bioinformatics

bioinformatics

Eliminating incomplete genes from a fasta file in unix

Cytoscape vs STRING for long list of proteins

In BLAST, how to get the HSP corresponding to each word?

Is the seed in BLAST expanded to the left and right sides into HSP?

Snakemake does not recognise job failure due to timeout with error code -11

"wget" command question from Blobtool tutorial

How to exclude long protein sequences with FASTA format from my protein list [closed]

How to demultiplex BCL data with two different barcoding systems?

Combine multiple VCF files into one large VCF file

Should you re-combine split fastq files after genome assembly? [closed]

extracting binding data in PDB files

Rule-specific wildcards in Snakemake

How can I programmatically get the PMID from the DOI of a paper that isn't in PMC (i.e., that doesn't have a PMCID)?

How to use entrezpy and Biopython Entrez libraries to access ClinVar data from genomic position of variant

Check if a value is between certain values in row of a file

Home Questions Tags Users Unanswered Extract only the amino acid residues on the surface of protein structure data

Heatmap clustering with annotion name and category

Implementation of biological model

How can i eliminate duplicated sequences in fasta file

determining the percentage of the coverage of reads against reference genome

Error remove over-representative sequences : TypeError: coercing to Unicode: need string or buffer, NoneType found

Finding the longest ORF (open reading frame) in reading frame 2 in multiple sequences in a FASTA file

Snakemake can't identify the rule

BLAST inconsistent results

Recommended languages for reading and manipulating BAM and VCF files? [closed]

Snakemake - parameter file treated as a wildcard

I don't know how to work with an sdf file

Can I do PCA (using MDAnalysis in python3.x) with PDB file only?

Platanus_allee genome assembler failed assebly error

Snakemake, how to change output filename when using wildcards

running nanofilt with snakemake

snakemake running nanopolish and making it wait until previous rule is done

Add heteroatom to pdb file

How to run Biopython. I had installed it but it returns <no module found>?

Filter sequences with more than 8 same consecutive nucleotides in a fastq file?

Snakemake Checkpoint Throws (exited with non-zero exit code) even after correct completion

specify source files when using snakemake remote prefix

Downloading STAR on MAC OS Mojave

Slowdown when using Mutect2 container inside Nextflow

Snakemake issues running rules on two different subsets of wildcards

Preventing input function from generating files not present in sample file

How to save a molmap/density map on Chimera in mrc format using python script or Command line?

Executing checkpoint intermediate Commands

NameError in Snakemake dryrun mode

How can I find the number of the first base of a gene in a FASTA file?

How to extract entire chunks of text from a Profile Hidden Markov .hmm file

Snakemake and Pandas syntax: Getting sample specific parameters from the sample table

Snakemake conda env parameter is not taken from config.yaml file

Snakemake tabular config

fastqc using Snakemake

Error when converting .gprobs files from Impute2 to PLINK format

Why aren't local variables within nested functions associated?

RNA Splicing Python

unknown output in snakemake

RSeQC with multiQC and snakemake

Liftover dog canFam3 to human hg19

dyld: Library not loaded in Mac OS High Sierra

Snakemake error on shadow rules

Entrez E-Search results not matching up with online results

Snakemake remote: Keyerrpr

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