Related
I have the following problem:
I define a function:
f[t_]:=(1-Exp[-t])/(1+Exp[-t])
and integrate it by:
g[t_]:=Integrate[f[t],t]
then when I try to plot it using:
Plot[g[t],{t,0,10}]
I get a list of errors of the kind Integrate::ilim: Invalid integration variable or limit(s) in 1.0000204285714285.
I don't understand where the problem is, but I expect it to be in the way I defined g[t], even if when I call it I get a well defined expression, namely -t+2Log[1+e^t] (also, when plotting this expression directly I don't get any problems). So, how can I solve this problem?
I tried by redefining the function as:
g[t_]:=Integrate[f[x],{x,0,t}]
but this way it takes a lot of time to plot (if it even does, after about 10 seconds I interrupted it, it is too slow anyway).
As correctly stated in the comments, changing := (SetDelayed) to = (Set) in the definition for g fixes the problem. The difference between these two definitions is that with Set the right hand side of the definition is evaluated at definition time and the closed form of the integral is assigned as a value of function g:
f[t_] := (1 - Exp[-t])/(1 + Exp[-t])
g[t_] = Integrate[f[x], {x, 0, t}];
Definition[g]
(* => g[t_]=ConditionalExpression[-t-Log[4]+2 Log[1+E^t],E^t>=-1] *)
With SetDelayed the right hand side (Integrate[f[x], {x, 0, t}]) is evaluated at each call of function g which results in very slow evaluation.
I've got some symbols which should are non-commutative, but I don't want to have to remember which expressions have this behaviour whilst constructing equations.
I've had the thought to use MakeExpression to act on the raw boxes, and automatically uplift multiply to non-commutative multiply when appropriate (for instance when some of the symbols are non-commutative objects).
I was wondering whether anyone had any experience with this kind of configuration.
Here's what I've got so far:
(* Detect whether a set of row boxes represents a multiplication *)
Clear[isRowBoxMultiply];
isRowBoxMultiply[x_RowBox] := (Print["rowbox: ", x];
Head[ToExpression[x]] === Times)
isRowBoxMultiply[x___] := (Print["non-rowbox: ", x]; False)
(* Hook into the expression maker, so that we can capture any \
expression of the form F[x___], to see how it is composed of boxes, \
and return true or false on that basis *)
MakeExpression[
RowBox[List["F", "[", x___, "]"]], _] := (HoldComplete[
isRowBoxMultiply[x]])
(* Test a number of expressions to see whether they are automatically \
detected as multiplies or not. *)
F[a]
F[a b]
F[a*b]
F[a - b]
F[3 x]
F[x^2]
F[e f*g ** h*i j]
Clear[MakeExpression]
This appears to correctly identify expressions that are multiplication statements:
During evaluation of In[561]:= non-rowbox: a
Out[565]= False
During evaluation of In[561]:= rowbox: RowBox[{a,b}]
Out[566]= True
During evaluation of In[561]:= rowbox: RowBox[{a,*,b}]
Out[567]= True
During evaluation of In[561]:= rowbox: RowBox[{a,-,b}]
Out[568]= False
During evaluation of In[561]:= rowbox: RowBox[{3,x}]
Out[569]= True
During evaluation of In[561]:= non-rowbox: SuperscriptBox[x,2]
Out[570]= False
During evaluation of In[561]:= rowbox: RowBox[{e,f,*,RowBox[{g,**,h}],*,i,j}]
Out[571]= True
So, it looks like it's not out of the questions that I might be able to conditionally rewrite the boxes of the underlying expression; but how to do this reliably?
Take the expression RowBox[{"e","f","*",RowBox[{"g","**","h"}],"*","i","j"}], this would need to be rewritten as RowBox[{"e","**","f","**",RowBox[{"g","**","h"}],"**","i","**","j"}] which seems like a non trivial operation to do with the pattern matcher and a rule set.
I'd be grateful for any suggestions from those more experienced with me.
I'm trying to find a way of doing this without altering the default behaviour and ordering of multiply.
