I'm attempting to convert this make file to a Windows make file. I haven't done anything like this before, and need some help. I've done research but don't really understand the plethora of errors that I'm running into. Is there an easy way to port this? Is it possible? Could this be made cross platform for cmake? This is all new to me.
#FLAGS = -lm -L/usr/pub/lib -lefence -o
#CC = cc -O2 -fullwarn -TENV:large_GOT
#CC = cc -g -Wall
CC = gcc -O2 # at least for SunOS
#CC = cc -g
#CC = cc -O2 -fullwarn
#CC = cc -O2
FLAGS = -lm -o
SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c contact_order.c contact_map.c
OBJECT = ${SOURCE:.c=.o}
BINDIR = .
.c.o:
$(CC) -c $< -o $#
stride : $(OBJECT)
$(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride${ARCH}
$(OBJECT) : stride.h protot.h
clean:
rm -f $(OBJECT)
show:
echo $(SOURCE)
I'm fairly new to makefiles and am currently running with the following one that came with the code and that I extended by the options FFLAGS_EXT1, COMP_EXT1, and file1.F90 and file2.F90:
FC = gfortran
FFLAGS = -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
FFLAGS_EXT1 = -g -fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5 -Dno_nans -I ../ # Stricter compiler flags
LDFLAGS =
OBJ_EXT = o
EXE_EXT = x
COMP = $(FC) $(FFLAGS) -c -o $# $<
COMP_EXT1 = $(FC) $(FFLAGS_EXT1) -c -o $# $<
LINK = $(FC) $(LDFLAGS) -o $# $^
MAIN_MODULES = $(a list of file names without extensions)
OUR_MODULES = $(another list of file names without extensions)
# FORTRAN settings
.SUFFIXES: .F90 .$(OBJ_EXT)
# compilation rules
.F90.$(OBJ_EXT):
# $(COMP)
$(COMP_EXT1)
.PHONY: all
all: \
program1.$(EXE_EXT) program2.$(EXE_EXT) ...
program1.$(EXE_EXT): \
$(addsuffix .$(OBJ_EXT),$(MAIN_MODULES)) \
$(addsuffix .$(OBJ_EXT),$(OUR_MODULES)) \
file1.$(OBJ_EXT) \
file2.$(OBJ_EXT)
$(LINK)
...
This enables me to compile either all of the source files with FFLAGS or with the stricter FFLAGS_EXT1 depending on the choice of the compilation rule.
What I'd like to get is: use COMP as default (there are also other programs apart from the defined program1 which I must not break compatibility with) but use COMP_EXT1 or respectively FFLAGS_EXT1 specifically for file1 and file2 (the legacy code throws a lot of warnings I'd like to ignore and only focus on my new stuff - it is a fairly large project in total...).
I am aware of, e.g., this post, but I'm totally unaware of how to implement this in my case.
Any help would be highly appreciated!
EDIT:
Thanks to the hint by #Matt, I figured out the this changed version would do the trick:
FC = gfortran
FFLAGS = -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
FFLAGS_EXT1 = -g -fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5 -Dno_nans -I ../ # Stricter compiler flags
LDFLAGS =
OBJ_EXT = o
EXE_EXT = x
COMP = $(FC) $(FFLAGS) -c -o $# $<
LINK = $(FC) $(LDFLAGS) -o $# $^
MAIN_MODULES = $(a list of file names without extensions)
OUR_MODULES = $(another list of file names without extensions)
# FORTRAN settings
.SUFFIXES: .F90 .$(OBJ_EXT)
# compilation rules
.F90.$(OBJ_EXT):
$(COMP)
file1.$(OBJ_EXT):
$(FC) $(FFLAGS_EXT1) -c file1.F90 -o file1.$(OBJ_EXT)
file2.$(OBJ_EXT):
$(FC) $(FFLAGS_EXT1) -c file2.F90 -o file2.$(OBJ_EXT)
.PHONY: all
all: \
program1.$(EXE_EXT) program2.$(EXE_EXT) ...
program1.$(EXE_EXT): \
$(addsuffix .$(OBJ_EXT),$(MAIN_MODULES)) \
$(addsuffix .$(OBJ_EXT),$(OUR_MODULES)) \
file1.$(OBJ_EXT) \
file2.$(OBJ_EXT)
$(LINK)
...
