Relevant background info
I've built a little software that can be customized via a config file. The config file is parsed and translated into a nested environment structure (e.g. .HIVE$db = an environment, .HIVE$db$user = "Horst", .HIVE$db$pw = "my password", .HIVE$regex$date = some regex for dates etc.)
I've built routines that can handle those nested environments (e.g. look up value "db/user" or "regex/date", change it etc.). The thing is that the initial parsing of the config files takes a long time and results in quite a big of an object (actually three to four, between 4 and 16 MB). So I thought "No problem, let's just cache them by saving the object(s) to .Rdata files". This works, but "loading" cached objects makes my Rterm process go through the roof with respect to RAM consumption (over 1 GB!!) and I still don't really understand why (this doesn't happen when I "compute" the object all anew, but that's exactly what I'm trying to avoid since it takes too long).
I already thought about maybe serializing it, but I haven't tested it as I would need to refactor my code a bit. Plus I'm not sure if it would affect the "loading back into R" part in just the same way as loading .Rdata files.
Question
Can anyone tell me why loading a previously computed object has such effects on memory consumption of my Rterm process (compared to computing it in every new process I start) and how best to avoid this?
If desired, I will also try to come up with an example, but it's a bit tricky to reproduce my exact scenario. Yet I'll try.
Its likely because the environments you are creating are carrying around their ancestors. If you don't need the ancestor information then set the parents of such environments to emptyenv() (or just don't use environments if you don't need them).
Also note that formulas (and, of course, functions) have environments so watch out for those too.
If it's not reproducible by others, it will be hard to answer. However, I do something quite similar to what you're doing, yet I use JSON files to store all of my values. Rather than parse the text, I use RJSONIO to convert everything to a list, and getting stuff from a list is very easy. (You could, if you want, convert to a hash, but it's nice to have layers of nested parameters.)
See this answer for an example of how I've done this kind of thing. If that works out for you, then you can forego the expensive translation step and the memory ballooning.
(Taking a stab at the original question...) I wonder if your issue is that you are using an environment rather than a list. Saving environments might be tricky in some contexts. Saving lists is no problem. Try using a list or try converting to/from an environment. You can use the as.list() and as.environment() functions for this.
Related
I am an embedded engineer and I have never worked with neither windows nor visual basic.
For my current task I have to maintain and improve a test system running on Windows, written in Visual Studio, C#(also have no experience with) .
This project uses some libraries written in visual basic(all legacy code). And I detect a problem in there. I cannot copy the code directly in here but because of legal bindings but it is something like that:
'getter()
dim temp as byte = global_data
Array.reverse(temp);
...
This is a getter function. Since there is a reverse inside, the return of this function is different after each call because when temp changed, global_data is also changed. And I can get the real value only after odd number of calls. Previous handler told me to call function only once or three times... I think this is stupid and changed it by adding a .clone() like this:
dim temp as byte = global_data.clone()
Array.reverse(temp);
And it worked :)
There are a lot of functions like this so I'm gonna make similar adjustments to them too.
But since I am not familiar with the dynamics of this system, I am afraid to face with a problem later. For example can making multiple number of clones consume my RAM? Can those clones be destroyesd? If yes, do I have to destroy them? How?
Or are there any other possible problems?
And is there an other way to do this?
Thanks in advance!
To answer your question, no there is nothing wrong with calling Clone multiple times.
The cloned byte arrays will take up memory as long as they are referenced, but that isn't unique to the byte array being cloned. Presumably that cloned byte array is being passed to other methods. Once those methods are executed the array will be eligible for garbage collection, and the system will take care of it. If this code runs very very frequently, there might be better approaches that are more efficient than allocating and eventual garbage collection of those arrays, but you won't "break" anything using the Clone over an over.
For variables of basic type, clone method copies its value, which requires the stack to allocate space for it.
Value type allocates memory in the stack. They have their own life cycle, so they are automatically allocated and released without management. So you do not have to worry about taking a lot of memory, calling it many times will not cause trouble.
As I understand, MATLAB cannot use pass by reference when sending arguments to other functions. I am doing audio processing, and I frequently have to pass waveforms as arguments into functions, and because MATLAB uses pass by value for these arguments, it really eats up a lot of RAM when I do this.
I was considering using global variables as a method to pass my waveforms into functions, but everywhere I read there seems to be a general opinion that this is a bad idea, for organization of code, and potentially performance issues... but I haven't really read any detailed answers on how this might impact performance...
My question: What are the negative impacts of using global variables (with sizes > 100MB) to pass arguments to other functions in MATLAB, both in terms of 1) performance and 2) general code organization and good practice.
