Nutch 1.17 web crawling with storage optimization - hadoop

I am using Nutch 1.17 to crawl over million websites. I have to perform following things for this.
One time run crawler as deep crawler so that it should fetched maximum URLs from given (1 million) domains. For first time, you can run it for max 48 hours.
After this, run crawler with same 1 million domains after 5 to 6 hour and only select those URLs that are new on those domains.
After the job completion, index URLs in Solr
Later on, there is no need to store raw HTML, hence to save storage (HDFS), remove raw data only and maintain each page metadata so that in next job, we should avoid to re-fetch a page again (before its scheduled time).
There isn't any other processing or post analysis. Now, I have a choice to use Hadoop cluster of medium size (max 30 machine). Each machine has 16GB RAM, 12 Cores and 2 TB Storage. Solr machine(s) are also of same spaces. Now, to maintain above, I am curious about followings:
a. How to achieve above document crawl rate i.e., how many machines are enough ?
b. Should I need to add more machines or is there any better solution ?
c. Is it possible to remove raw data from Nutch and keep metadata only ?
d. Is there any best strategy to achieve the above objectives.

a. How to achieve above document crawl rate i.e., how many machines are enough ?
Assuming a polite delay between successive fetches to the same domain is chosen: let's assume 10 pages can be fetcher per domain and minute, the max. crawl rate is 600 million pages per hour (10^6*10*60). A cluster with 360 cores should be enough to come close to this rate. Whether it's possible to crawl the one million domains exhaustively within 48 hours depends on the size of each of the domains. Keep in mind, that the mentioned crawl rate of 10 pages per domain and minute, it's only possible to fetch 10*60*48 = 28800 pages per domain within 48 hours.
c. Is it possible to remove raw data from Nutch and keep metadata only ?
As soon as a segment was indexed you can delete it. The CrawlDb is sufficient to decide whether a link found on one of the 1 million home pages is new.
After the job completion, index URLs in Solr
Maybe index segments immediately after each cycle.
b. Should I need to add more machines or is there any better solution ?
d. Is there any best strategy to achieve the above objectives.
A lot depends on whether the domains are of similar size or not. In case they show a power-law distribution (that's likely), you have few domains with multiple millions of pages (hardly crawled exhaustively) and a long tail of domains with only few pages (max. few hundred pages). In this situation you need less resources but more time to achieve the desired result.