Thanks! :)
Joe
This is not a most direct answer to your question, but for many purposes working as low-level as directly with the boxes might be an overkill. Here is an alternative: let the Mathematica parser parse your code, and make a change then. Here is a possibility:
ClearAll[withNoncommutativeMultiply];
SetAttributes[withNoncommutativeMultiply, HoldAll];
withNoncommutativeMultiply[code_] :=
Internal`InheritedBlock[{Times},
Unprotect[Times];
Times = NonCommutativeMultiply;
Protect[Times];
code];
This replaces Times dynamically with NonCommutativeMultiply, and avoids the intricacies you mentioned. By using Internal`InheritedBlock, I make modifications to Times local to the code executed inside withNoncommutativeMultiply.
You now can automate the application of this function with $Pre:
$Pre = withNoncommutativeMultiply;
Now, for example:
In[36]:=
F[a]
F[a b]
F[a*b]
F[a-b]
F[3 x]
F[x^2]
F[e f*g**h*i j]
Out[36]= F[a]
Out[37]= F[a**b]
Out[38]= F[a**b]
Out[39]= F[a+(-1)**b]
Out[40]= F[3**x]
Out[41]= F[x^2]
Out[42]= F[e**f**g**h**i**j]
Surely, using $Pre in such manner is hardly appropriate, since in all your code multiplication will be replaced with noncommutative multiplication - I used this as an illustration. You could make a more complicated redefinition of Times, so that this would only work for certain symbols.
Here is a safer alternative based on lexical, rather than dynamic, scoping:
ClearAll[withNoncommutativeMultiplyLex];
SetAttributes[withNoncommutativeMultiplyLex, HoldAll];
withNoncommutativeMultiplyLex[code_] :=
With ## Append[
Hold[{Times = NonCommutativeMultiply}],
Unevaluated[code]]
you can use this in the same way, but only those instances of Times which are explicitly present in the code would be replaced. Again, this is just an illustration of the principles, one can extend or specialize this as needed. Instead of With, which is rather limited in its ability to specialize / add special cases, one can use replacement rules which have similar semantics.
If I understand correctly, you want to input
a b and a*b
and have MMA understand automatically that Times is really a non commutative operator (which has its own -separate - commutation rules).
Well, my suggestion is that you use the Notation package.
It is very powerful and (relatively) easy to use (especially for a sophisticated user like you seem to be).
It can be used programmatically and it can reinterpret predefined symbols like Times.
Basically it can intercept Times and change it to MyTimes. You then write code for MyTimes deciding for example which symbols are non commuting and then the output can be pretty formatted again as times or whatever else you wish.
The input and output processing are 2 lines of code. That’s it!
You have to read the documentation carefully and do some experimentation, if what you want is not more or less “standard hacking” of the input-output jobs.
Your case seems to me pretty much standard (again: If I understood well what you want to achieve) and you should find useful to read the “advanced” pages of the Notation package.
To give you an idea of how powerful and flexible the package is, I am using it to write the input-output formatting of a sizable package of Category Theory where noncommutative operations abound. But wait! I am not just defining ONE noncommutative operation, I am defining an unlimited number of noncommutative operations.
Another thing I did was to reinterpret Power when the arguments are categories, without overloading Power. This allows me to treat functorial categories using standard mathematics notation.
Now my “infinite” operations and "super Power" have the same look and feel of standard MMA symbols, including copy-paste functionality.
So, this doesn't directly answer the question, but it's does provide the sort of implementation that I was thinking about.
So, after a bit of investigation and taking on board some of #LeonidShifrin's suggestions, I've managed to implement most of what I was thinking of. The idea is that it's possible to define patterns that should be considered to be non-commuting quantities, using commutingQ[form] := False. Then any multiplicative expression (actually any expression) can be wrapped with withCommutativeSensitivity[expr] and the expression will be manipulated to separate the quantities into Times[] and NonCommutativeMultiply[] sub-expressions as appropriate,
In[1]:= commutingQ[b] ^:= False;
In[2]:= withCommutativeSensitivity[ a (a + b + 4) b (3 + a) b ]
Out[1]:= a (3 + a) (a + b + 4) ** b ** b
Of course it's possible to use $Pre = withCommutativeSensitivity to have this behaviour become default (come on Wolfram! Make it default already ;) ). It would, however, be nice to have it a more fundamental behaviour though. I'd really like to make a module and Needs[NonCommutativeQuantities] at the beginning of any note book that is needs it, and not have all the facilities that use $Pre break on me (doesn't tracing use it?).
