Windows 7. Git public key configuration - windows

I have followed the instructions here: http://help.github.com/win-set-up-git/ to set up git on my windows 7 machine.
I can use "git bash" and run commands. I am prompted for my key's pass phrase and can successfully connect. E.g.:
$git push -u origin master
Enter passphrase for key '/c/Users/mbj/.ssh/id_rsa':
Everything up-to-date
Also this:
$ ssh -T git#github.com
Enter passphrase for key '/c/Users/mbj/.ssh/id_rsa':
Hi markbrenigjones! You've successfully authenticated, but GitHub does not provi
de shell access.
$ which ssh
/bin/ssh
However, when I open a regular windows command prompt and run the same command, I get this:
C:\util\meta_vimrc>git push
Permission denied (publickey).
fatal: The remote end hung up unexpectedly
Also this:
C:\util\meta_vimrc>ssh -T git#github.com
Permission denied (publickey).
C:\util\meta_vimrc>which ssh
C:\Program Files (x86)\Git\bin\ssh.exe
How do I get this working from the non "git bash" prompt?

Perhaps the program has no idea where your HOME directory is when running from the Windows cmd.exe interpreter. For this to work, the ssh configuration directory with your key has to be found, namely /c/Users/mbj/.ssh.
Set this by running:
set HOME=C:\Users\mbj\

What works for me is to run PuTTY's Pageant.exe and add your private key to it. Then plink.exe knows where to find the key no matter what.

Related

Git for Windows: Cannot add host to known_hosts. Wrong user directory

Git for Windows worked fine with SSH authentication. However, the SSH sever signature has changed. I deleted the ~/.ssh/known_hosts file in the hope that ssh will recreate it.
However, when I try to push to the remote via SSH, I get the following message:
Let's assume my Windows username is "abc".
$ git push
Could not create directory '/home/abc/.ssh' (No such file or directory).
Failed to add the host to the list of known hosts (/home/abc/.ssh/known_hosts).
git#my_bitbucket.hu: Permission denied (publickey).
fatal: Could not read from remote repository.
On Windows I don't have the /home/abc directory. $HOME is set to "/c/Users/abc".
How can I fix this? I tried several solutions from On windows, could not create directory '/home/<username>/.ssh', but nothing worked.
In the Wondows CMD %HOME% and %USERPROFILE% are set to "/c/Users/abc". Why is ssh trying to touch the file under "/home/abc/.ssh"?
Try the same from a CMD session (no git bash), with:
%HOME% and %USERPROFILE% are set to "C:\Users\abc"
%PATH% set to:
set PATH=C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\
set "GH=C:\Program Files\Git"
set "PATH=%GH%\bin;%GH%\cmd;%GH%\usr\bin;%GH%\mingw64\bin;%GH%\mingw64\libexec\git-core;%PATH%"
no SSH environment variable set ( check with set|grep -i ssh)
Then try again, from that same CMD session, again without bash.

How to clone repository using SSH in EC2 userdata? [duplicate]

