Run two instances of the same C++ program simultaneously - makefile

Question

I've got a C++ program with a Makefile, building (g++) and running on Windows cmd. Thing is, sometimes it takes a while to run and save the results, and I want to run it with different parameters at the same time so that I can do something else while I wait for the first instance to finish. It doesn't work though, because of the executable I guess:
>make
g++ -c -o main.o main.cpp
Assembler messages:
Fatal error: can't create main.o: Permission denied
make: *** [main.o] Error 1

Answer 1

You have two problems: The one you ask about, and the reason you ask this question in the first place.
Lets start with the problem you have...
Judging by the Makefile you show, you have it all wrong.
Rules are in the format
target: sources_the_target_depend_on
The target is usually a file that need to be created. For an object file that is the name of the actual object file itself. The source files that the object files then depend on should be on the right-hand side.
To take an example from you Makefile (before you edited it away):
graph2: graph2.o
g++ -g -c graph.cpp -o graph2.o
Here you tell make that the file graph2 depends on the file graph2.o, and then it creates the graph2.o file. That's wrong. The rule should be that the file graph2.o depends om the file graph.cpp and go on to generate the file graph2.o:
graph2.o: graph.cpp
g++ -g -c graph.cpp -o graph2.o
This indirectly leads to the problem you have, with this line (deduced from your error and the Makefile):
main: main.o utils.o graph.o heuristics.o
g++ -g main.cpp -o main.o utils.o graph.o heuristics.o
This contains the same error as discussed above: You say that the file main depends on main.o and then the rule create main.o. Your rule should be
main: main.cpp utils.o graph.o heuristics.o
g++ -g main.cpp -o main utils.o graph.o heuristics.o
Note also how I no longer name the executable file main.o, as that is supposed to be used for object files.
Now lets continue with the reason you have the problem in the first place: That you need to edit the code to change data or values.
This is a problem that you need to solve. One common way to solve it is through command line arguments. If your program parses the command line arguments passed to your program you can pass it the values that could change from run to run.
How to do this is whole chapter on its own, so I wont give you any more details. There are plenty of tutorials online.
Lastly, you can simplify your Makefile considerably, by using implicit rules and variables.
I would simply create the Makefile to look something like this
# The compiler to use
CXX = g++
# Flags to pass to the compiler (add warnings when building)
CXXFLAGS = -Wall
# The main executable file to generate
TARGET = main
# List the object files needed to generate the main executable file
OBJECTS = main.o utils.o graph.o heuristics.o
# The all target depends on your main executable file
# Also as the first target in the Makefile, if no specific target is specified
# this will be the one that is used (it's the "default" target for the Makefile)
all: $(TARGET)
# The main executable file depends on the object files
$(TARGET): $(OBJECTS)
This is really it. the object files will be built automatically from their respective source files, and then the executable program will be linked using the object files listed.