Intuitively I feel that there must be a natural way to hook this functionality into Mathematica on at the level of box parsing and wire it up using MakeExpression[]. Am I over extending here? I'd appreciate any thoughts as to whether I'm chasing up a blind alley. (I've had a few experiments in this direction, but always get caught in a recursive definition that I can't work out how to break).
Any thoughts would be gladly received,
Joe.
Code
Unprotect[NonCommutativeMultiply];
ClearAll[NonCommutativeMultiply]
NonCommutativeMultiply[a_] := a
Protect[NonCommutativeMultiply];
ClearAll[commutingQ]
commutingQ::usage = "commutingQ[\!\(\*
StyleBox[\"expr\", \"InlineFormula\",\nFontSlant->\"Italic\"]\)] \
returns True if expr doesn't contain any constituent parts that fail \
the commutingQ test. By default all objects return True to \
commutingQ.";
commutingQ[x_] := If[Length[x] == 0, True, And ## (commutingQ /# List ## x)]
ClearAll[times2, withCommutativeSensitivity]
SetAttributes[times2, {Flat, OneIdentity, HoldAll}]
SetAttributes[withCommutativeSensitivity, HoldAll];
gatherByCriteria[list_List, crit_] :=
With[{gathered =
Gather[{#, crit[#1]} & /# list, #1[[2]] == #2[[2]] &]},
(Identity ## Union[#[[2]]] -> #[[1]] &)[Transpose[#]] & /# gathered]
times2[x__] := Module[{a, b, y = List[x]},
Times ## (gatherByCriteria[y, commutingQ] //.
{True -> Times, False -> NonCommutativeMultiply,
HoldPattern[a_ -> b_] :> a ## b})]
withCommutativeSensitivity[code_] := With ## Append[
Hold[{Times = times2, NonCommutativeMultiply = times2}],
Unevaluated[code]]
This answer does not address your question but rather the problem that leads you to ask that question. Mathematica is pretty useless when dealing with non-commuting objects but since such objects abound in, e.g., particle physics, there are some usefull packages around to deal with the situation.
Look at the grassmanOps package. They have a method to define symbols as either commuting or anti-commuting and overload the standard NonCommutativeMultiply to handle, i.e. pass through, commuting symbols. They also define several other operators, such as Derivative, to handle anti-commuting symbols. It is probably easily adapted to cover arbitrary commutation rules and it should at the very least give you an insigt into what things need to be changed if you want to roll your own.
I'm in love with Ruby. In this language all core functions are actually methods. That's why I prefer postfix notation – when the data, which I want to process is placed left from the body of anonymous processing function, for example: array.map{...}. I believe, that it has advantages in how easy is this code to read.
But Mathetica, being functional (yeah, it can be procedural if you want) dictates a style, where Function name is placed left from the data. As we can see in its manuals, // is used only when it's some simple Function, without arguments, like list // MatrixForm. When Function needs a lot of arguments, people who wrote manuals, use syntax F[data].
It would be okay, but my problem is the case F[f,data], for example Do[function, {x, a, b}]. Most of Mathematica functions (if not all) have arguments in exactly this order – [function, data], not [data, function]. As I prefer to use pure functions to keep namespace clean instead of creating a lot of named functions in my notebook, the argument function can be too big – so big, that argument data would be placed on the 5-20th line of code after the line with Function call.
This is why sometimes, when evil Ruby nature takes me under control, I rewrite such functions in postfix way:
Because it's important for me, that pure function (potentially big code) is placed right from processing data. Yeah I do it and I'm happy. But there are two things:
this causes Mathematica's highlighting parser problem: the x in postfix notation is highlighted with blue color, not turquoise;
everytime when I look into Mathematica manuals, I see examples like this one: Do[x[[i]] = (v[[i]] - U[[i, i + 1 ;; n]].x[[i + 1 ;; n]])/ U[[i, i]], {i, n, 1, -1}];, which means... hell, they think it's easy to read/support/etc.?!