I am trying to connect to a remote Git repository that resides on my web server and clone it to my machine.
I am using the following format for my command:
git clone ssh://username#domain.example/repository.git
This has worked fine for most of my team members. Usually after running this command Git will prompt for the user's password, and then run the cloning. However, when running on one of my machines I get the following error:
Host key verification failed.
fatal: Could not read from remote
repository.
We are not using SSH keys to connect to this repository, so I'm not sure why Git is checking for one on this particular machine.
As I answered previously in Cloning git repo causes error - Host key verification failed. fatal: The remote end hung up unexpectedly, add GitHub to the list of known hosts:
ssh-keyscan -t rsa github.com >> ~/.ssh/known_hosts
You are connecting via the SSH protocol, as indicated by the ssh:// prefix on your clone URL. Using SSH, every host has a key. Clients remember the host key associated with a particular address and refuse to connect if a host key appears to change. This prevents man in the middle attacks.
The host key for domain.example has changed. If this does not seem fishy to you, remove the old key from your local cache by editing ${HOME}/.ssh/known_hosts to remove the line for domain.example or letting an SSH utility do it for you with
ssh-keygen -R domain.example
From here, record the updated key either by doing it yourself with
ssh-keyscan -t rsa domain.example >> ~/.ssh/known_hosts
or, equivalently, let ssh do it for you next time you connect with git fetch, git pull, or git push (or even a plain ol’ ssh domain.example) by answering yes when prompted
The authenticity of host 'domain.example (a.b.c.d)' can't be established.
RSA key fingerprint is XX:XX:...:XX.
Are you sure you want to continue connecting (yes/no)?
The reason for this prompt is domain.example is no longer in your known_hosts after deleting it and presumably not in the system’s /etc/ssh/ssh_known_hosts, so ssh has no way to know whether the host on the other end of the connection is really domain.example. (If the wrong key is in /etc, someone with administrative privileges will have to update the system-wide file.)
I strongly encourage you to consider having users authenticate with keys as well. That way, ssh-agent can store key material for convenience (rather than everyone having to enter her password for each connection to the server), and passwords do not go over the network.
I had the similar issue, but, using SSH keys. From Tupy's answer, above, I figured out that the issue is with known_hosts file not being present or github.com not being present in the list of known hosts. Here are the steps I followed to resolve it -
mkdir -p ~/.ssh
ssh-keyscan -t rsa github.com >> ~/.ssh/known_hosts
ssh-keygen -t rsa -C "user.email"
open the public key with this command $ cat ~/.ssh/id_rsa.pub and copy it.
Add the id_rsa.pub key to SSH keys list on your GitHub profile.
This is happening because github is not currently in your known hosts.
You should be prompted to add github to your known hosts. If this hasn't happened, you can run ssh -T git#github.com to receive the prompt again.
For me, I just had to type "yes" at the prompt which asks "Are you sure you want to continue connecting (yes/no)?" rather than just pressing Enter.
If you are in office intranet (otherwise dangerous) which is always protected by firewalls simply have the following lines in your ~/.ssh/config.
Host *
StrictHostKeyChecking no
UserKnownHostsFile=/dev/null
When asked:
Are you sure you want to continue connecting (yes/no)?
Type yes as the response
That is how I solved my issue. But if you try to just hit the enter button, it won't work!
I got the same problem on a newly installed system, but this was a udev problem. There was no /dev/tty node, so I had to do:
mknod -m 666 /dev/tty c 5 0
What worked for me was to first add my SSH key of the new computer, I followed these instructions from GitLab - add SSH key. Note that since I'm on Win10, I had to do all these commands in Git Bash on Windows (it didn't work in regular DOS cmd Shell).
Then again in Git Bash, I had to do a git clone of the repo that I had problems with, and in my case I had to clone it to a different name since I already had it locally and didn't want to lose my commits. For example
git clone ssh://git#gitServerUrl/myRepo.git myRepo2
Then I got the prompt to add it to known hosts list, the question might be this one:
Are you sure you want to continue connecting (yes/no)?
I typed "yes" and it finally worked, you should typically get a message similar to this:
Warning: Permanently added '[your repo link]' (ECDSA) to the list of known hosts.
Note: if you are on Windows, make sure that you use Git Bash for all the commands, this did not work in regular cmd shell or powershell, I really had to do this in Git Bash.
Lastly I deleted the second clone repo (myRepo2 in the example) and went back to my first repo and I could finally do all the Git stuff like normal in my favorite editor VSCode.
When the remote server wants to connect to the private repo, it would authenticate via ssh.
Create the private-public key pair with ssh-keygen or if you already have the public-private key. copy&paste the public key in the Settings of the private repo.
YourPrivateRepo -> Settings -> Deploy Keys -> Add deploy key -> Paste the public key.
Now the remote server would be able to connect to the private repo.
NOTE: The deploy keys has access only for reading the repo. Need to explicitly allow write access.
If you are using git for Windows.
Open the git GUI.
Open the local git repository in git GUI.
Add the remote or push if the remote already exists.
Answer "yes" to the question about whether you want to continue.