However, this seems to be quite cumbersome once there are many rules and many files. Simply using something like $(COMP_EXT1) did not work, as it failed with a no input file error.
Is there a way to shorten this construct?
Well, by all means, this is a matter of style. But let's try something:
# prefer simple variables over recursive ones...
FC := gfortran
FFLAGS := -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
FFLAGS_EXTRA := -fbacktrace -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5
# ...unless we *do* require deferred expansion
COMP = $(FC) $(FFLAGS) $(FFLAGS_$#) -c -o $# $<
LINK = $(FC) $(LDFLAGS) -o $# $^
# this is a matter of choice but one-letter variables could be handy
O := o
X := x
# I assume both file1 and file2 are already mentioned here
MAIN_MODULES := $(a list of file names without extensions)
OUR_MODULES := $(another list of file names without extensions)
# use computed variables for maximum flexibility
FFLAGS_file1.$O := $(FFLAGS_EXTRA)
FFLAGS_file2.$O := $(FFLAGS_EXTRA)
.PHONY: all
all: program1.$X program2.$X ...
program1.$X: $(addsuffix .$O,$(MAIN_MODULES) $(OUR_MODULES))
$(LINK)
program2.$X: ...
$(LINK)
# it is recommended to use pattern rules instead of suffix rules
%.$O: %.F90
$(COMP)
...
Maybe you want to go a different route, namely to use gmtt which is a library for well, quite some things programming in GNUmake. It offers a table data structure which is aimed at build config tasks like yours:
include gmtt-master/gmtt.mk
FC = gfortran
FFLAGS = -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
LDFLAGS =
OBJ_EXT = o
EXE_EXT = x
COMP = $(FC) $(FFLAGS) -c -o $# $<
LINK = $(FC) $(LDFLAGS) -o $# $^
MAIN_MODULES = $(a list of file names without extensions)
OUR_MODULES = $(another list of file names without extensions)
# FORTRAN settings
.SUFFIXES: .F90 .$(OBJ_EXT)
# Construct a gmtt table. The one caveat is that we must escape the space characters in the
# second column until we select entries from the table.
define COMPILE_FLAGS_TBL
2
file1.$(OBJ_EXT) $(call spc-mask,-fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5)
file2.$(OBJ_EXT) $(call spc-mask,-fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5)
endef
# Special flags: "select column 2 from COMPILE_FLAGS_TBL where first column is string-equal to the target"
# ...and recover the space characters afterwards:
FFLAGS_SPECIAL = $(call spc-unmask,$(call select,2,$(COMPILE_FLAGS_TBL),$$(call str-eq,$$1,$#)))
# compilation rules
.PHONY: all
all: foo.o bar.o file1.o file2.o
%.F90:
touch $#
%.o: %.F90
#echo flags: $(FFLAGS) $(FFLAGS_SPECIAL)
Output:
$ make
touch foo.F90
flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
touch bar.F90
flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
touch file1.F90
flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../ -fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5
touch file2.F90
flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../ -fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5
rm bar.F90 file1.F90 foo.F90 file2.F90
You can have more flexible file selection by using globs:
include gmtt-master/gmtt-master/gmtt.mk
FFLAGS = -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
OBJ_EXT = o
# Construct a gmtt table. The one caveat is that we must escape the space characters in the
# second column until we select entries from the table.
define COMPILE_FLAGS_TBL
2
file1.$(OBJ_EXT) $(call spc-mask,-fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5)
file2.$(OBJ_EXT) $(call spc-mask,-fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5)
endef
define PATTERN_FLAGS_TBL
2
*_frobozz_[7-9].$(OBJ_EXT) $(call spc-mask,-ffrobozz)
X_frabazz_*.$(OBJ_EXT) $(call spc-mask,-ffrabazz -dwhatever)
endef
# Special flags: "select column 2 from COMPILE_FLAGS_TBL where first column is string-equal to the target"
# ...and recover the space characters afterwards:
FFLAGS_SPECIAL = $(call spc-unmask,$(call select,2,$(COMPILE_FLAGS_TBL),$$(call str-eq,$$1,$#)))
# Very special flags: "select column 2 from PATTERN_FLAGS_TBL where target matches glob in first column"
# ...and recover the space characters afterwards
FFLAGS_VERY_SPECIAL = $(call spc-unmask,$(call select,2,$(PATTERN_FLAGS_TBL),$$(call glob-match,$#,$$1)))
# compilation rules
.PHONY: all
all: foo.o bar.o file1.o file2.o A_frobozz_8.o A_frobozz_6.o X_frabazz_mike.o X_frabazz_mandy.o
%.F90:
#touch $#
%.o: %.F90
#echo $# flags: $(FFLAGS) $(FFLAGS_SPECIAL) $(FFLAGS_VERY_SPECIAL)
Output:
$ make
foo.o flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
bar.o flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
file1.o flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../ -fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5
file2.o flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../ -fbacktrace -ffpe-trap=zero,invalid,overflow,underflow -fbounds-check -fcheck=all -Wconversion -std=gnu -O3 -fmax-errors=5
A_frobozz_8.o flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../ -ffrobozz
A_frobozz_6.o flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../
X_frabazz_mike.o flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../ -ffrabazz -dwhatever
X_frabazz_mandy.o flags: -g -ffpe-trap=zero,invalid,overflow,underflow -Dno_nans -I ../ -ffrabazz -dwhatever
rm X_frabazz_mandy.F90 A_frobozz_8.F90 bar.F90 file1.F90 foo.F90 A_frobozz_6.F90 file2.F90 X_frabazz_mike.F90
Compiling error
I am quite new to Fortran coding.
Currently, I have a makefile which has been previously used by original authors to compile the Fortran codes in Linux. However, I cannot understand what needs to be changed in the previous makefile to run it in Windows-based compiler Silverfrost FTN95.
While trying to compile in FTN95 I encountered the following error:
C:\Users\Geo-TGS\Documents\landslidemodel\src\TRIGRS>MAKE TPX
mpif90 -w -O3 -w -O3 -c ssizgrd.f95
process_begin: CreateProcess(NULL, mpif90 -w -O3 -w -O3 -c ssizgrd.f95, ...) failed.
make (e=2): The system cannot find the file specified.
makefile:59: recipe for target `ssizgrd.o' failed
MAKE: *** [ssizgrd.o] Error 2
C:\Users\Geo-TGS\Documents\landslidemodel\src\TRIGRS>make trg
mpif90 -w -O3 -w -O3 -c grids.f95
process_begin: CreateProcess(NULL, mpif90 -w -O3 -w -O3 -c grids.f95, ...) failed.
make (e=2): The system cannot find the file specified.