So these two things made me ask this question here: am I so bad boy, that use my Ruby-style, and should I write code like these guys do, or is it OK, and I don't have to worry, and should write as I like to?
The style you propose is frequently possible, but is inadvisable in the case of Do. The problem is that Do has the attribute HoldAll. This is important because the loop variable (x in the example) must remain unevaluated and be treated as a local variable. To see this, try evaluating these expressions:
x = 123;
Do[Print[x], {x, 1, 2}]
(* prints 1 and 2 *)
{x, 1, 2} // Do[Print[x], #]&
(* error: Do::itraw: Raw object 123 cannot be used as an iterator.
Do[Print[x], {123, 1, 2}]
*)
The error occurs because the pure function Do[Print[x], #]& lacks the HoldAll attribute, causing {x, 1, 2} to be evaluated. You could solve the problem by explicitly defining a pure function with the HoldAll attribute, thus:
{x, 1, 2} // Function[Null, Do[Print[x], #], HoldAll]
... but I suspect that the cure is worse than the disease :)
Thus, when one is using "binding" expressions like Do, Table, Module and so on, it is safest to conform with the herd.
I think you need to learn to use the styles that Mathematica most naturally supports. Certainly there is more than one way, and my code does not look like everyone else's. Nevertheless, if you continue to try to beat Mathematica syntax into your own preconceived style, based on a different language, I foresee nothing but continued frustration for you.
Whitespace is not evil, and you can easily add line breaks to separate long arguments:
Do[
x[[i]] = (v[[i]] - U[[i, i + 1 ;; n]].x[[i + 1 ;; n]]) / U[[i, i]]
, {i, n, 1, -1}
];
This said, I like to write using more prefix (f # x) and infix (x ~ f ~ y) notation that I usually see, and I find this valuable because it is easy to determine that such functions are receiving one and two arguments respectively. This is somewhat nonstandard, but I do not think it is kicking over the traces of Mathematica syntax. Rather, I see it as using the syntax to advantage. Sometimes this causes syntax highlighting to fail, but I can live with that:
f[x] ~Do~ {x, 2, 5}
When using anything besides the standard form of f[x, y, z] (with line breaks as needed), you must be more careful of evaluation order, and IMHO, readability can suffer. Consider this contrived example:
{x, y} // # + 1 & ## # &
I do not find this intuitive. Yes, for someone intimate with Mathematica's order of operations, it is readable, but I believe it does not improve clarity. I tend to reserve // postfix for named functions where reading is natural:
Do[f[x], {x, 10000}] //Timing //First
I'd say it is one of the biggest mistakes to try program in a language B in ways idiomatic for a language A, only because you happen to know the latter well and like it. There is nothing wrong in borrowing idioms, but you have to make sure to understand the second language well enough so that you know why other people use it the way they do.
In the particular case of your example, and generally, I want to draw attention to a few things others did not mention. First, Do is a scoping construct which uses dynamic scoping to localize its iterator symbols. Therefore, you have:
In[4]:=
x=1;
{x,1,5}//Do[f[x],#]&
During evaluation of In[4]:= Do::itraw: Raw object
1 cannot be used as an iterator. >>
Out[5]= Do[f[x],{1,1,5}]
What a surprise, isn't it. This won't happen when you use Do in a standard fashion.
Second, note that, while this fact is largely ignored, f[#]&[arg] is NOT always the same as f[arg]. Example:
ClearAll[f];
SetAttributes[f, HoldAll];
f[x_] := Print[Unevaluated[x]]
f[5^2]
5^2
f[#] &[5^2]
25
This does not affect your example, but your usage is close enough to those cases affected by this, since you manipulate the scopes.
Mathematica supports 4 ways of applying a function to its arguments:
standard function form: f[x]
prefix: f#x or g##{x,y}
postfix: x // f, and
infix: x~g~y which is equivalent to g[x,y].