The GUI client adds the key for you to ~/.ssh/known_hosts. This is easier to remember if you don't do it often and also avoids the need to use the git command line (the standard Windows command lines don't have the ssh-keyscan executable.
The solutions mentioned here are great, the only missing point is, what if your public and private key file names are different than the default ones?
Create a file called "config" under ~/.ssh and add the following contents
Host github.com
IdentityFile ~/.ssh/github_id_rsa
Replace github_id_rsa with your private key file.
I was facing the same error inside DockerFile during build time while the image was public. I did little modification in Dockerfile.
RUN git clone https://github.com/kacole2/express-node-mongo-skeleton.git /www/nodejs
This would be because using the git#github.com:... syntax ends up > using SSH to clone, and inside the container, your private key is not > available. You'll want to use RUN git clone > https://github.com/edenhill/librdkafka.git instead.
Check permissions on the known_hosts file as well - both the user's (~/.ssh/known_hosts) and the global one (/etc/ssh/ssh_known_hosts).
In my case the old host was in /etc/ssh/ssh_known_hosts. When I removed it as root with sudo ssh-keygen -f /etc/ssh/ssh_known_hosts -R THE_HOST it changed permissions on that file to 0600, so SSHing to THE_HOST as root worked, but for any other user it failed with "Host key verification failed". The fix was:
sudo chmod 644 /etc/ssh/ssh_known_hosts
One small addition to Tupy's answer, you may need to add the port number for your repository host:
ssh-keyscan -p 8888 -t rsa domain.example >> ~/.ssh/known_hosts
If you have another machine that does have remote access you can find the port number by viewing ~/.ssh/known_hosts:
[user]$ less ~/.ssh/known_hosts
[domain.example]:8888,[000.00.000.000]:8888 ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCi...
Its means your remote host key was changed (May be host password change),
Your terminal suggested to execute this command as root user
$ ssh-keygen -f "/root/.ssh/known_hosts" -R [www.website.net]
You have to remove that host name from hosts list on your pc/server. Copy that suggested command and execute as a root user.
$ sudo su // Login as a root user
$ ssh-keygen -f "/root/.ssh/known_hosts" -R [www.website.net] // Terminal suggested command execute here
Host [www.website.net]:4231 found: line 16 type ECDSA
/root/.ssh/known_hosts updated.
Original contents retained as /root/.ssh/known_hosts.old
$ exit // Exist from root user
Try Again, Hope this works.
You kan use https instead of ssh for git clone or git pull or git push
ex:
git clone https://github.com/user/repo.git
Reason seems to be that the public key of the remote host is not stored or different from the stored one. (Be aware of security issues, see Greg Bacon's answer for details.)
I was used to git clone prompting me in this case:
The authenticity of host 'host.net (10.0.0.42)' can't be established.
ECDSA key fingerprint is 00:00:00:00:00:00:00:00:00:00:00:00:00:00:00:00.
Are you sure you want to continue connecting (yes/no)?
Not sure, why this error is thrown instead. Could be the configuration of your shell or the git SSH command.
Anyhow, you can get the same prompt by running ssh user#host.net.
A other alternative worked for me, instead of cloning the SSH link
git#gitlab.company.net:upendra/mycode.git
there is a option to select http link
http://gitlab.company.net:8888/upendra/mycode.git
So I used http link to clone for Visual studio and it worked for me
If you are not using a Windows Session to update the code, and you use PortableGit, you need to set the HOMEPATH environment variable before running the git command.
This example fits better for other use case, but I think it is a good of proof-of-concept for this post.
$env:HOMEPATH="\Users\Administrator";C:\path\to\PortableGit\bin\git.exe -C C:\path\to\repository.git pull'
Pushing to Git returning Error Code 403 fatal: HTTP request failed
Check if there is Billing issue.
Google Cloud stops uploading files to https://source.cloud.google.com/
I got this problem went away after Payment issue was fixed.
But did not change the Keys.
Thanks
Dashboard > Manage Jenkins > Configure Global Security > Git Host Key Verification Configuration.
Then in Host Key Verification Strategy select Accept first connection.
You can use your "git url" in 'https" URL format in the Jenkinsfile or wherever you want.
git url: 'https://github.com/jglick/simple-maven-project-with-tests.git'
Alternatively, if you're using MSYS2 terminals (on Windows*) and a passphrase, it might be that the terminal does not prompt the 'Enter passphrase' properly, thus denying access to SSH.
If you're on Windows, you can instead use the Git Bash or Powershell to get the prompt and properly connect. (I'm currently looking for a solution for MSYS.)
*Not sure if relevant.
Problem:
Host key verification failed.
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
Solution: I've checked all the settings and also checked the key settings in GitHub. Finally, I changed the Git URL from "git#github.com:palvsv/travelo-moon.git" to "https://github.com/palvsv/travelo-moon.git" in .config file "yourprojectdirectory/.git/config" and it works.
for me, I just rename the "known_hosts" file to "known_hosts.del" for backup. and then rerun git clone xxx and type "yes". I will create new "known_hosts"
Just type 'yes' and press enter this should work
When the terminal shows:
Are you sure you want to continue connecting (yes/no)?
DO NOT I repeat DO NOT directly pressed Enter.
You MUST TYPE yes first in the terminal, then press Enter.
I had the similar issue, unfortunately I used the GitExtensions HMI and forgot that I wrote a passphrase.
With HMI.... forget it ! Do not enter passphrase when you generate your key !
I got this message when I tried to git clone a repo that was not mine. The fix was to fork and then clone.