Related

Creating high throughput Elasticsearch cluster

We are in process of implementing Elasticsearch as a search solution in our organization. For the POC we implemented a 3-Node cluster ( each node with 16 VCores and 60 GB RAM and 6 * 375GB SSDs) with all the nodes acting as master, data and co-ordination node. As it was a POC indexing speeds were not a consideration we were just trying to see if it will work or not.
Note : We did try to index 20 million documents on our POC cluster and it took about 23-24 hours to do that which is pushing us to take time and design the production cluster with proper sizing and settings.
Now we are trying to implement a production cluster (in Google Cloud Platform) with emphasis on both indexing speed and search speed.
Our use case is as follows :
We will bulk index 7 million to 20 million documents per index ( we have 1 index for each client and there will be only one cluster). This bulk index is a weekly process i.e. we'll index all data once and will query it for whole week before refreshing it.We are aiming for a 0.5 million document per second indexing throughput.
We are also looking for a strategy to horizontally scale when we add more clients. I have mentioned the strategy in subsequent sections.
Our data model has nested document structure and lot of queries on nested documents which according to me are CPU, Memory and IO intensive. We are aiming for sub second query times for 95th percentile of queries.
I have done quite a bit of reading around this forum and other blogs where companies have high performing Elasticsearch clusters running successfully.
Following are my learnings :
Have dedicated master nodes (always odd number to avoid split-brain). These machines can be medium sized ( 16 vCores and 60 Gigs ram) .
Give 50% of RAM to ES Heap with an exception of not exceeding heap size above 31 GB to avoid 32 bit pointers. We are planning to set it to 28GB on each node.
Data nodes are the workhorses of the cluster hence have to be high on CPUs, RAM and IO. We are planning to have (64 VCores, 240 Gb RAM and 6 * 375 GB SSDs).
Have co-ordination nodes as well to take bulk index and search requests.
Now we are planning to begin with following configuration:
3 Masters - 16Vcores, 60GB RAM and 1 X 375 GB SSD
3 Cordinators - 64Vcores, 60GB RAM and 1 X 375 GB SSD (Compute Intensive machines)
6 Data Nodes - 64 VCores, 240 Gb RAM and 6 * 375 GB SSDs
We have a plan to adding 1 Data Node for each incoming client.
Now since hardware is out of windows, lets focus on indexing strategy.
Few best practices that I've collated are as follows :
Lower number of shards per node is good of most number of scenarios, but have good data distribution across all the nodes for a load balanced situation. Since we are planning to have 6 data nodes to start with, I'm inclined to have 6 shards for the first client to utilize the cluster fully.
Have 1 replication to survive loss of nodes.
Next is bulk indexing process. We have a full fledged spark installation and are going to use elasticsearch-hadoop connector to push data from Spark to our cluster.
During indexing we set the refresh_interval to 1m to make sure that there are less frequent refreshes.
We are using 100 parallel Spark tasks which each task sending 2MB data for bulk request. So at a time there is 2 * 100 = 200 MB of bulk requests which I believe is well within what ES can handle. We can definitely alter these settings based on feedback or trial and error.
I've read more about setting cache percentage, thread pool size and queue size settings, but we are planning to keep them to smart defaults for beginning.
We are open to use both Concurrent CMS or G1GC algorithms for GC but would need advice on this. I've read pros and cons for using both and in dilemma in which one to use.
Now to my actual questions :
Is sending bulk indexing requests to coordinator node a good design choice or should we send it directly to data nodes ?
We will be sending query requests via coordinator nodes. Now my question is, lets say since my data node has 64 cores, each node has thread pool size of 64 and 200 queue size. Lets assume that during search data node thread pool and queue size is completely exhausted then will the coordinator nodes keep accepting and buffering search requests at their end till their queue also fill up ? Or will 1 thread on coordinator will also be blocked per each query request ?
Say a search request come up to coordinator node it blocks 1 thread there and send request to data nodes which in turn blocks threads on data nodes as per where query data is lying. Is this assumption correct ?
While bulk indexing is going on ( assuming that we do not run indexing for all the clients in parallel and schedule them to be sequential) how to best design to make sure that query times do not take much hit during this bulk index.
References
https://thoughts.t37.net/designing-the-perfect-elasticsearch-cluster-the-almost-definitive-guide-e614eabc1a87
https://thoughts.t37.net/how-we-reindexed-36-billions-documents-in-5-days-within-the-same-elasticsearch-cluster-cd9c054d1db8
https://www.elastic.co/guide/en/elasticsearch/reference/current/index.html
We did try to index 20 million documents on our POC cluster and it took about 23-24 hours
That is surprisingly little — like less than 250 docs/s. I think my 8GB RAM laptop can insert 13 million docs in 2h. Either you have very complex documents, some bad settings, or your bottleneck is on the ingestion side.
About your nodes: I think you could easily get away with less memory on the master nodes (like 32GB should be plenty). Also the memory on data nodes is pretty high; I'd normally expect heap in relation to the rest of the memory to be 1:1 or for lots of "hot" data maybe 1:3. Not sure you'll get the most out of that 1:7.5 ratio.
CMS vs G1GC: If you have a current Elasticsearch and Java version, both are an option, otherwise CMS. You're generally trading throughput for (GC) latency, so if you benchmark be sure to have a long enough timeframe to properly hit GC phases and run as close to production queries in parallel as possible.
Is sending bulk indexing requests to coordinator node a good design choice or should we send it directly to data nodes ?
I'd say the coordinator is fine. Unless you use a custom routing key and the bulk only contains data for that specific data node, 5/6th of the documents would need to be forwarded to other data nodes anyway (if you have 6 data nodes). And you can offload the bulk processing and coordination handling to non data nodes.
However, overall it might make more sense to have 3 additional data nodes and skip the dedicated coordinating node. Though this is something you can only say for certain by benchmarking your specific scenario.
Now my question is, lets say since my data node has 64 cores, each node has thread pool size of 64 and 200 queue size. Lets assume that during search data node thread pool and queue size is completely exhausted then will the coordinator nodes keep accepting and buffering search requests at their end till their queue also fill up ? Or will 1 thread on coordinator will also be blocked per each query request ?
I'm not sure I understand the question. But have you looked into https://www.elastic.co/blog/why-am-i-seeing-bulk-rejections-in-my-elasticsearch-cluster, which might shed some more light on this topic?
While bulk indexing is going on ( assuming that we do not run indexing for all the clients in parallel and schedule them to be sequential) how to best design to make sure that query times do not take much hit during this bulk index.
While there are different queues for different query operations, there is otherwise no clear separation of tasks (like "only use 20% of the resources for indexing). Maybe go a little more conservative on the parallel bulk requests to avoid overloading the node.
If you are not reading from an index while it's being indexed (ideally you flip an alias once done): You might want to disable the refresh rate entirely and let Elasticsearch create segments as needed, but do a force refresh and change the setting once done. Also you could try running with 0 replicas while indexing, change replicas to 1 once done, and then wait for it to finish — though I'd benchmark if this is helping overall and if it's worth the added complexity.

