I am now installing a code on my mac.
The code is from here. Look for "Benchmark and Boundary Detection Code" in this page.
In the readme file, it says:
(1) For the image and segmentation reading routines in the Dataset
directory to work, make sure you edit Dataset/bsdsRoot.m to point to
your local copy of the BSDS dataset.
(2) Run 'gmake install' from this directory to build everything. You
should then probably put the lib/matlab directory in your MATLAB path.
(3) Read the Benchmark/README file.
For the 1st step, I did as suggested.
For the 2nd step, I am pretty confused. I ran command gmake install in MATLAB, however, I got:
gmake
Undefined function or variable 'gmake'.
Actually, before running MATLAB, I installed gmake port through macports.
I just did it in terminal, however, this is what I got...
hou229:segbench yaozhongsong$ cd /Users/yaozhongsong/Documents/MATLAB/segbench
hou229:segbench yaozhongsong$ sudo gmake install
gmake[1]: execvp: ../Util/gethosttype: Permission denied
gmake[1]: Entering directory `/Users/yaozhongsong/Documents/MATLAB/segbench/Util'
GNUmakefile-library:26: *** mexSuffix not defined. Stop.
gmake[1]: Leaving directory `/Users/yaozhongsong/Documents/MATLAB/segbench/Util'
hou229:segbench yaozhongsong$
In MATLAB, I also did like this:
!gmake install
/bin/bash: gmake: command not found
How to do the 2nd step in readme file?
Thanks in advance!
#Amro
hou229:segbench yaozhongsong$ cd /Users/yaozhongsong/Documents/MATLAB/segbench
hou229:segbench yaozhongsong$ sudo gmake install
Password:
gmake[1]: execvp: ../Util/gethosttype: Permission denied
gmake[1]: Entering directory `/Users/yaozhongsong/Documents/MATLAB/segbench/Util'
mkdir -p ../lib/matlab
g++ -g -Wall -fPIC -I../include -O3 -DNOBLAS -c Exception.cc -o build//Exception.o
g++ -g -Wall -fPIC -I../include -O3 -DNOBLAS -c String.cc -o build//String.o
g++ -g -Wall -fPIC -I../include -O3 -DNOBLAS -c Random.cc -o build//Random.o
g++ -g -Wall -fPIC -I../include -O3 -DNOBLAS -c Timer.cc -o build//Timer.o
g++ -g -Wall -fPIC -I../include -O3 -DNOBLAS -c Matrix.cc -o build//Matrix.o
Matrix.cc:13:21: error: ieee754.h: No such file or directory
Matrix.cc: In function ‘double nextpow2(double)’:
Matrix.cc:86: error: ‘ieee754_double’ was not declared in this scope
Matrix.cc:86: error: expected `;' before ‘val’
Matrix.cc:87: error: ‘val’ was not declared in this scope
Matrix.cc:88: error: ‘IEEE754_DOUBLE_BIAS’ was not declared in this scope
Matrix.cc: At global scope:
Matrix.cc:48: warning: ‘snan’ defined but not used
Matrix.cc:49: warning: ‘inf’ defined but not used
gmake[1]: *** [build//Matrix.o] Error 1
gmake[1]: Leaving directory `/Users/yaozhongsong/Documents/MATLAB/segbench/Util'
For the "mexSuffix not defined" error, first run mexext inside MATLAB, take that output (I suspect it is mexmaci64), edit the file Util/GNUmakefile-library and add the following at line 24:
mexSuffix := mexmaci64
replace the value with the one you get from mexext
Note: I haven't tested any of this, I am on a Windows machine..
You need to run gmake from the Terminal (command line), not in MATLAB.
Related
I am testing stereo algorithm in MiddleBury Stereo Evaluation
One of step was to compile the tools in code/as follows.
cd code/imageLib
make
cd ..
make
cd ..
In this case, there is error in first make as follows,
$ make
g++ -O3 -W -Wall -g -c -o ImageIOpng.o ImageIOpng.cpp
ImageIOpng.cpp:19:17: fatal error: png.h: No such file or directory
compilation terminated.
make: *** [<builtin>: ImageIOpng.o] Error 1
and, regarding second make,
$ make
g++ -g -O3 -W -Wall -IimageLib ii.cpp -LimageLib -lImg.i686-g -lpng -lz -o ii
/usr/lib/gcc/i686-pc-cygwin/5.4.0/../../../../i686-pc-cygwin/bin/ld: cannot find -lImg.i686-g
/usr/lib/gcc/i686-pc-cygwin/5.4.0/../../../../i686-pc-cygwin/bin/ld: cannot find -lpng
collect2: error: ld returned 1 exit status
make: *** [<builtin>: ii] Error 1
In previous step, make worked fine.
So, what was the problem? I downloaded sample algorithm and did not edit/change contents in any file.
png.h is part of libpng16-devel and the specific include
directory must be added to the include path of your project.
$ cygcheck -l libpng16-devel |grep png.h
/usr/include/libpng16/png.h
I am trying to compile some source code but I presented with the following error output after entering "make":
mpicc -c -O3 -I func_pointer.c
gcc: fatal error: no input files
compilation terminated.
make: *** [func_pointer.o] Error 4
I have seen other threads on this website relating to this error output (1, 2, 3). I was in fact experiencing a similar problem previously, which I think I may have solved, where the "make" command was producing:
make: Circular mod_prec.o <- mod_prec.o dependency dropped.
make: Circular mod_prec.o <- mod_prec.o dependency dropped.
make: Circular mod_prec.o <- mod_prec.o dependency dropped.
