bioinformatics

bioinformatics

How to run Mugsy multiple alignment software on Linux Ubuntu 11.04?

BioPython: Residues size differ from position

Clusters of Orthologous Groups [Software]

Is there a way to retrieve a list of annotations from Apache UIMA rather than using the CAS GUI?

Send a Flat file attachment in the workflow in Informatica Developer

How to find ALL optimal local alignments using Smith-Waterman?

Retrieving DNA sequences from a database of protein sequences?

Building .sif file from microarray ,tab file with expression valuses and gene id only

segmentation fault with SIFT

BLAST Database error: No alias or index file found for nucleotide database

CEL files processing: are all cel files raw data?

How to find a sequence that can't give any results by Blast, but give by FASTA?

.cat.fastq to .cat.fasta file conversion problems

Create VCF from .bim, .bed and .fam files [closed]

Alignement sequence to existing profile

biojava Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException:

Encode digital information to DNA

Traceback in DP Needleman-Wunsch/Smith-Waterman

from hg18 to GRCh38 reference human genome [closed]

Prove that L >= G for Local and Global alignments of a specific function

PyMOL get the name of selected protein

vcf to ped format: redefine non-dbSNPs

How to handle multiple optimal edit paths implementing Needleman-Wunsche algorithm?

AlignIO gives 'AssertionError' when reading emboss alignment files

extracting highly similar proteins from a protein databases

What constitutes side chain atoms in pdb file?

construct DNA sequence based on variation and human reference

How to change long gene names to abbreviated in some automatic way (microarray data processing)?

How to fetch all records using NCBI Batch Entrez

ORF and amino identification using BioPython's translate() method-- incorrect translations?

How to create 3D DNA Origami struture using cadnano

Gene Ontology term Level vs. Gene Ontology term Type

Finding RNAs and information in a region

Picard SamToFastq only extracts one read, then throws an error

Strand specific tophat/cufflinks

Trim Illumina reads in a bam/sam file

Can you use blastn to check for exact matches?

blast given GI NCBI nucleotide database

transform pmc-id -> pmid

How to read a DNA sequence from a text File and store it in an array in C?

FASTA Algorithm Explanation

A PWM with gapped alignments in Biopython

PUBMED author/article database [closed]

Add tag to bioperl DB::SAM/BAM

NCBI gene database question

How to find rare codons in a given sequence?

Binning sequence reads by GC content [closed]

Coding Blosum62 in the source code

multiFASTA file processing

Assessing the significance of a BLASTn score?

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