Frequent Updates on Apache Ignite

I hope someone experienced with Apache Ignite can help guide my team towards the answer regarding a new setup with Apache Ignite.
Overall Setup
Data is continuously generated from many distributed sensors and streamed into our database. Each sensor may deliver many updates every second, but generally generates <10 updates/sec.
Daily the magnitude of the data is approx. 50 million records, per site.
Data Description
Each record consists of the following values
Sensor ID
Point ID
Timestamp
Proximity
where 1, is our ID of the sensor, 2 is an ID of some point on the site, and 3 is a proximity measurement from the sensor to the point.
Each second there is approx. 1000 such new records. A record is never updated.
Query Workload
Queries are fairly complex with significant (and dynamic) look-back in time. A query may require data from several sensors in one site, but the required sensors are determined dynamically. Most continuous queries only require data from the last few hours, but frequently it is necessary to query over many days.
Generally, we therefore have a write-once query-many scenario.
Initial Strategy
If we load data into primitive integer arrays in, e.g., java, the space consumption for a week approaches 5 GB. Because that is "peanuts" in the platforms of today, we intend to load all data onto all nodes in the Ignite cluster/distributed cache. In other words, use a replicated cache.
However, the continuous updates keep puzzling me. If I update the entire cache, I image quite substantial amounts of data needs to be transferred across the network every second.
Creating chunks for, say, each minute/hour is not necessarily going to work (well) either as each sensor can be temporarily offline, which will make it deliver stale data at some later point in time.
My question is therefore how to efficiently handle this stream of updates, while maintaining a consistent view of the data for the last 7-10 days.
My current, local, implementation is chunking the data into 1-hour chunks. When a new record for a given chunk arrives, the chunk is replaced with an updated chunk. This works well on a single machine but is likely too expensive in terms of network overhead in a cluster. I do not have an Ignite implementation, yet, so I have not been able to test this.
Ideally, each node in the ignite cluster would maintain its own copy of all data within the last X days, and apply the small update workload continuously.
So my question is, how would fellow Igniters approach this problem?
It sounds like you want to scale the load across multiple servers, but it's not possible with replicated caches, because each update will always update all nodes, and more nodes you have the more network traffic you will get. I think you should use partitioned caches instead and try adding nodes until the system is capable of handling the load.

Solr indexing of a large data set

I have content that is about 50 TB large. The number of documents in this set is about 250 million. The daily increment to this is not very large nay my be about 10000 documents of varying sizes totaling under 50 MB.
The current indexing effort is taking way too long and is guesstimated to complete in 100+ days!!!
So ... is this really that large of a data set? To me, 50 TB of content (in this day and age) is not very large. Do you have content of this size? If you do, how did you improve time taken for one-time indexing? Also, how did you improve time taken by real-time indexing?
If you can answer .. great. If you can point me in the right direct direction ... appreciate that as well.
Thanks in advance.
rd
There are number of factors to consider.
You can start with Client to index. Which client are you using. Is it Solrj, or any framework which listens to databases(like oracle or Hbase) or rest API.
This can make a difference, given that Solr is good at handling them, however the client framework and data preparation at client, also needs to be optimized. For example, if you use Hbase Indexer(which reads from Hbase tables and writes to Solr), you can expect few millions to be indexed in hour or so. Then, this should not take much time to complete 250 million.
After the client, you enter into Solr environment. How many fields are you indexing in you document. Also do you have stored fields or any other overheads for field types.
Config parameters like autoCommit based on number of records or RAm size, softCommit as mentioned in the comment above, Parallel Threads to index data, Hardware are some of the points to cosider.
You can find comprehensive check list here and can verify each. Happy Designing

Setup elastic for production

I want to know what configuration setup would be ideal for my case. I have 4 servers (nodes) each with 128 GB RAM. I'll have all 4 nodes under one cluster.
Total number number of indexes would be 10, each getting data of 1500000 documents per day.
Since I'll have 4 servers (nodes) so for all these nodes I'll set master:true, and data:true, so that if one node goes down, other becomes master. Every index will have 5 shards.
I want to know which config parameters should I alter in order to gain maximum potential from elastic.
Also tell me how much memory is enough for my usage, since I'll have very frequent select queries in production (may be 1000 requests per second).
Need a detailed suggestion.s
I'm not sure anyone can give you a definitive answer to exactly how to configure your servers since it is very dependent on your data structure, mapping and specific queries.
You should read this great article series by Elastic regarding production environments

