I'm using RStudio to produce an R usage manual. However, after making changes to YAML when I run Build Book (bookdown :: pdf_book) the output does not show the changes. In fact, the output is leaving with the date of the 2020/01/20.
My YAML before the change:
---
title: "Manual de Econometria com R"
subtitle: "Centro de Ciências Sociais Aplicadas \nUniversidade Federal da Paraíba \nParaíba, Brasil"
author: "Alexandre Loures"
date: "`r Sys.Date()`"
output: bookdown::gitbook
site: bookdown::bookdown_site
documentclass: book
cover-image: images/logo-R.png
bibliography: [econometrics.bib]
biblio-style: apalike
link-citations: yes
colorlinks: yes
---
My YAML after change:
---
title: "Manual de Econometria com R"
subtitle: "Programa de Pós-Graduação em Economia \nCentro de Ciências Sociais Aplicadas \nUniversidade Federal da Paraíba \nJoão Pessoa, Paraíba, Brasil"
author: "Alexandre Loures"
date: "`r Sys.Date()`"
output: bookdown::gitbook
site: bookdown::bookdown_site
documentclass: book
cover-image: images/logo-R.png
bibliography: [econometrics.bib]
biblio-style: apalike
link-citations: yes
colorlinks: yes
---
I don't know if it's related to the fact that I uninstalled Miktex and then installed Miktex again.
Thanks in advance for your attention!
Using Jekyll with Github Pages, when I share a post on Twitter no image is displayed in the Twitter Card.
I use the Jekyll-seo-tag but when adding a image tag in the Front Matter it doesn't work and I get a 404 instead of the post when I go to the corresponding URL.
What I tried :
---
layout: post
title: "lorem ispum - Week 22 of 2018"
subtitle: "An inside look at ...."
date: 2018-06-04 17:00:00
authors: [ John Doe ]
icon: icon-calendar
tags:
- core-weekly
image: /assets/images/2017/04/...
---
Found the problem.
The image tag should not be in the last position in the Front Matter.
When I put it in the middle it works, I get the image on Twitter card.
See below:
---
layout: post
title: "lorem ispum - Week 22 of 2018"
subtitle: "An inside look at ...."
date: 2018-06-04 17:00:00
authors: [ John Doe ]
image: /assets/images/2017/04/...
icon: icon-calendar
tags:
- core-weekly
---
I know this question was already asked in the past in this forum (1, 2, 3). Before you mark this as duplicated, I tried all the answers with no success. Most of the questions were asked long ago, and some updates related with pandoc might affect nowadays results.
The issue is that I am writing a scientific paper using RMarkdown, and would like to export the results either in HTML, PDF or Word files.
More importantly is that there are 12 authors signing the papers. Some of the authors present more than one affiliation, and some authors presenting the same affiliation.
My question is very clear: How can I edit the YAML to include all the authors with all the affiliations in the YAML in order to export to different formats (HTML, PDF, DOC)?
I tried this YAML:
---
title: "My title"
author:
- name: Mario Modesto-Mata^1,2^
email: paleomariomm#gmail.com
- name: Christopher^1^
- name: Seaghán Mhartain^2^
- name: Rita Yuri Ynoue^1^
address:
- code: 1
address: Instituto de Astronomía, Geofísica e Ciências Atmosféricas, Universidade de São Paulo
- code: 2
address: Faculdade de Medicina, Universidade de São Paulo
date: "1 October 2018"
output:
pdf_document:
number_sections: yes
toc: yes
toc_depth: 4
word_document:
toc: yes
html_document:
css: Scripts accesorios/estiloboton.css
number_sections: yes
theme: sandstone
toc: yes
toc_depth: 4
bibliography: references.bib
csl: science.csl
---
PDF output
This is what I see when I export to PDF the .Rmd file:
Instead of the authors, I see true and no affiliations.
HTML output
I see the authors and not all the affiliation numbers. The affiliations themselves remain hidden.
DOCX output
Neither names nor affiliations appear in the final Word file.
My system
I am using the latest RStudio version (Version 1.1.453), running on Linux Mint 19 Cinnamon.
