Efficient way to practice graph theory algorithms - algorithm

I just read about the breadth-first search algorithm in the Introduction to Algorithms book and I hand simulated the algorithm on paper. What I would like to do now is to implement it in code for extra practice.
I was thinking about implementing all the data structures from scratch (the adjacency list, the "color", "distance", and "parent" arrays) but then I remembered that there are currently graph libraries out there like the Boost graph library and some other graph APIs in Python.
I also tried looking for some BFS-related problems on UVA and Sphere Judge Online but I can't tell which problems would require a BFS solution.
My question is what would be the most painless way to practice these graph algorithms (not just limited to BFS, but will also come in useful when I want to implement DFS, Dijkstra, Floyd-Warshall, etc). Sites with practice problems are welcomed.

I personally think that the best way to understand those would be implementing the graph representation yourself from scratch.
On the one hand, that would show you actual implementation caveats from which you learn why or why not a particular algorithm might be interesting / good / efficient / whatever. On the other hand, I think that understanding graphs and their real life use, including its implications (recursion, performance/scalability, applications, alternatives, ...), is made easier through the bottom-up approach.
But maybe that's just me. The above is very personal taste.

I found your question interesting, I googled a bit and I found JGraphEd.
It does not cover all graph algorithms but it looks like a good tool for experimentation.

I agree with balpha. The best way to really learn and understand algorithms is to do the implementation. Just pick an algorithm and implement it. When you reach a point where you get stuck or are unsure, look at a number of existing examples. You will then be able to compare your own thinking with that of others from a position of understanding instead of simply accepting what is offered.
Once you have learned what you want to, the best way to solidify your understanding is to try teach it to or describe it to somebody else. You might have some people willing to listen to you, or at the very least you could write a blog entry for people new to the algorithm you have just studied.
But if you are looking for "painless", then maybe you should stay clear of algorithms altogether ;-)

This site could help you
Here you have description of every problem on acm problemset. You can see category of each problem, and hint to solve it. Just browse for graph related problems. Good advice is to use those hints only if you tried to solve problem yourself and failed.

Visualization of some shortest path algorithms on real data, where the explored area is displayed in yellow:
(bidirectional) Dijkstra
A*

Related

Ordered Sequence of learning algorithm design techniques

So, I am taking a algorithms course this semester.
I have a basic understanding of design techniques and know that divide and conquer should be the first technique t learn.
But coming to backtracking, dynamic programming and greedy techniques I am confused to choose an appropriate order
While my course is structured in the order i described in above paragraph.
Suggest me..
I doubt you will lose anything by simply following the order that your course suggests. I notice that TutorialsPoint presents in a different order, and adds several other techniques. I think you will gain a lot by simply working your way through such material.
It's likely that your learning style is different from mine, but I find it very beneficial to do a breadth-first survey of a topic, happily accepting that I won't understand every detail the first time round, then drill down as my understanding increases. So I don't feel the need for a detailed order of study.

Fast Downward planner

I am currently studying the AI fast downward planner, and I would like some help in this area. I know that the planner receives a domain.pddl file and a problem.pddl file, in addition, it receives a search algorithm and a heuristic function.
Many planners (not just the fast downward - ex. the pyperplan planner) gives us the opportunity to modify or create our new search algorithms to reach a solution. But as I have seen there are so many search algorithms already.
My question is: what is the idea in implementing our own search algorithm? or am
Am I missing something?
I'm not sure what your question is, so I'm going to give two different answers.
Why do planning systems like Fast Downward have the option to write your own search algorithms, heuristics, etc.?
Automated domain-independent planning is an active research area where new ideas are constantly developed (for example at ICAPS). Implementing a new idea to evaluate is is much easier if you can base the implementation on an existing framework than if you have to start from scratch every time. It also helps with comparability. For example, if you develop a new search algorithm but leave the heuristic the same, your implementation is much easier to compare to a baseline if the baseline uses the same heuristic implementation. That is why a lot of work is based on Fast Downward an similar frameworks.
How do I come up with an idea for a new search algorithm?
This is much harder to answer. As a general approach I would say: Try to find cases where existing search algorithms "don't get it", for example, a problem that you can solve by looking at it but the search algorithm fails to solve it. Then try to figure out what you did to solve it, generalize that idea so it works on other cases as well and write it down as an algorithm.