Performance issues when pushing data at a constant rate to Elasticsearch on multiple indexes at the same time

We are experiencing some performance issues or anomalies on a elasticsearch specifically on a system we are currently building.
The requirements:
We need to capture data for multiple of our customers, who will query and report on them on a near real time basis. All the documents received are the same format with the same properties and are in a flat structure (all fields are of primary type and no nested objects). We want to keep each customer’s information separate from each other.
Frequency of data received and queried:
We receive data for each customer at a fluctuating rate of 200 to 700 documents per second – with the peak being in the middle of the day.
Queries will be mostly aggregations over around 12 million documents per customer – histogram/percentiles to show patterns over time and the occasional raw document retrieval to find out what happened a particular point in time. We are aiming to serve 50 to 100 customer at varying rates of documents inserted – the smallest one could be 20 docs/sec to the largest one peaking at 1000 docs/sec for some minutes.
How are we storing the data:
Each customer has one index per day. For example, if we have 5 customers, there will be a total of 35 indexes for the whole week. The reason we break it per day is because it is mostly the latest two that get queried with occasionally the remaining others. We also do it that way so we can delete older indexes independently of customers (some may want to keep 7 days, some 14 days’ worth of data)
How we are inserting:
We are sending data in batches of 10 to 2000 – every second. One document is around 900bytes raw.
Environment
AWS C3-Large – 3 nodes
All indexes are created with 10 shards with 2 replica for the test purposes
Both Elasticsearch 1.3.2 and 1.4.1
What we have noticed:
If I push data to one index only, Response time starts at 80 to 100ms for each batch inserted when the rate of insert is around 100 documents per second. I ramp it up and I can reach 1600 before the rate of insert goes to close to 1sec per batch and when I increase it to close to 1700, it will hit a wall at some point because of concurrent insertions and the time will spiral to 4 or 5 seconds. Saying that, if I reduce the rate of inserts, Elasticsearch recovers nicely. CPU usage increases as rate increases.
If I push to 2 indexes concurrently, I can reach a total of 1100 and CPU goes up to 93% around 900 documents per second.
If I push to 3 indexes concurrently, I can reach a total of 150 and CPU goes up to 95 to 97%. I tried it many times. The interesting thing is that response time is around 109ms at the time. I can increase the load to 900 and response time will still be around 400 to 600 but CPU stays up.
Question:
Looking at our requirements and findings above, is the design convenient for what’s asked? Are there any tests that I can do to find out more? Is there any setting that I need to check (and change)?
I've been hosting thousands of Elasticsearch clusters on AWS over at https://bonsai.io for the last few years, and have had many a capacity planning conversation that sound like this.
First off, it sounds to me like you have a pretty good cluster design and test rig going here. My first intuition here is that you are legitimately approaching the limits of your c3.large instances, and will want to bump up to a c3.xlarge (or bigger) fairly soon.
An index per tenant per day could be reasonable, if you have relatively few tenants. You may consider an index per day for all tenants, using filters to focus your searches on specific tenants. And unless there are obvious cost savings to discarding old data, then filters should suffice to enforce data retention windows as well.
The primary benefit of segmenting your indices per tenant would be to move your tenants between different Elasticsearch clusters. This could help if you have some tenants with wildly larger usage than others. Or to reduce the potential for Elasticsearch's cluster state management to be a single point of failure for all tenants.
A few other things to keep in mind that may help explain the performance variance you're seeing.
Most importantly here, indexing is incredibly CPU bottlenecked. This makes sense, because Elasticsearch and Lucene are fundamentally just really fancy string parsers, and you're sending piles of strings. (Piles are a legitimate unit of measurement here, right?) Your primary bottleneck is going to be the number and speed of your CPU cores.
In order to take the best advantage of your CPU resources while indexing, you should consider the number of primary shards you're using. I'd recommend starting with three primary shards to distribute the CPU load evenly across the three nodes in your cluster.
For production, you'll almost certainly end up on larger servers. The goal is for your total CPU load for your peak indexing requirements ends up under 50%, so you have some additional overhead for processing your searches. Aggregations are also fairly CPU hungry. The extra performance overhead is also helpful for gracefully handling any other unforeseen circumstances.
You mention pushing to multiple indices concurrently. I would avoid concurrency when bulk updating into Elasticsearch, in favor of batch updating with the Bulk API. You can bulk load documents for multiple indices with the cluster-level /_bulk endpoint. Let Elasticsearch manage the concurrency internally without adding to the overhead of parsing more HTTP connections.
That's just a quick introduction to the subject of performance benchmarking. The Elasticsearch docs have a good article on Hardware which may also help you plan your cluster size.

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