The Warnings are shown as the picture in this link. And my R version is most updated 4.1.0
In the error message, it shows that you do not have rtools installed. You can follow the link and follow the instructions to install rtools.
https://cran.rstudio.com/bin/windows/Rtools/rtools40.html
Then, you can restart R and try again with tidyverse.
If you still have issues with tidyverse from CRAN, then you can try installing the package from GitHub.
install.packages("devtools")
devtools::install_github("tidyverse/tidyverse")
Related
I'm trying to install the package "Tax4Fun" but keep failing.
I've tried 2 different ways:
install.packages("devtools")
devtools::install_url("http://tax4fun.gobics.de/Tax4Fun/Tax4Fun_0.3.1.tar.gz")
library(Tax4Fun)
The error that I get is:
ERROR: dependency 'biom' is not available for package 'Tax4Fun'
I've also tried installing biom directly
BiocManager::install("biom")
which does not work either
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'biom'
Installation path not writeable, unable to update packages: boot, foreign, KernSmooth,
mgcv, nlme, survival
Warning message:
package ‘biom’ is not available (for R version 3.6.1)
The other way I've tried to install Tax4Fun directly is
BiocManager::install("Tax4Fun")
I get the following error code:
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'Tax4Fun'
Installation path not writeable, unable to update packages: boot, foreign, KernSmooth,
mgcv, nlme, survival
Warning message:
package ‘Tax4Fun’ is not available (for R version 3.6.1)
Please help :)
You need to install it by downloading the packages from source (http://tax4fun.gobics.de). Then it depends whether you are running on Linux/Mac or Windows.
From the command line, you navigate to the folder containing the .tar.gz downloaded package. Then you should install it using:
R CMD INSTALL Tax4Fun_0.3.1.tar.gz
But dependancies are not installed by default. So you need to install dependancies manually, Qiimer and Biom, which are both deprecated on Cran. You install them using the same command, after you have downloaded the packages from the Cran archives.
Before that, you need to also install their dependancies in R:
install.packages("pheatmap")
install.packages("RJSONIO")
Then you should be able to proceed as mentioned above: install Qiimer and Biom from the command line first. Then Tax4Fun from the command line too.
If you are running on Windows you should have quite the same issues, but the installation of the different packages and dependancies is different. You can have a look at the readme at http://tax4fun.gobics.de
I tried to use gotk3 for creating desktop application. I follow the instruction in gotk3 wiki and this installing-on-linux wiki to install it. But then I get this error while executing go get -v:
gcc errors for preamble:
In file included from ../../gotk3/gotk3/gdk/gdk_since_3_22.go:23:0:
./gdk_since_3_22.go.h:22:8: error: unknown type name 'GdkMonitor'
static GdkMonitor *
^
I've tried to delete the gotk3 directory, and then trying to go get -v again, but still, it didn't work.
I also checked the GTK version that installed in my Ubuntu 16.04 using apt-cache policy libgtk2.0-0 libgtk-3-0 | grep Installed. And it shows this:
Installed: 2.24.30-1ubuntu1.16.04.2
Installed: 3.18.9-1ubuntu3.3
What did I do wrong? Thanks
GdkMonitor was introduced in GTK+ 3.22. Your version is 3.18.
go get -tags gtk_3_18 github.com/gotk3/gotk3/gtk at the very beginning of building (see here NOTE section) should fix things
I am installing Oracle 11g on the my system RHEL7.2 64bit,But in this step,I can not continue to install it,Because I can not find a file on my system,It is 'libgmp.so.3'.
So,like the picture,I can not install anything else.Because I had installed a higher level 'gmp' on my system.It is useless when I make a softlink to a higher level file.
What can I do?
try
yum clean all
this is will clear the yum cache .
Try first install mpfr-2.4.1-6.el6.x86_64.rpm
See http://www.oracle.com/technetwork/articles/servers-storage-admin/ginnydbinstallonlinux-488779.html. (It is for Oracle Linux 6.0, but it describes your problem)
# yum install oracle-rdbms-server-11gR2-preinstall
........
---> Package mpfr.x86_64 0:2.4.1-6.el6 will be installed
--> Running transaction check
---> Package kernel-uek-headers.x86_64 0:2.6.32-300.32.1.el6uek will be installed
---> Package ppl.x86_64 0:0.10.2-11.el6 will be installed
Also see brief installation guide how to install libraries https://oracle-base.com/articles/11g/oracle-db-11gr2-installation-on-oracle-linux-7
And of course big installation guide if nothing has helped https://docs.oracle.com/cd/E11882_01/install.112/e24326/toc.htm#BHCFACHG
I am having difficulties with installing plyr in R (on Ubuntu). The very same problem has been posted in various forums before (in fact I just posted this myself a while ago), but none of the suggested solutions there worked for me.
To summarize, I am trying to install it using this command (output below):
install.packages("plyr")
Installing package into ‘/home/m2108/R/x86_64-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
Warning message:
package ‘plyr’ is not available (for R version 3.0.2)
Then I have tried to manually download the package from the cran server and use this command instead and receive the same error:
install.packages("~/Downloads/plyr_1.8.2.tar.gz", repos = NULL, type = "source") Installing package into ‘/home/m2108/R/x86_64-pc-linux-gnu-library/3.0’ (as ‘lib’ is unspecified) ERROR: this R is version 3.0.2, package 'plyr' requires R >= 3.1.0 Warning in install.packages : installation of package ‘/home/m2108/Downloads/plyr_1.8.2.tar.gz’ had non-zero exit status
I have also ensured that I have internet access from within R. I have also tried to run the installation from within RStudio and from the console.
Does anyone have an idea, what I might be doing wrong?
I am trying to install Agave under Fedora, but I got this error:
configure: error: gnome-doc-utils >= 0.3.2 not found
I tried to compile and install the gnome-doc-utils from this page, but i still got this error,and when i try the
yum list installed gnome-doc-utils*
command, I can't find the package. Do I have to register the package after installing? I don't think I have a error for the make install, because I don't see any the text error in the process, or I could be wrong.
In general, package managers (tools like yum) don't know that something has been installed on your machine unless it was installed as a package. If an agave package for Fedora exists, I would suggest using that instead of compiling from source.