What form you choose to use is up to you, and is often an aesthetic choice, more than anything else. Internally, f#x is interpreted as f[x]. Personally, I primarily use postfix, like you, because I view each function in the chain as a transformation, and it is easier to string multiple transformations together like that. That said, my code will be littered with both the standard form and prefix form mostly depending on whim, but I tend to use standard form more as it evokes a feeling of containment with regards to the functions parameters.
I took a little liberty with the prefix form, as I included the shorthand form of Apply (##) alongside Prefix (#). Of the built in commands, only the standard form, infix form, and Apply allow you easily pass more than one variable to your function without additional work. Apply (e.g. g ## {x,y}) works by replacing the Head of the expression ({x,y}) with the function, in effect evaluating the function with multiple variables (g##{x,y} == g[x,y]).
The method I use to pass multiple variables to my functions using the postfix form is via lists. This necessitates a little more work as I have to write
{x,y} // f[ #[[1]], #[[2]] ]&
to specify which element of the List corresponds to the appropriate parameter. I tend to do this, but you could combine this with Apply like
{x,y} // f ## #&
which involves less typing, but could be more difficult to interpret when you read it later.
Edit: I should point out that f and g above are just placeholders, they can, and often are, replaced with pure functions, e.g. #+1& # x is mostly equivalent to #+1&[x], see Leonid's answer.
To clarify, per Leonid's answer, the equivalence between f#expr and f[expr] is true if f does not posses an attribute that would prevent the expression, expr, from being evaluated before being passed to f. For instance, one of the Attributes of Do is HoldAll which allows it to act as a scoping construct which allows its parameters to be evaluated internally without undo outside influence. The point is expr will be evaluated prior to it being passed to f, so if you need it to remain unevaluated, extra care must be taken, like creating a pure function with a Hold style attribute.
You can certainly do it, as you evidently know. Personally, I would not worry about how the manuals write code, and just write it the way I find natural and memorable.
However, I have noticed that I usually fall into definite patterns. For instance, if I produce a list after some computation and incidentally plot it to make sure it's what I expected, I usually do
prodListAfterLongComputation[
args,
]//ListPlot[#,PlotRange->Full]&
If I have a list, say lst, and I am now focusing on producing a complicated plot, I'll do
ListPlot[
lst,
Option1->Setting1,
Option2->Setting2
]
So basically, anything that is incidental and perhaps not important to be readable (I don't need to be able to instantaneously parse the first ListPlot as it's not the point of that bit of code) ends up being postfix, to avoid disrupting the already-written complicated code it is applied to. Conversely, complicated code I tend to write in the way I find easiest to parse later, which, in my case, is something like
f[
g[
a,
b,
c
]
]
even though it takes more typing and, if one does not use the Workbench/Eclipse plugin, makes it more work to reorganize code.
So I suppose I'd answer your question with "do whatever is most convenient after taking into account the possible need for readability and the possible loss of convenience such as code highlighting, extra work to refactor code etc".
Of course all this applies if you're the only one working with some piece of code; if there are others, it is a different question alltogether.
But this is just an opinion. I doubt it's possible for anybody to offer more than this.