EDIT: From #Justin's answer below, it turns out MATLAB does on occasion use pass by reference when you do not modify the argument within the function! From this, I have a second related question about global variable performance:
Will using global variables be any slower than using pass by reference arguments to functions?
MATLAB does use pass by reference, but also uses copy-on-write. That is to say, your variable will be passed by reference into the function (and so won't double up on RAM), but if you change the variable within the the function, then MATLAB will create a copy and change the copy (leaving the original unaffected).
This fact doesn't seem to be too well known, but there's a good post on Loren's blog discussing it.
Bottom line: it sounds like you don't need to use global variables at all (which are a bad idea as #Adriaan says).
While relying on copy on write as Justin suggested is typically the best choice, you can easily implement pass by reference. With Matlab oop being nearly as fast as traditional functions in Matlab 2015b or newer, using handle is a reasonable option.
I encountered an interesting use case of a global variable yesterday. I tried to parallellise a piece of code (1200 lines, multiple functions inside the main function, not written by me), using parfor.
Some weird errors came out and it turned out that this piece of code wrote to a log file, but used multiple functions to write to the log file. Rather than opening and closing the relevant log file every time a function wanted to write to it, which is very slow, the file ID was made global, so that all write-functions could access it.
For the serial case this made perfect sense, but when trying to parallellise this, using global apparently breaks the scope of a worker instance as well. So suddenly we had 4 workers all trying to write into the same log file, which resulted in some weird errors.
So all in all, I maintain my position that using global variables is generally a bad idea, although I can see its use in specific cases, provided you know what you're doing.
Using global variables in Matlab may increase performance alot. This is because you can avoid copying of data in some cases.
Before attempting to gain such performance tweaks, think carefully of the cost to your project, in terms of the many drawbacks that global variables come with. There are also pitfalls to using globals with bad consequences to performance, and those may be difficult to avoid(although possible). Any code that is littered with globals tend to be difficult to comprehend.
If you want to see globals in use for performance, you can look at this real-time toolbox for optical flow that I made. This is the only project in native Matlab that is capable of real-time optical flow that I know of. Using globals was one of the reasons this was doable. It is also a reason to why the code is quite difficult to grasp: Globals are evil.
That globals can be used this way is not a way to argue for their use, rather it should be a hint that something should be updated with Matlabs unflexible notions of workspace and inefficient alternatives to globals such as guidata/getappdata/setappdata.
I would like to ask a very general question about a technical concept of which I do not know whether it exists or whether it is feasible at all.
The idea is the following:
I have an object in Garbage Collected language (e.g. C# or Java). The objects may itself contain several objects but there is no reference to any other objects that are not sub-element of the objects (or the object itself).
Theoretically it would be possible to get the memory used by this object which is most likely not a connected piece. Because I have some knowledge about the objects I can find all reference variables/properties and pointers that at the end point to another piece of the memory (probably indirectly, depending on the implementation of the programming language and virtual machine). I can take this pieces of memory combining them to a bigger piece of memory (correcting the references/pointers so that they are still intact). This piece of memory, basically bytes, could be written to a storage for example a database or a redis cache. On another machine I could theoretically load this object again an put it into the memory of the virtual machine (maybe again correct the references/pointers if they are absolute and not relative). Then I should have the same object on the other VM. The object can as complicated as I want, may also contain events or whatever and I would be able to get the state of the object transfered to anther VM (running on another computer). The only condition is that it would not contain references to something outside the objects. And of course I have to know the class type of the object on the other VM.
I ask this question because I want to share the state of an object and I think all this serialization work is just an overhead and it would be very simple if I could just freeze the memory and transport to another VM.
Is something like this possible, I'd say yes, though it might be complicated. maybe it is not possible with some VM's due to their architecture. Does something like this exist in any programming language? Maybe even in non garbage collected languages?
NOTE: I am not sure what tags should be added to this question except from programming-language, also I am not sure if there might be a better place for such a question. So please forgive me.
EDIT:
Maybe the concept can be compared to the initrd on Linux or hibernation in general.
you will have to collect all references to other objects. including graphs of objects (cycles) without duplications. it would require some kind of 'stop the world' at least for the serializing thread. it's complicated to do effectively but possible - native serialization mechanisms in many languages (java) are doing it for the developer.
you will need some kind of VM to abstract from the byte order in different hardware architectures.
you will have to detach object from any kind of environment. you can't pass objects representing threads, files handles, sockets etc. how will you detect it?
