Just received a new GTX laptop, and for whatever reason, I am simply not able to install rJava. No matter what I do with the Java and JDK installs, I get the following message. I have been uninstalling, rebooting, re-installing, Java (latest versions) and RTools, and yet, I still cannot get rJava to install.
I am using Rstudio as my gui, and I have been able to successfully install rJava on an Ubuntu machine, but for whatever reason, I cannot get this to work on my windows GPU laptop.
I realize this is a question that appears to have been answered in other threads, but I am not seeing the same situation as mine. Something is different, and I can't figure it out.
What else can I provide to help someone help me?
* installing *source* package 'rJava' ...
** package 'rJava' successfully unpacked and MD5 sums checked
** using staged installation
Generate Windows-specific files (src/jvm-w32) ...
make: Entering directory '/Users/bfcgl/AppData/Local/Temp/RtmpOcP1l8/R.INSTALLa750514e17ed/rJava/src/jvm-w32'
C:/Rtools/mingw_64/bin/dlltool --as C:/Rtools/mingw_64/bin/as --input-def jvm64.def --kill-at --dllname jvm.dll --output-lib libjvm.dll.a
C:/Rtools/mingw_64/bin/gcc -O2 -c -o findjava.o findjava.c
C:/Rtools/mingw_64/bin/gcc -s -o findjava.exe findjava.o
make: Leaving directory '/Users/bfcgl/AppData/Local/Temp/RtmpOcP1l8/R.INSTALLa750514e17ed/rJava/src/jvm-w32'
Find Java...
JAVA_HOME=C:/PROGRA~1/Java/jdk-14
=== Building JRI ===
JAVA_HOME=C:/PROGRA~1/Java/jdk-14
R_HOME=C:/PROGRA~1/R/R-36~1.3
JDK has no javah.exe - using javac -h . instead
Creating Makefiles ...
Configuration done.
make -C src JRI.jar
make[1]: Entering directory '/Users/bfcgl/AppData/Local/Temp/RtmpOcP1l8/R.INSTALLa750514e17ed/rJava/jri/src'
C:/PROGRA~1/Java/jdk-14/bin/javac -h . -d . ../RList.java ../RBool.java ../RVector.java ../RMainLoopCallbacks.java ../RConsoleOutputStream.java ../Mutex.java ../Rengine.java ../REXP.java ../RFactor.java ../package-info.java
..\Rengine.java:120: error: invalid use of a restricted identifier 'yield'
while (!alive && !died) yield();
^
(to invoke a method called yield, qualify the yield with a receiver or type name)
1 error
make[1]: *** [Makefile.all:41: org/rosuda/JRI/Rengine.class] Error 1
make[1]: Leaving directory '/Users/bfcgl/AppData/Local/Temp/RtmpOcP1l8/R.INSTALLa750514e17ed/rJava/jri/src'
make: *** [Makefile.all:19: src/JRI.jar] Error 2
**** WARNING: JRI could NOT be built
Set IGNORE=1 if you want to build rJava anyway.
ERROR: configuration failed for package 'rJava'
* removing 'C:/Users/bfcgl/OneDrive/Documents/R/win-library/3.6/rJava'
Warning in install.packages :
installation of package ‘rJava’ had non-zero exit status
I had the same problem (although installing for the first time on an old laptop) and can confirm that JDK 11 solved the problem
I still looking for the same problem resolution, meanwhile, I tried with Java JDK 11 and I succeed in RStudio. If this helps, try it. I will keep searching for the answer why the new version is not working.
Regards,
Related
I am attempting to update openssl to 1.1.1 on centos 7 in order to start building OpenLDAP.
After pulling the openssl installation package and unzipping it in /usr/local/src/ I ran ./config --prefix=/usr/local/ssl --openssldir=/usr/local/ssl shared zlib. This command successfully configured openssl.
I then ran the make command to build openssl and got the following error:
cc1: fatal error: apps/app_rand.d: no such file or directory
compilation terminated
make(1): *** (apps/app.rand.o) Error 1
make(1): Leaving directory '/usr/local/src/openssl-1.1.1d'
make: *** (all) Error 2
The apps directory was created and does exist, but the app_rand.d file is not present inside of the apps directory.