For one-argument functions (f#(arg)), ((arg)//f) and f[arg] are completely equivalent even in the sense of applying of attributes of f. In the case of multi-argument functions one may write f#Sequence[args] or Sequence[args]//f with the same effect:
In[1]:= SetAttributes[f,HoldAll];
In[2]:= arg1:=Print[];
In[3]:= f#arg1
Out[3]= f[arg1]
In[4]:= f#Sequence[arg1,arg1]
Out[4]= f[arg1,arg1]
So it seems that the solution for anyone who likes postfix notation is to use Sequence:
x=123;
Sequence[Print[x],{x,1,2}]//Do
(* prints 1 and 2 *)
Some difficulties can potentially appear with functions having attribute SequenceHold or HoldAllComplete:
In[18]:= Select[{#, ToExpression[#, InputForm, Attributes]} & /#
Names["System`*"],
MemberQ[#[[2]], SequenceHold | HoldAllComplete] &][[All, 1]]
Out[18]= {"AbsoluteTiming", "DebugTag", "EvaluationObject", \
"HoldComplete", "InterpretationBox", "MakeBoxes", "ParallelEvaluate", \
"ParallelSubmit", "Parenthesize", "PreemptProtect", "Rule", \
"RuleDelayed", "Set", "SetDelayed", "SystemException", "TagSet", \
"TagSetDelayed", "Timing", "Unevaluated", "UpSet", "UpSetDelayed"}
My code relies on version of Element which works like MemberQ, but when I load Combinatorica, Element gets redefined to work like Part. What is the easiest way to fix this conflict? Specifically, what is the syntax to remove Combinatorica's definition from DownValues? Here's what I get for DownValues[Element]
{HoldPattern[
Combinatorica`Private`a_List \[Element] \
{Combinatorica`Private`index___}] :>
Combinatorica`Private`a[[Combinatorica`Private`index]],
HoldPattern[Private`x_ \[Element] Private`list_List] :>
MemberQ[Private`list, Private`x]}
If your goal is to prevent Combinatorica from installing the definition in the first place, you can achieve this result by loading the package for the first time thus:
Block[{Element}, Needs["Combinatorica`"]]
However, this will almost certainly make any Combinatorica features that depend upon the definition fail (which may or may not be of concern in your particular application).
You can do several things. Let us introduce a convenience function
ClearAll[redef];
SetAttributes[redef, HoldRest];
redef[f_, code_] := (Unprotect[f]; code; Protect[f])
If you are sure about the order of definitions, you can do something like
redef[Element, DownValues[Element] = Rest[DownValues[Element]]]
If you want to delete definitions based on the context, you can do something like this:
redef[Element, DownValues[Element] =
DeleteCases[DownValues[Element],
rule_ /; Cases[rule, x_Symbol /; (StringSplit[Context[x], "`"][[1]] ===
"Combinatorica"), Infinity, Heads -> True] =!= {}]]
You can also use a softer way - reorder definitions rather than delete:
redef[Element, DownValues[Element] = RotateRight[DownValues[Element]]]
There are many other ways of dealing with this problem. Another one (which I already recommended) is to use UpValues, if this is suitable. The last one I want to mention here is to make a kind of custom dynamic scoping construct based on Block, and wrap it around your code. I personally find it the safest variant, in case if you want strictly your definition to apply (because it does not care about the order in which various definitions could have been created - it removes all of them and adds just yours). It is also safer in that outside those places where you want your definitions to apply (by "places" I mean parts of the evaluation stack), other definitions will still apply, so this seems to be the least intrusive way. Here is how it may look:
elementDef[] := Element[x_, list_List] := MemberQ[list, x];
ClearAll[elemExec];
SetAttributes[elemExec, HoldAll];
elemExec[code_] := Block[{Element}, elementDef[]; code];
Example of use:
In[10]:= elemExec[Element[1,{1,2,3}]]
Out[10]= True
Edit:
If you need to automate the use of Block, here is an example package to show one way how this can be done:
BeginPackage["Test`"]
var;
f1;
f2;
Begin["`Private`"];
(* Implementations of your functions *)
var = 1;
f1[x_, y_List] := If[Element[x, y], x^2];
f2[x_, y_List] := If[Element[x, y], x^3];
elementDef[] := Element[x_, list_List] := MemberQ[list, x];
(* The following part of the package is defined at the start and you don't
touch it any more, when adding new functions to the package *)
mainContext = StringReplace[Context[], x__ ~~ "Private`" :> x];
SetAttributes[elemExec, HoldAll];
elemExec[code_] := Block[{Element}, elementDef[]; code];
postprocessDefs[context_String] :=
Map[
ToExpression[#, StandardForm,
Function[sym,DownValues[sym] =
DownValues[sym] /.