in nowadays systems memory is virtual so it will be impossible to simply copy addresses from one machine to another - you will have to translate them
objects are not only data visible to developer, it's also structure, information of sandboxing, permissions, superclasses, what method/types were already loaded and which are still not loaded because of optimalizations and lazy loading, garbage collector metadata etc
version of your object/class. on one machine class A can be created from source ver 1 but on another machine there allready might be objects of class A built from source of version 2
take performacne into consideration. will it be faster then old-school serialization? what benefits will it have?
and probably many more things none of us thought about
so: i've never heard of such solution. it seems theoretically doable but for some reason no one have ever done that. everyone offers plain old programmatic serialization. maybe you discover new, better way but keep in mind you'll be going against the crowd
I'm working on a third-party program that aggregates data from a bunch of different, existing Windows programs. Each program has a mechanism for exporting the data via the GUI. The most brain-dead approach would have me generate extracts by using AutoIt or some other GUI manipulation program to generate the extractions via the GUI. The problem with this is that people might be interacting with the computer when, suddenly, some automated program takes over. That's no good. What I really want to do is somehow have a program run once a day and silently (i.e. without popping up any GUIs) export the data from each program.
My research is telling me that I need to hook each application (assume these applications are always running) and inject a custom DLL to trigger each export. Am I remotely close to being on the right track? I'm a fairly experienced software dev, but I don't know a whole lot about reverse engineering or hooking. Any advice or direction would be greatly appreciated.
Edit: I'm trying to manage the availability of a certain type of professional. Their schedules are stored in proprietary systems. With their permission, I want to install an app on their system that extracts their schedule from whichever system they are using and uploads the information to a central server so that I can present that information to potential clients.
I am aware of four ways of extracting the information you want, both with their advantages and disadvantages. Before you do anything, you need to be aware that any solution you create is not guaranteed and in fact very unlikely to continue working should the target application ever update. The reason is that in each case, you are relying on an implementation detail instead of a pre-defined interface through which to export your data.
Hooking the GUI
The first way is to hook the GUI as you have suggested. What you are doing in this case is simply reading off from what an actual user would see. This is in general easier, since you are hooking the WinAPI which is clearly defined. One danger is that what the program displays is inconsistent or incomplete in comparison to the internal data it is supposed to be representing.
Typically, there are two common ways to perform WinAPI hooking:
DLL Injection. You create a DLL which you load into the other program's virtual address space. This means that you have read/write access (writable access can be gained with VirtualProtect) to the target's entire memory. From here you can trampoline the functions which are called to set UI information. For example, to check if a window has changed its text, you might trampoline the SetWindowText function. Note every control has different interfaces used to set what they are displaying. In this case, you are hooking the functions called by the code to set the display.
SetWindowsHookEx. Under the covers, this works similarly to DLL injection and in this case is really just another method for you to extend/subvert the control flow of messages received by controls. What you want to do in this case is hook the window procedures of each child control. For example, when an item is added to a ComboBox, it would receive a CB_ADDSTRING message. In this case, you are hooking the messages that are received when the display changes.
One caveat with this approach is that it will only work if the target is using or extending WinAPI controls.
Reading from the GUI
Instead of hooking the GUI, you can alternatively use WinAPI to read directly from the target windows. However, in some cases this may not be allowed. There is not much to do in this case but to try and see if it works. This may in fact be the easiest approach. Typically, you will send messages such as WM_GETTEXT to query the target window for what it is currently displaying. To do this, you will need to obtain the exact window hierarchy containing the control you are interested in. For example, say you want to read an edit control, you will need to see what parent window/s are above it in the window hierarchy in order to obtain its window handle.
Reading from memory (Advanced)
This approach is by far the most complicated but if you are able to fully reverse engineer the target program, it is the most likely to get you consistent data. This approach works by you reading the memory from the target process. This technique is very commonly used in game hacking to add 'functionality' and to observe the internal state of the game.
Consider that as well as storing information in the GUI, programs often hold their own internal model of all the data. This is especially true when the controls used are virtual and simply query subsets of the data to be displayed. This is an example of a situation where the first two approaches would not be of much use. This data is often held in some sort of abstract data type such as a list or perhaps even an array. The trick is to find this list in memory and read the values off directly. This can be done externally with ReadProcessMemory or internally through DLL injection again. The difficulty lies mainly in two prerequisites:
Firstly, you must be able to reliably locate these data structures. The problem with this is that code is not guaranteed to be in the same place, especially with features such as ASLR. Colloquially, this is sometimes referred to as code-shifting. ASLR can be defeated by using the offset from a module base and dynamically getting the module base address with functions such as GetModuleHandle. As well as ASLR, a reason that this occurs is due to dynamic memory allocation (e.g. through malloc). In such cases, you will need to find a heap address storing the pointer (which would for example be the return of malloc), dereference that and find your list. That pointer would be prone to ASLR and instead of a pointer, it might be a double-pointer, triple-pointer, etc.