UPDATE: original example
---
title: "My title"
author:
- Mario Modesto-Mata:
email: paleomariomm#gmail.com
institute: [cenieh, ucl1, ppex]
correspondence: true
- M. Christopher Dean:
institute: [ucl2, nhm]
- Yuliet Quintino:
institute: ubu
- Rebeca García-González:
institute: ubu
- Rodrigo S. Lacruz:
institute: nyu
- Timothy G. Bromage:
institute: nyu
- Cecilia García-Campos:
institute: [cenieh, ucl1]
- Marina Martínez de Pinillos:
institute: cenieh
- Laura Martín-Francés:
institute: [bor, cenieh]
- María Martinón-Torres:
institute: [cenieh, ucl1]
- Eudald Carbonell:
institute: [iphes, urv]
- Juan Luis Arsuaga:
institute: [isciii, ucm]
- José María Bermúdez de Castro:
institute: [cenieh, ucl1]
institute:
- cenieh: Centro Nacional de Investigación sobre la Evolución Humana (CENIEH), Paseo Sierra de Atapuerca 3, 09002, Burgos, Spain
- ucl1: Department of Anthropology, University College London, London, WC1H 0BW, UK
- ucl2: Department of Cell and Developmental Biology, University College London, Gower Street, London, WC1E 6BT, UK
- ubu: Laboratorio de Evolución Humana, Unierisdad de Burgos, Edificio I+D+i, Burgos, Spain
- ppex: Equipo Primeros Pobladores de Extremadura, Casa de Cultura Rodríguez Moñino, Cáceres, Spain
- nhm: Centre for Human Evolution Research (CHER), Department of Earth Sciences, Natural History Museum, London, SW7 5BD, UK
- nyu: New York University
- bor: De la Préhistoire à l'Actuel - Culture, Environnement et Anthropologie, University of Bordeaux, CNRS, MCC, PACE, UMR 5199 F_33615, Pessac Cedex, France
- iphes: Institut Català de Paleoecologia Humana i Evolució Social (IPHES), Zona Educacional 4, Campus Sescelades, Edifici W3, Universitat Rovira i Virgili, Tarragona, Spain
- urv: Àrea de Prehistòria, Universitat Rovira i Virgili, Avinguda de Catalunya 35, 43002, Tarragona, Spain
- isciii: Centro mixto UCM-ISCIII de Evolución y Comportamiento humanos, Madrid, Spain
- ucm: Departamento de Geodinámica, Estratigrafía y Paleontología, Facultad de Ciencias Geológicas, Universidad Complutense de Madrid, Spain
date: "1 October 2018"
output:
pdf_document:
number_sections: yes
toc: yes
toc_depth: 4
pandoc_args:
- '--lua-filter=scholarly-metadata.lua'
- '--lua-filter=author-info-blocks.lua'
html_document:
css: Scripts accesorios/estiloboton.css
number_sections: yes
theme: sandstone
toc: yes
toc_depth: 4
word_document:
toc: yes
pandoc_args:
- '--lua-filter=scholarly-metadata.lua'
- '--lua-filter=author-info-blocks.lua'
bibliography: references.bib
csl: science.csl
---
There is, to the best of my knowledge, no one-size-fits-it-all solution as of now.
If the target was only PDF, I'd suggest rticles by RStudio. It's great.
A solution which also works with docx is more difficult. One possibility is to use pandoc Lua filters. The repository collecting useful filters contains two filters which will help you: scholarly-metadata and author-info-blocks. (Disclosure: I wrote these.)
Place the .lua files in your directory, change the YAML structure a bit, and instruct pandoc to run the filters:
---
title: "My title"
author:
- Mario Modesto-Mata:
email: paleomariomm#gmail.com
institute: [astro, med]
correspondence: true
- name: Christopher
institute: astro
- name: Seaghán Mhartain
institute: med
- name: Rita Yuri Ynoue
institute: astro
institute:
- astro: Instituto de Astronomía, Geofísica e Ciências Atmosféricas, Universidade de São Paulo
- med: Faculdade de Medicina, Universidade de São Paulo
date: "1 October 2018"
output:
word_document:
toc: yes
pandoc_args:
- '--lua-filter=scholarly-metadata.lua'
- '--lua-filter=author-info-blocks.lua'
pdf_document:
number_sections: yes
toc: yes
toc_depth: 4
pandoc_args:
- '--lua-filter=scholarly-metadata.lua'
- '--lua-filter=author-info-blocks.lua'
---
This will be the PDF output:
while this is what it looks like in Word:
The affiliation and contact information is added to the body text, which is why the toc is displayed above it.