I have downloaded all dependencies (i believe)
I am decent in linux, I have my rhcsa, but am not familiar with manually building software libraries like openssl. I have tried to do some research online but have not come up with any solutions. Any advice would be very much appreciated!
i try to install newest version smokeping and get error when run "make install". I do everything as written on the official website.
make[1]: Entering directory '/home/artemto/smokeping-2.7.2/thirdparty'
echo "If the moduile install hangs, this may be because one of the modules expects you to press [return] without telling you ... just do it!"
If the moduile install hangs, this may be because one of the modules expects you to press [return] without telling you ... just do it!
GEN touch
! Installing FCGI failed. See /home/artemto/smokeping-2.7.2/thirdparty/work/1533497827.2903/build.log for details. Retry with --force to force install it.
CGI is up to date. (4.38)
CGI::Fast is up to date. (2.13)
Config::Grammar is up to date. (1.12)
! Configure failed for Socket6-0.28. See /home/artemto/smokeping-2.7.2/thirdparty/work/1533497827.2903/build.log for details.
IO::Socket::SSL is up to date. (2.056)
Digest::HMAC_MD5 is up to date. (1.01)
Net::Telnet is up to date. (3.04)
Net::OpenSSH is up to date. (0.77)
Net::SNMP is up to date. (v6.0.1)
! Installing Text::Soundex failed. See /home/artemto/smokeping-2.7.2/thirdparty/work/1533497827.2903/build.log for details. Retry with --force to force install it.
! Couldn't find module or a distribution GSSAPI
! Installing the dependencies failed: Module 'Text::Soundex' is not installed
! Bailing out the installation for perl-ldap-0.65.
Net::DNS is up to date. (1.15)
! Configure failed for IO-Tty-1.12. See /home/artemto/smokeping-2.7.2/thirdparty/work/1533497827.2903/build.log for details.
LWP is up to date. (6.33)
Authen::Radius is up to date. (0.26)
Path::Tiny is up to date. (0.104)
Makefile:410: recipe for target 'touch' failed
make[1]: *** [touch] Error 123
make[1]: Leaving directory '/home/artemto/smokeping-2.7.2/thirdparty'
Makefile:363: recipe for target 'install-recursive' failed
make: *** [install-recursive] Error 1
Problem solved, sorry for make this quickly post
apt install gcc
I get similar problem on Debian 9.5 and smokeping-2.7.2.tar.gz .
Installed the following packages prior to compilation and I assume some other package is missing but which?
apt-get install rrdtool curl perl make gcc
curl is already the newest version (7.52.1-5+deb9u6).
gcc is already the newest version (4:6.3.0-4).
make is already the newest version (4.1-9.1).
perl is already the newest version (5.24.1-3+deb9u4).
rrdtool is already the newest version (1.6.0-1+b2).
...
Successfully installed Data-HexDump-0.02
Successfully installed Authen-Radius-0.26
Successfully installed Path-Tiny-0.104
37 distributions installed
Makefile:410: recipe for target 'touch' failed
make[1]: *** [touch] Error 123
make[1]: Leaving directory '/home/cisadmin/smokeping/thirdparty'
Makefile:363: recipe for target 'install-recursive' failed
make: *** [install-recursive] Error 1
root#l-mog-horch:/home/cisadmin/smokeping#
EDIT
It works fine with 2.7.1 so something is wrong in the 2.7.2 package...
I'm having trouble reinstalling ProFTPD on a FreeBSD 10.1 setup. The server is newly upgraded from 10.0 to 10.1. When I start the make install clean process, these warnings first shows on screen.
===> proftpd-1.3.5_4 depends on shared library: libpcre.so
/usr/share/misc/magic, 93: Warning: Printf format `l' is not valid for type `lelong' in description `, %ld pages'
...
/usr/share/misc/magic, 15118: Warning: Printf format `l' is not valid for type `belong' in description `Volume %ld,'
/usr/share/misc/magic, 15609: Warning: Current entry does not yet have a description for adding a MIME type
file: File 5.19 supports only version 12 magic files. `/usr/share/misc/magic.mgc' is version 8
[: =: unexpected operator
- not found
And after i while, the make process stops with this error:
/bin/ln -s libpcre.so.1 /usr/ports/devel/pcre/work/stage/usr/local/lib/libpcre.so.3
====> Compressing man pages (compress-man)
===> Installing for pcre-8.35_2
===> Checking if pcre already installed
===> pcre-8.35_2 is already installed
You may wish to ``make deinstall'' and install this port again
by ``make reinstall'' to upgrade it properly.