The second problem you face is that it would be rare for each list item to be a primitive type. For example, instead of a list of character arrays (strings), it is likely that you will be faced with a list of objects. You would need to further reverse engineer each object type and understand internal layouts (at least be able to determine offsets of primitive values you are interested in in terms of its offset from the object base). More advanced methods revolve around actually reverse engineering the vtable of objects and calling their 'API'.
You might notice that I am not able to give information here which is specific. The reason is that by its nature, using this method requires an intimate understanding of the target's internals and as such, the specifics are defined only by how the target has been programmed. Unless you have knowledge and experience of reverse engineering, it is unlikely you would want to go down this route.
Hooking the target's internal API (Advanced)
As with the above solution, instead of digging for data structures, you dig for the internal API. I briefly covered this with when discussing vtables earlier. Instead of doing this, you would be attempting to find internal APIs that are called when the GUI is modified. Typically, when a view/UI is modified, instead of directly calling the WinAPI to update it, a program will have its own wrapper function which it calls which in turn calls the WinAPI. You simply need to find this function and hook it. Again this is possible, but requires reverse engineering skills. You may find that you discover functions which you want to call yourself. In this case, as well as being able to locate the location of the function, you have to reverse engineer the parameters it takes, its calling convention and you will need to ensure calling the function has no side effects.
I would consider this approach to be advanced. It can certainly be done and is another common technique used in game hacking to observe internal states and to manipulate a target's behaviour, but is difficult!
The first two methods are well suited for reading data from WinAPI programs and are by far easier. The two latter methods allow greater flexibility. With enough work, you are able to read anything and everything encapsulated by the target but requires a lot of skill.
Another point of concern which may or may not relate to your case is how easy it will be to update your solution to work should the target every be updated. With the first two methods, it is more likely no changes or small changes have to be made. With the second two methods, even a small change in source code can cause a relocation of the offsets you are relying upon. One method of dealing with this is to use byte signatures to dynamically generate the offsets. I wrote another answer some time ago which addresses how this is done.
What I have written is only a brief summary of the various techniques that can be used for what you want to achieve. I may have missed approaches, but these are the most common ones I know of and have experience with. Since these are large topics in themselves, I would advise you ask a new question if you want to obtain more detail about any particular one. Note that in all of the approaches I have discussed, none of them suffer from any interaction which is visible to the outside world so you would have no problem with anything popping up. It would be, as you describe, 'silent'.
This is relevant information about detouring/trampolining which I have lifted from a previous answer I wrote:
If you are looking for ways that programs detour execution of other
processes, it is usually through one of two means:
Dynamic (Runtime) Detouring - This is the more common method and is what is used by libraries such as Microsoft Detours. Here is a
relevant paper where the first few bytes of a function are overwritten
to unconditionally branch to the instrumentation.
(Static) Binary Rewriting - This is a much less common method for rootkits, but is used by research projects. It allows detouring to be
performed by statically analysing and overwriting a binary. An old
(not publicly available) package for Windows that performs this is
Etch. This paper gives a high-level view of how it works
conceptually.
Although Detours demonstrates one method of dynamic detouring, there
are countless methods used in the industry, especially in the reverse
engineering and hacking arenas. These include the IAT and breakpoint
methods I mentioned above. To 'point you in the right direction' for
these, you should look at 'research' performed in the fields of
research projects and reverse engineering.
I've been using ReadDirectoryChangesW to monitor a particular portion of the file system. It rather nicely provides a partial pathname to the file or directory which changed along with a clue about the nature of the change. This may have spoiled me.
I also need to monitor a particular portion of the registry, but it looks as if RegNotifyChangeKeyValue is very coarse. It will tell me that something under the given key changed, but it doesn't seem to want to tell me what that something might have been. Bummer!
The portion of the registry in question is arbitrarily deep, so enumerating all the sub-keys and calling RegNotifyChangeKeyValue for each probably isn't a hot idea because I'll eventually end up having to overcome MAXIMUM_WAIT_OBJECTS. Plus I'd have to adjust the set of keys I'd passed to RegNotifyChangeKeyValue, which would be a fair amount of effort to do without enumerating the sub-keys every time, which would defeat a fair amount of the purpose.
Any ideas?
Unfortunately, yes. You probably have to cache all the values of interest to your code, and update this cache yourself whenever you get a change trigger, or else set up multiple watchers, one on each of the individual data items of interest. As you noted the second solution gets unwieldy very quickly.
If you can implement the required code in .Net you can get the same effect more elegantly via RegistryEvent and its subclasses.