Cut optimisation algorithm

Me and some of my friends at college were assigned a practical task of developing a net application for optimization of cutting rectangular parts from some kind of material. Something like apps in this list, but more simplistic. Basically, I'm interested if there is any source code for this kind of optimization algorithms available on the internet. I'm planning to develop the app using Adobe Flex framework. The programming part will be done in Actionscript 3, ofc. However, I doubt that there are any optimization samples for this language. There may be some for Java, C++, C#, Ruby or Python and other more popular languages, though(then I'd just have to rewrite it in AS). So, if anyone knows any free libs or algorithm code samples that would suit me, I'd like to hear your suggestions. :)
This sounds just like the stock cutting problem which is extermely hard! The best solutions use linear programming (typically based on the simplex method) with column generation (which, even after years on a constraint solving research project I feel unequipped to give a half decent explanation). In short, you won't want to try this approach in Actionscript; consequently, with whatever you do implement, you shouldn't expect great results on anything other than small problems.
The best advice I can offer, then, is to see if you can cut the source rectangle into strips (each of the width of the largest rectangles you need), then subdivide the remainder of each strip after the "head" rectangle has been removed.
I'd recommend using branch-and-bound as your optimisation strategy. BnB works by doing an exhaustive tree search that keeps track of the best solution seen so far. When you find a solution, update the bound, and backtrack looking for the next solution. Whenever you know your search takes you to a branch that you know cannot lead to a better solution than the best you have found, you can backtrack early at that point.
Since these search trees will be very large, you will probably want to place a time limit on the search and just return your best effort.
Hope this helps.
I had trouble finding examples when I wanted to do the same for the woodwoorking company I work for. The problem itself is NP-hard so you need to use an approximation algorithm like a first fit or best fit algorithm.
Do a search for 2d bin-packing algorithms. The one I found, you sort the panels biggest to smallest, then add the to the sheets in in order, putting in the first bin it will fit. Sorry don't have the code with with me and its in vb.net anyway.

3D symmetry search algorithm

This may be more appropriate for math overflow, but nevertheless:
Given a 3D structure (for example, a molecule), what is a good approach/algorithm to find symmetry (rotational/reflection/inversion/etc.)?
I came up with brute force naïve algorithm, but it seems there should be better approach.
I am not so much interested in genetic algorithms as I would like best symmetry rather then almost the best symmetry
there is this here: http://pubs.acs.org/doi/abs/10.1021/ci990322q from my field. would be good to know what mathematicians/computer science people came up with as well.
A link to website/paper would be great. Thanks
This paper should get you started:
http://graphics.stanford.edu/~niloy/research/approx_symmetry/paper_docs/approx_symmetry_sig_06.pdf
See this website for Symmetry Detection and Structure Discovery research. The papers at the bottom include the one that #Xavier Ho mentions.

Best Fit Scheduling Algorithm

I'm writing a scheduling program with a difficult programming problem. There are several events, each with multiple meeting times. I need to find an arrangement of meeting times such that each schedule contains any given event exactly once, using one of each event's multiple meeting times.
Obviously I could use brute force, but that's rarely the best solution. I'm guessing this is a relatively basic computer science problem, which I'll learn about once I am able to start taking computer science classes. In the meantime, I'd prefer any links where I could read up on this, or even just a name I could Google.
I think you should use genetic algorithm because:
It is best suited for large problem instances.
It yields reduced time complexity on the price of inaccurate answer(Not the ultimate best)
You can specify constraints & preferences easily by adjusting fitness punishments for not met ones.
You can specify time limit for program execution.
The quality of solution depends on how much time you intend to spend solving the program..
Genetic Algorithms Definition
Genetic Algorithms Tutorial
Class scheduling project with GA
There are several ways to do this
One approach is to do constraint programming. It is a special case of the dynamic programming suggested by feanor. It is helful to use a specialized library that can do the bounding and branching for you. (Google for "gecode" or "comet-online" to find libraries)
If you are mathematically inclined then you can also use integer programming to solve the problem. The basic idea here is to translate your problem in to a set of linear inequalities. (Google for "integer programming scheduling" to find many real life examples and google for "Abacus COIN-OR" for a useful library)
My guess is that constraint programming is the easiest approach, but integer programming is useful if you want to include real variables in you problem at some point.
Your problem description isn't entirely clear, but if all you're trying to do is find a schedule which has no overlapping events, then this is a straightforward bipartite matching problem.
You have two sets of nodes: events and times. Draw an edge from each event to each possible meeting time. You can then efficiently construct the matching (the largest possible set of edges between the nodes) using augmented paths. This works because you can always convert a bipartite graph into an equivalent flow graph.
An example of code that does this is BIM. Standard graphing libraries such as GOBLIN and NetworkX also have bipartite matching implementations.
This sounds like this could be a good candidate for a dynamic programming solution, specifically something similar to the interval scheduling problem.
There are some visuals here for the interval scheduling problem specifically, which may make the concept clearer. Here is a good tutorial on dynamic programming overall.

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