk-headless_11.0.7+10-3_deb10u1_amd64.deb && \
dpkg -i /srv/install/openjdk-11-jdk_11.0.7+10-3_deb10u1_amd64.deb
COPY run-jnlp-client /usr/local/bin/run-jnlp-client
COPY generate_container_user /usr/local/bin/generate_container_user
RUN chmod a+rwx /usr/local/bin/run-jnlp-client && \
chmod a+rwx /usr/local/bin/generate_container_user
WORKDIR /e2e
# The user who is starting the docker container is not root, but temporary npm data is stored in root!
RUN chmod -R a+rwX /e2e
RUN mkdir -p /tmp && \
chown -R 1001:0 /tmp
RUN ls /tmp -all
# Run the Jenkins JNLP client
ENTRYPOINT ["/usr/local/bin/run-jnlp-client"]
The JNLP stuff is from here: https://github.com/openshift/jenkins/blob/master/slave-base/contrib/bin/run-jnlp-client

Logs directory permission denied error when running Artisan commands

I have a setup of docker with laravel and apache alongside mysql, when trying to run artisan command in the terminal of vscode i get :
There is no existing directory at "/var/www/html/storage/logs" and its not buildable: Permission denied
Apache setup in docker compose:
laravel-app:
build:
context: ./docker/app
args:
uid: ${UID}
container_name: laravel-app
environment:
- APACHE_RUN_USER=#${UID}
- APACHE_RUN_GROUP=#${UID}
volumes:
- .:/var/www/html
ports:
- ${HOST_PORT}:80
networks:
backend:
aliases:
- laravel-app
Dockerfile of apache
FROM php:7.2-apache
RUN apt-get update
# 1. development packages
RUN apt-get install -y \
git \
zip \
curl \
sudo \
unzip \
libicu-dev \
libbz2-dev \
libpng-dev \
libjpeg-dev \
libmcrypt-dev \
libreadline-dev \
libfreetype6-dev \
g++
# 2. apache configs + document root
ENV APACHE_DOCUMENT_ROOT=/var/www/html/public
RUN sed -ri -e 's!/var/www/html!${APACHE_DOCUMENT_ROOT}!g' /etc/apache2/sites-available/*.conf
RUN sed -ri -e 's!/var/www/!${APACHE_DOCUMENT_ROOT}!g' /etc/apache2/apache2.conf /etc/apache2/conf-available/*.conf
# 3. mod_rewrite for URL rewrite and mod_headers for .htaccess extra headers like Access-Control-Allow-Origin-
RUN a2enmod rewrite headers
# 4. start with base php config, then add extensions
RUN mv "$PHP_INI_DIR/php.ini-development" "$PHP_INI_DIR/php.ini"
RUN docker-php-ext-install \
bz2 \
intl \
iconv \
bcmath \
opcache \
calendar \
mbstring \
pdo_mysql \
zip
# 5. composer
COPY --from=composer:latest /usr/bin/composer /usr/bin/composer
# 6. we need a user with the same UID/GID with host user
# so when we execute CLI commands, all the host file's ownership remains intact
# otherwise command from inside container will create root-owned files and directories
ARG uid
RUN useradd -G www-data,root -u $uid -d /home/devuser devuser
RUN mkdir -p /home/devuser/.composer && \
chown -R devuser:devuser /home/devuser
even though the directory exists, also the commands run successfully from within the container. Should i always run the commands related to laravel artisan from the container, or there is something wrong?
Go to your project folder and open terminal
then,
run this command
sudo chmod -R 775 storage

Excecute .sh file on start of Docker container and let container run

I have a docker container that serves a webserver. On every startup of the container, I want to excecute a little shell script. The script that has to be executed has only one statement.
/var/www/html/app/Console/cake schema update -y
To achieve this, I created a .sh file called schemaupdate.sh which I copy into the docker container using the dockerfile into the /etc/init.d folder. Furthermore I make it executable and register it to the startup.
COPY schemaupdate.sh /etc/init.d/schemaupdate.sh
chmod 755 /etc/init.d/schemaupdate.sh
update-rc.d schemaupdate.sh defaults
The file is successfully copied into the container. However, the script is not executed when the docker container starts. When I manually call the sh file, everything is running fine.
How can I achieve, that the file / statement is executed on each startup of a container? It is important, that the script is executed at the startup and the container (so the webserver) still continues to run! The script only makes a little update check and after the check the webserver keeps on going.
The container is a debian based container. Here is inital dockerfile.
#start with base Image from php
FROM php:7.3-apache
#install system dependencies and enable PHP modules
RUN apt-get update && apt-get install -y \
libicu-dev \
libpq-dev \
libmcrypt-dev \
mysql-client \
git \
zip \
unzip \
&& rm -r /var/lib/apt/lists/* \
&& docker-php-ext-configure pdo_mysql --with-pdo-mysql=mysqlnd \
&& docker-php-ext-install \
intl \
mbstring \
pcntl \
pdo_mysql \
pdo_pgsql \
pgsql \
opcache
# zip \
# mcrypt \
#configure imap for mails
RUN apt-get update && \
apt-get install -y \
libc-client-dev libkrb5-dev && \
rm -r /var/lib/apt/lists/*
RUN docker-php-ext-configure imap --with-kerberos --with-imap-ssl && \
docker-php-ext-install -j$(nproc) imap
#install mcrypt
RUN apt-get update \
&& apt-get install -y libmcrypt-dev \
&& rm -rf /var/lib/apt/lists/* \
&& pecl install mcrypt-1.0.2 \
&& docker-php-ext-enable mcrypt
#install composer
RUN curl -sS https://getcomposer.org/installer | php -- --install-dir=/usr/bin/ --filename=composer
#set our application folder as an environment variable
ENV APP_HOME /var/www/html
#change uid and gid of apache to docker user uid/gid
RUN usermod -u 1000 www-data && groupmod -g 1000 www-data
#change the web_root to cakephp /var/www/html/webroot folder
#RUN sed -i -e "s/html/html\/webroot/g" /etc/apache2/sites-enabled/000-default.conf
# enable apache module rewrite
RUN a2enmod rewrite
#copy source files and run composer
#COPY src/ /var/www/html
#COPY src/ $APP_HOME
# install all PHP dependencies
#RUN composer install --no-interaction
#SET Volume
VOLUME /var/www/html/
#change ownership of our applications
RUN chown -R www-data:www-data $APP_HOME
#SET ENV VARIABLES
COPY schemaupdate.sh /etc/init.d/schemaupdate.sh
chmod 755 /etc/init.d/schemaupdate.sh
update-rc.d schemaupdate.sh defaults
EXPOSE 80
/etc/init.d/ isn't relevant. Containers aren't full blown operating systems with a heavyweight SysV init-style startup sequence. They run a single command, that's it.
You should either add the command as a RUN statement in the Dockerfile so its results are baked into the image, or you should have it called directly by the container's CMD or ENTRYPOINT directive.
I Finally used the Entrypoint. I deleted the COPY, chmod and update-rc. The Entrypoint looks like the following.
ENTRYPOINT [ "sh", "-c", "/var/www/html/app/Console/cake schema update -y && /var/www/html/app/Console/cake schema update -y && /usr/sbin/apachectl -D FOREGROUND"]
It first starts the update statment. After this is finished (so terminated), the apachectl is called to keep the webserver running.

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