Verbatim[RuleDelayed][lhs_,rhs_] :> (lhs :> elemExec[rhs])]] &,
Select[Names[context <> "*"], ToExpression[#, StandardForm, DownValues] =!= {} &]];
postprocessDefs[mainContext];
End[]
EndPackage[]
You can load the package and look at the DownValues for f1 and f2, for example:
In[17]:= DownValues[f1]
Out[17]= {HoldPattern[f1[Test`Private`x_,Test`Private`y_List]]:>
Test`Private`elemExec[If[Test`Private`x\[Element]Test`Private`y,Test`Private`x^2]]}
The same scheme will also work for functions not in the same package. In fact, you could separate
the bottom part (code-processing package) to be a package on its own, import it into any other
package where you want to inject Block into your functions' definitions, and then just call something like postprocessDefs[mainContext], as above. You could make the function which makes definitions inside Block (elementDef here) to be an extra parameter to a generalized version of elemExec, which would make this approach more modular and reusable.
If you want to be more selective about the functions where you want to inject Block, this can also be done in various ways. In fact, the whole Block-injection scheme can be made cleaner then, but it will require slightly more care when implementing each function, while the above approach is completely automatic. I can post the code which will illustrate this, if needed.
One more thing: for the less intrusive nature of this method you pay a price - dynamic scope (Block) is usually harder to control than lexically-scoped constructs. So, you must know exactly the parts of evaluation stack where you want that to apply. For example, I would hesitate to inject Block into a definition of a higher order function, which takes some functions as parameters, since those functions may come from code that assumes other definitions (like for example Combinatorica` functions relying on overloaded Element). This is not a big problem, just requires care.
The bottom line of this seems to be: try to avoid overloading built-ins if at all possible. In this case you faced this definitions clash yourself, but it would be even worse if the one who faces this problem is a user of your package (may be yourself a few months later), who wants to combine your package with another one (which happens to overload same system functions as yours). Of course, it also depends on who will be the users of your package - only yourself or potentially others as well. But in terms of design, and in the long term, you may be better off assuming the latter scenario from the start.
To remove Combinatorica's definition, use Unset or the equivalent form =.. The pattern to unset you can grab from the Information output you show in the question:
Unprotect[Element];
Element[a_List, {index___}] =.
Protect[Element];
The worry would be, of course, that Combinatorica depends internally on this ill-conceived redefinition, but you have reason to believe this to not be the case as the Information output from the redefined Element says:
The use of the function
Element in Combinatorica is now
obsolete, though the function call
Element[a, p] still gives the pth
element of nested list a, where p is a
list of indices.
HTH
I propose an entirely different approach than removing Element from DownValues. Simply use the full name of the Element function.
So, if the original is
System`Element[]
the default is now
Combinatorica`Element[]
because of loading the Combinatorica Package.
Just explicitly use
System`Element[]
wherever you need it. Of course check that System is the correct Context using the Context function:
Context[Element]
This approach ensures several things:
The Combinatorica Package will still work in your notebook, even if the Combinatorica Package is updated in the future
You wont have to redefine the Element function, as some have suggested
You can use the Combinatorica`Element function when needed
The only downside is having to explicitly write it every time.
Is there any way to get at the actual messages generated during the evaluation of an expression in Mathematica? Say I'm numerically solving an ODE and it blows up, like so
In[1] := sol = NDSolve[{x'[t] == -15 x[t], x[0] == 1}, x, {t, 0, 1},
Method -> "ExplicitEuler"];
In this case, I'll get the NDSolve::mxst error, telling me the maximum number of 10000 steps was reached at t == 0.08671962566152185. Now, if I look at the $MessageList variable, I only receive the message name; in particular, the information about the value of t where NDSolve decided to quit has been lost.
Now, I can always get that information from sol using the InterpolatingFunctionDomain function from one of the standard add-on packages, but if I can somehow pull it out of the message, it would be quite helpful.
You might be able to use $MessagePrePrint to set up a function which would store away each of the messages for later retrieval.
I don't know if this will work, but if the only thing you want to know are the values of specific parameters at the point of error then a kludgy way of getting them would be to define those variables with dummy values globally. This works with loop counters, but I don't know if it works from within NDSolve. Another kludge would be to make t Dynamic and have an evaluated cell with t.
A more elegant (and probably the correct) approach would be to use Reap and Sow.