I'm using a Jekyll template for podcast site and RSS, including iTunes info. Now, my podcast.yml file is like this :
name: "Fate Masters"
gpluspage: "https://plus.google.com/communities/100913016060492249875"
copyright: (CC BY-NC-SA) 2015 - Fate Masters
language: pt-br
podcast_links:
- format: MP3
link: http://feeds.feedburner.com/FateMastersRPG
- format: OGG
link: http://feeds.feedburner.com/FateMastersRPG-OGG
itunes-explicit: "NO"
itunes-keywords: "RPG, Fate, Fate Básico, Mestre, Narrador"
itunes-podcast_image: /images/FateMasters.jpg
itunes-author: "Fate Masters"
itunes-email: fabiocosta0305#gmail.com
itunes-categories:
- RPG
- Fate
- Fate Core
- Fate Básico
However... See all those itunes-* tags... I like to put this as an itunes structured info with pairs like - categories and so... But I can't do this, because using site.podcast.itunes.copyright would return nothing...
Any tips
If your file is a data file, you will have to put all you podcasts in this same file.
In order to do this, you will have to reformat a little :
- name: "Fate Masters"
gpluspage: "https://plus.google.com/communities/100913016060492249875"
copyright: (CC BY-NC-SA) 2015 - Fate Masters
language: pt-br
podcast_links:
- format: MP3
link: http://feeds.feedburner.com/FateMastersRPG
- format: OGG
link: http://feeds.feedburner.com/FateMastersRPG-OGG
itunes:
explicit: "NO"
keywords: "RPG, Fate, Fate Básico, Mestre, Narrador"
podcast_image: /images/FateMasters.jpg
author: "Fate Masters"
email: fabiocosta0305#gmail.com
categories:
- RPG
- Fate
- Fate Core
- Fate Básico
- name: "other"
copyright: MIT
Then you can loop over podcasts like this :
{% for p in site.data.podcast %}
<h2>{{ p.name }}</h2>
<p>{{ p.copyright }}</p>
{% endfor %}
Here's the link to the page: Chapter 3, Practical: A Simple Database.
Essentially I have a database of lists with four values that I want to display. This is done with
(defun dump-db ()
(dolist (cd *db*)
(format t "~{~a:~10t~a~%~}~%" cd)))
The only problem is that the output isn't quite right:
TITLE: Home
ARTIST: Dixie Chicks
RATING: 9
RIPPED: T
... (Shortened for brevity)
For some reason "Home" doesn't start in the 10th column, can someone tell me why? I'm using SBCL to run the code, most recent version.
Two things:
Remark:
0] says that you are in a debug loop. Get out of it. help shows the command.
Problem:
Maybe it is a bug with SBCL. You might want to discuss it on its mailing list. That would be useful.
My guess:
* (dump-db)
^^ <- 2 characters
TITLE: Home
^^^^^^^^ <- 8 characters, 2 less than specified
If you are back on the toplevel, you then see that the SBCL prompt is * - which is two characters long. Now you see that the first indentation of Home is two characters short. So the Lisp printer thinks that the two characters of the prompt are on the same line and then position ten is on the next eight characters - two less than needed. Maybe the Lisp printer is confused by some way the REPL is programmed. The next lines then are fine.
Btw., this does not happen with LispWorks or Clozure CL.
0] (dump-db)
TITLE: Home
ARTIST: Dixie Chicks
RATING: 9
RIPPED: T
TITLE: Fly
ARTIST: Dixie Chicks
RATING: 8
RIPPED: T
TITLE: Roses
ARTIST: Kethy Mattea
RATING: 7
RIPPED: T
NIL
0] (dump-db)
TITLE: Home
ARTIST: Dixie Chicks
RATING: 9
RIPPED: T
TITLE: Fly
ARTIST: Dixie Chicks
RATING: 8
RIPPED: T
TITLE: Roses
ARTIST: Kethy Mattea
RATING: 7
RIPPED: T
NIL
0]
It appears to have fixed itself... I'm not sure how or why (questions I would still love an answer to) though.