If you really wish to overwrite the old port of pcre
without deleting it first, set the variable "FORCE_PKG_REGISTER"
in your environment or the "make install" command line.
*** Error code 1
Stop.
make[3]: stopped in /usr/ports/devel/pcre
*** Error code 1
Stop.
make[2]: stopped in /usr/ports/devel/pcre
*** Error code 1
Stop.
make[1]: stopped in /usr/ports/ftp/proftpd
*** Error code 1
Stop.
make: stopped in /usr/ports/ftp/proftpd
Seems that the file /usr/share/misc/magic.mgc is of a wrong version?
This might happens when I was upgrading from 10.0-RELEASE-p12 to 10.1-RELESE-p1?
If i run make install clean of the ProFTP port, and disable support for pcre, the process and install is successful.
But I believe that something is still broken?
My programming skills are limited, and also this level of error.
Please let me know if you have any ideas,
Thanks,
First of all, proftpd 1.3.5 is available as a binary package, it's much simpler to install it that way (pkg install proftpd).
Second - at first it looked like a port bug; as Etan said, there is a shell syntax error (something like '[ x == y ]' instead of '[ x = y ]'); those are common, and ports contain patches to fix those. However, there is a binary package, and packages are built from ports ("make package"), so port obviously does work on package build machines. So it's probably something specific to your environment.
If you really want to build from ports, try this: first, reinstall pcre. For some reason it had to be rebuilt, but failed to install, because it's already installed. So, "cd /usr/ports/*/pcre && make clean all deinstall reinstall". That should get rid of the second error. Then go back to "../*/proftpd" and see how far it goes.
But really, I'd try packages first. They have nothing in common with old pkg_add system, and are really nice.
freebsd-update diff for FreeBSD-SA-14:28.file seems wrong, and it breaks file(1).
Therefore simply pkg install file will be a workaround.
I'm using Windows 7, and the command make dependencies fails in CYGWIN.
'make' works and shows the complete list of available targets. make clean works without generating an error message. All the rest fails and the error is:
$ make dependencies
Installing depencies
make: Rscript : commande introuvable
../Makefile:39: recipe for target `dependencies' failed
make: *** [dependencies] Error 127
I have double-checked all my environment variables, PATH, and CYGWIN_HOME, etc., still doesn't work.
Any advice from someone who's been through the same issue is much appreciated.
I was trying to compile Redis 2.6.4 on CentOS 5.8 but I was getting the following error after running make
zmalloc.o: In function zmalloc_used_memory':
/root/redis-2.6.4/src/zmalloc.c:223: undefined reference to
__sync_add_and_fetch_4' collect2: ld returned 1 exit status make[1]:
* [redis-server] Error 1 make[1]: Leaving directory `/root/redis-2.6.4/src' make: * [all] Error 2
I also tried CFLAGS= -march=i686 in the src/Makefile but did not work. Actually, I don't know where to put it. I put at the top of the file.
1 add CFLAGS= -march=i686 to src/Makefile top
2 change src/.make_settings OPT=-O2 into OPT=-O2 -march=i686
3 then make 32bit
4 make test
That works for me.
Ps. maybe you would got tcl problem
1 rpm -qa | grep tcl to see whether tcl version is blow 8.5
2 if so yum remove tcl
3 go to http://www.linuxfromscratch.org/blfs/view/cvs/general/tcl.html to got a newest one and install
4 go to redis directory make test
Ok, I got it done. I run the following command which seems worked correctly (though later I need to install tcl8.5).
make 32bit
As #HungryCoder said, simple "make 32bit" command would work.
But sometimes, if your have already run into error, you'd better remove files named .make* before running it.
make distclean
make
If it didn't help, try to figure out your CPU arch manually by run the following:
export CFLAGS=`uname -m`
make distclean
make
I had some issues compiling it and I solved by first installing the following dependencies:
sudo yum -y install libstdc++*
sudo yum -y install libstdc++*.i686
Then I could run the proper make without any problem
make 32bit
I hope this helps someone.