git clone with SSH only working in Git Bash not on Windows CMD

So, I've followed this tutorial on how to Setup SSH for github with Windows CMD and all was working fine until I went to clone a repo with
git clone git#github.com:{myusername}/{myrepo}.git
Where I get
git#github.com: Permission denied (publickey).
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
Even when I run ssh -T git#github.com I get the expected message telling me I'm authenticated.
After scratching my brain for a while, I decided to try it on git bash.
First thing I noticed was that running
ssh-add -l
in git bash, I was getting The agent has no identities. but when I run the same command on Windows CMD I get all my SSH keys?
So, after adding my ssh key in git bash I was able to clone my repository.
So, why is it only on git bash I can do this and not on the cmd or powershell? Is it something to do with what seems like they are using different ssh agents? How can I sync them together if that is the case?
Furthermore, when I run the following command
ssh -Tv git#github.com
with the cmd I get
debug1: identity file C:\\Users\\{myuserdirectory}/.ssh/id_rsa type 0
debug1: key_load_public: No such file or directory
but with git bash I get
debug1: identity file /c/Users/{myuserdirectory}/.ssh/id_rsa type 0
Another difference is that in windows cmd I don't get any instances of
debug1: Will attempt key: ....
When I exit git bash and open up another git bash terminal, running ssh-add -l again, it returns The agent has no identities. even after I added it before, it's like it only persists for each session, which also isn't desirable.
Any help with this would be greatly appreciated!
Probably you were right and they were using different ssh-agents. I had exactly the same problem and this answer helped me a lot:
https://stackoverflow.com/a/40720527/6486458
By default git refers to its own ssh in C:\Program Files\Git\usr\bin. I added GIT_SSH environment variable and set it to C:\Windows\System32\OpenSSH\ssh.exe. This prevents inconsistency between the versions of ssh. After that git started to work as expected from both Git Bash and Windows cmd.
From git documentation:
GIT_SSH, if specified, is a program that is invoked instead of ssh
when Git tries to connect to an SSH host. It is invoked like $GIT_SSH [username#]host [-p <port>] <command>.
See also this answer: https://stackoverflow.com/a/8713121/6486458
Looks like your ssh-agent is not running or not recognize your ssh key
try this:
# add the default ~/.ssh keys to the ssh-agent
ssh-add
# restart the ssh-agent
eval $(ssh-agent)
# On windows:
start-ssh-agent
ssh-add
ssh-add adds RSA or DSA identities to the authentication agent, ssh-agent.
When run without arguments, it adds the files ~/.ssh/id_rsa, ~/.ssh/id_dsa and ~/.ssh/identity.
Alternative file names can be given on the command line
There is a weird bug on Windows if you install Git bash. Open Command prompt, and do
ls ~/.ssh
if you find this folder already created, then copy the public and private key from your user folder to this path:
cp C:\Users\username\.ssh\id_* ~/.ssh/
For some reason, windows command prompt creates this path the first time you do a git clone, and after that it just requests for git#gitlab / git#github password.