/usr/bin/cpp -P -C -traditional -DIFORT -P -C -traditional -DWET_DRY -DMULTIPROCESSOR -DLIMITED_NO -DGCN mod_prec.F > mod_prec.f90
mpif90 -c -O3 -I mod_prec.f90
gfortran: fatal error: no input files
compilation terminated.
make: *** [mod_prec.o] Error 4
I followed the steps suggested on this website, which I think may have addressed that issue (I believe I am progressing further through the makefile). Those steps are as follows:
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ which mpif90
/usr/local/bin/mpif90
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ mpif90 -show
gfortran -I/usr/local/include -pthread -I/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -L/usr/local/lib -lmpi_usempi -lmpi_mpifh -lmpi
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ mpif90 -V
gfortran: error: unrecognized command line option ‘-V’
gfortran: fatal error: no input files
compilation terminated.
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ export MPI_LOC=/usr/local
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ export MPI_INCLUDE="$MPI_LOC"/includedan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ export MPI_LIB="$MPI_LOC"/lib
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ export LD_LIBRARY_PATH=$MPI_LIB:$LD_LIBRARY_PATH
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ export LIBMPI="-pthread -Wl -rpath -Wl -Wl,--enable-new-dtags -lmpi -lmpi_usempi -lmpi_mpifh -lmpi"
With an additional step of:
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ make clean
/bin/rm -f *.o *.mod *.f90
Which brought me to where I am currently. My instinct is that the solution to my current problem will be similar to that of my previous problem. However, I am new to linux/c/fortran so I am not sure I fully follow the previous solution. As such the following commands produce the following output:
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ which mpicc
/usr/local/bin/mpicc
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ mpicc -show
gcc -I/usr/local/include -pthread -Wl,-rpath -Wl,/usr/local/lib -Wl,--enable-new-dtags -L/usr/local/lib -lmpi
dan#Dan-office ~/FVCOM3.2.2/FVCOM_source $ mpicc -V
gcc: error: unrecognized command line option ‘-V’
gcc: fatal error: no input files
compilation terminated.
Have I failed to correctly define some variables which is leading to this problem? I am conscious that this question is becoming rather long but I can add additional information if it is required such as the makefile (this is long though).
Answering my own question after encountering it again whilst compiling FVCOM on a new hard drive. The issue is, as raised by Etan, the -I flag. In the make.inc file uncomment the LIBDIR and INCDIR variables under local install and comment out the same variables directly above.
I installed the protobuf complier following:
Download Protocol Buffers full source from here: http://code.google.com/p/protobuf/downloads/list
Extract it and go to the extraction directory from terminal
1.Run ./configure
2.Run make
3.Run sudo make install
After I run make, the error shows. someone know how to fix it?
Thanks in advance!!
/Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive
Making all in .
Making all in src
/bin/sh ../libtool --tag=CXX --mode=link g++ -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -g -DNDEBUG -D_THREAD_SAFE -o protoc main.o libprotobuf.la libprotoc.la -lz
libtool: link: cannot find the library 2/src/libprotobuf.la' or unhandled argument2/src/libprotobuf.la'
make[2]: * [protoc] Error 1
make[1]: * [all-recursive] Error 1
make: * [all] Error 2
I'm seeing this too - and I diagnosed the problem. It's simple enough - the download directory path contains a space character. Simply move or rename the download directory so it no longer contains a space character and everything works.
Please see my bug report here.
I'm trying to compile glui sources in cygwin. When I'm running make I get the following output
g++ -I./ -I./include -I/usr/X11R6/include -c glui_add_controls.cpp
make: execvp: g++: Bad file number
make: *** [glui_add_controls.o] Error 127
But it works perfectly if I just compile this file with
g++ -I./ -I./include -I/usr/X11R6/include -c glui_add_controls.cpp
What can be the problem here?
I had the exact same problem.
Run Cygwin's setup.exe and search for "make". Install.
I'm trying to compile a program using a third party library, Omnet++ in my case. Apparently "make" does not find a library, but the path it uses is correct as you can see (in the sense that I can see the library under omnet++ source tree)
pv135168:basic Bob$ opp_makemake
Creating Makefile in /Users/Bob/Code/network_sim/basic... Makefile created, running "make depend" to add dependencies... opp_makedep -Y --objdirtree -I. -f Makefile -P\$O/ -- ./*.cc
pv135168:basic Bob$ make
g++ -c -g -Wall
-fno-stack-protector -m32 -DHAVE_PCAP -DXMLPARSER=libxml
-DWITH_PARSIM -DWITH_NETBUILDER -I.
-I/Users/Bob/Code/omnetpp-4.1/include -o out/gcc-debug//txc1.o txc1.cc g++ -m32 -Wl,-rpath,/Users/Bob/Code/omnetpp-4.1/lib -Wl,-rpath,. -o out/gcc-debug//basic out/gcc-debug//txc1.o -Wl,-all_load
-L"/Users/Bob/Code/omnetpp-4.1/lib/gcc"
-L"/Users/Bob/Code/omnetpp-4.1/lib" -u _tkenv_lib -lopptkenvd
-loppenvird -lopplayoutd -u _cmdenv_lib -loppcmdenvd -loppenvird
-loppsimd -lstdc++
ld: library not found for -lopptkenvd
collect2: ld returned 1 exit status make: *** [out/gcc-debug//basic]
Error 1 pv135168:basic Bob$
It's looking in the following directories for a file called libopptkenvd.dylib or libopptkenvd.a:
/Users/Bob/Code/omnetpp-4.1/lib/gcc
/Users/Bob/Code/omnetpp-4.1/lib
Is that file in one of those directories (or in the standard directories like /usr/lib)? I don't see an indication of that in your output.