cmake not able to read ssh keys when it calls 'git' command

I would like to let 'cmake' exporting some files from a git repository with a 'git export' command. Everytime I do that I received an error
Permission denied, please try again.
git#xxxx: Permission denied (publickey,password).
fatal: The remote end hung up unexpectedly
If I do it myself from a DOS command line I am asked a password in a prompt.
As far as I know my ssh keys have been already provided to the network administrator watching for the git repositories.
Do you know why 'cmake' is not able to pick up my ssh keys?
How to prevent asking the password for it?
Below the command I am using
execute_process(
COMMAND git --remote=git+ssh://git#xx/proj.git master source/folder --format=tar.gz > package.tar.gz
RESULT_VARIABLE rv
ERROR_VARIABLE ev
OUTPUT_VARIABLE ov
WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
I think CMake cannot ask for user input, so when invoking the Git command and it asks for a password then the input is empty, which causes your command to fail.
You should use a SSH agent so that SSH is already "aware" of your SSH keys so your Git command does not ask for a password; for example this answer indicates how to use it. Another solution would be to pass your password through an environment variable, but the first solution is more appropriate in my opinion.

Git clone / pull continually freezing at "Store key in cache?"

I'm attempting to clone a repo from my BitBucket account to my Windows 10 laptop (running GitBash). I've completed all of the steps necessary to connect (set up my SSH key, verified by successfully SSHing git#bitbucket.org, etc). However, whenever I attempt to clone a repo, the prompt continually hangs up after confirming that I want to cache Bitbucket's key.
User#Laptop MINGW64 /C/Repos
$ git clone git#bitbucket.org:mygbid/test.git
Cloning into 'test'...
The server's host key is not cached in the registry. You
have no guarantee that the server is the computer you
think it is.
The server's rsa2 key fingerprint is:
ssh-rsa 2048 97:8c:1b:f2:6f:14:6b:5c:3b:ec:aa:46:46:74:7c:40
If you trust this host, enter "y" to add the key to
PuTTY's cache and carry on connecting.
If you want to carry on connecting just once, without
adding the key to the cache, enter "n".
If you do not trust this host, press Return to abandon the
connection.
Store key in cache? (y/n) y
No files are cloned, and the result is an empty repo. Trying to initiate a git pull origin master from this repo also asks to cache the key, then hangs with no feedback. Despite not asking for the key to be cached when I do a test SSH, git operations always ask for the key every time before failing.
With no error messages to work with, I'm really at a loss as to what is wrong. I've tried multiple repos, including very small ones, with no success at all.
I had this problem when cloning a repo on Windows 10 too.
I got around it by using the Putty GUI to SSH to the server in question (in your case: bitbucket.org) then clicked 'Yes' when the prompt asks if you want to save the server key to the cache. Running the clone command again then worked for me!
Open Putty
Type in the Host Name (like bitbucket.org)
Click Open
Click yes in the popup to cache the host key
Close Putty
I managed to get it working by running plink directly, after pageant is running use the plink command directly - plink.exe -agent -v git#github.com then after this git works without hanging.
To do this from powershell open a powershell window and paste in the following:
echo y | & 'C:\Program Files (x86)\GitExtensions\PuTTY\plink.exe' -ssh git#github.com
echo y | & 'C:\Program Files (x86)\GitExtensions\PuTTY\plink.exe' -ssh git#gist.github.com
echo y | & 'C:\Program Files (x86)\GitExtensions\PuTTY\plink.exe' -ssh git#bitbucket.org
or with PuTTY standalone version:
echo y | & 'C:\Program Files (x86)\PuTTY\plink.exe' -ssh git#github.com
echo y | & 'C:\Program Files (x86)\PuTTY\plink.exe' -ssh git#gist.github.com
echo y | & 'C:\Program Files (x86)\PuTTY\plink.exe' -ssh git#bitbucket.org
Also worth knowing is that putty stores known hosts under a registry key:
HKEY_CURRENT_USER\SoftWare\SimonTatham\PuTTY\SshHostKeys
To shortcut the above you could put the following in a .reg file and run it:
Windows Registry Editor Version 5.00
[HKEY_CURRENT_USER\SOFTWARE\SimonTatham\PuTTY\SshHostKeys]
"rsa2#22:github.com"="0x23,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"
"rsa2#22:gist.github.com"="0x23,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"
"rsa2#22:bitbucket.org"="0x23,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"
putty-hosts.reg gist
To workaround this problem I configured GitBash to use plink with -batch option. The option disables all prompts - the plink will terminate without hanging and won't add any key fingerprint to cache.
To add -batch parameter to plink command executed by GitBash you can set a git config option:
git config --global core.sshCommand "plink -batch"
Or set GIT_SSH_COMMAND environment variable.
The output when you cloning a repo from unknown host will be similar to this:
The server's host key is not cached in the registry. You
have no guarantee that the server is the computer you
think it is.
The server's rsa2 key fingerprint is:
ssh-rsa 2048 97:8c:1b:f2:6f:14:6b:5c:3b:ec:aa:46:46:74:7c:40
Connection abandoned.
fatal: Could not read from remote repository.
After this message you can add a key to cache with command:
echo y | plink git#bitbucket.org
REMARK: Please check if plink is in your PATH. Alternatively use UNIX-like path in the GitBash config option, e.g.:
/c/Program\ Files/PuTTY/plink.exe -batch
Even after performing the workaround mentioned in other answers, you may encounter an error like:
FATAL ERROR: Disconnected: No supported authentication methods available (server sent: publickey)
To solve both problems at once, change git bash to use SSH instead of PuTTY by adding the following to your ~/.profile file (C:\Users\<Username>\.profile). If you don't already have this file, then create a new file with this line.
GIT_SSH="/usr/bin/ssh.exe"
Then open a new git bash window and try your git clone or git pull again.
Note that this may require you to create an SSH key if you don't already have one. To do this, follow the instructions on the Bitbucket site.
See this SO question for related info.
In your git bash shell, check for existence of GIT_SSH:
echo $GIT<tab><tab>
If it exists and is set to putty, execute:
unset GIT_SSH
You'll probably want to put this into one of the git bash startup scripts.
This is NOT a universal solution. It worked in our particular case.
It sounds a bit silly, but after trying all of the above, I decided to reinstall Git Bash with default options and it worked.
If you use KiTTY (instead of PuTTY), it has -auto-store-sshkey argument.
So, you can set GIT_SSH_COMMAND (or git config --global core.sshCommand) to something like c:/KiTTY/klink.exe -auto-store-sshkey.
The output still contains information about new key and the question, but it doesn't wait for the answer:
The server's host key is not cached in the registry. You
have no guarantee that the server is the computer you
think it is.
The server's ssh-ed25519 key fingerprint is:
ssh-ed25519 255 2e:65:6a:c8:cf:bf:b2:8b:9a:bd:6d:9f:11:5c:12:16
If you trust this host, enter "y" to add the key to
PuTTY's cache and carry on connecting.
If you want to carry on connecting just once, without
adding the key to the cache, enter "n".
If you do not trust this host, press Return to abandon the
connection.
Store key in cache? (y/n)
Autostore key is on
Default SSH port to connect to is 7999

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