makefile:59: recipe for target `grids.o' failed
make: *** [grids.o] Error 2
Below is the Makefile code:
TRG = trg
PRG = prg
TPX = tpx
OBJT90 = trigrs.o flux.o prpijz.o svxmdv.o svijz.o dzero_brac.o
OBJT95 = grids.o input_vars.o model_vars.o dsimps.o input_file_defs.o iverson.o pstpi.o satfin.o savage.o steady.o trini.o unsinf.o ivestp.o pstpf.o rnoff.o satinf.o smallt.o svgstp.o unsfin.o unsth.o ssizgrd.o svlist.o
OBJT77 = calerf.o dbsct.o derfc.o irdgrd.o irdswm.o isvgrd.o roots.o srdgrd.o srdswm.o ssvgrd.o
OBJP90 = trigrs_p.o partial_p.o flux.o flux_p.o prpijz.o svxmdv.o svijz.o dzero_brac.o srdgrd_p.o irdgrd_p.o
OBJP95 = modules_p.o grids.o input_vars.o model_vars.o dsimps.o input_file_defs.o iverson.o pstpi.o pstpi_p.o satfin.o satfin_p.o savage.o steady.o trini.o trini_p.o unsinf.o unsinf_p.o ivestp.o ivestp_p.o pstpf.o pstpf_p.o rnoff.o satinf.o satinf_p.o smallt.o svgstp.o svgstp_p.o unsfin.o unsfin_p.o unsth.o unsth_p.o ssizgrd.o ssizgrd_p.o svlist.o rnoff_p.o steady_p.o
OBJP77 = calerf.o dbsct.o derfc.o irdgrd.o irdswm.o irdswm_p.o isvgrd.o roots.o srdgrd.o srdswm.o srdswm_p.o ssvgrd.o
OBJX90 = tpindx.o nxtcel.o
OBJX95 = ssizgrd.o
OBJX77 = isvgrd.o mpfldr.o rdflodir.o sindex.o slofac.o srdgrd1.o
LIBS =
CC = gcc -O3
CCFLAGS = -lgsl -lgslcblas -lm
FC = ftn95 -w -O3
FFLAGS =
F90 = f95 -w -O3
MPIF90 = mpif90 -w -O3
F90FLAGS = -w -O3
LDFLAGS = -w -O3
all: $(TRG) $(PRG)
#-----------------------------------------------------------------
$(TRG): $(OBJT95) $(OBJT90) $(OBJT77)
$(F90) $(CCLIBS) $(LDFLAGS) -o $# $(OBJT95) $(OBJT90) $(OBJT77) $(CCFLAGS) $(LIBS)
$(PRG): $(OBJP95) $(OBJP90) $(OBJP77)
$(MPIF90) $(CCLIBS) $(LDFLAGS) -o $# $(OBJP95) $(OBJP90) $(OBJP77)
$(CCFLAGS) $(LIBS)
$(TPX): $(OBJX95) $(OBJX90) $(OBJX77)
$(F90) $(CCLIBS) $(LDFLAGS) -o $# $(OBJX95) $(OBJX90) $(OBJX77) $(CCFLAGS) $(LIBS)
#-----------------------------------------------------------------
clean:
rm -f $(TRG) $(TPX) $(PRG)
rm -rf $(OBJT95) $(OBJT90) $(OBJT77) $(OBJP95) $(OBJP90) $(OBJP77)
rm -rf $(OBJX95) $(OBJX90) $(OBJX77)
rm -rf *.mod *.exe *.stackdump
.SUFFIXES: $(SUFFIXES) .f90 .f .c .f95
.f90.o:
$(MPIF90) $(F90FLAGS) -c $<
.f.o:
$(MPIF90) $(F90FLAGS) -c $<
.c.o:
$(CC) $(CCINCLUDE) -c -w $<
.f95.o:
$(MPIF90) $(F90FLAGS) -c $<
What changes need to be made for the code to compile?
I have the following Makefile. Whenever I run make, I get the following error.
ifort: error #10236: File not found: 'mkl_matrix_multiply.o'
I have been trying to figure this out for a while now with no luck.
C = icc
FC = ifort
LD = ifort
OPT = -Ofast -vec_report6 -simd -xhost -debug -traceback -ftrapuv
OP = -Ofast -vec_report6 -simd -xhost
LINK = -L$(MKLROOT)/lib/intel64 $(MKLROOT)/lib/intel64/libmkl_blas95_ilp64.a -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -lpthread -lm
INCLUDE = -openmp -i8 -I$(MKLROOT)/include/intel64/ilp64 -I$(MKLROOT)/include
mkl_matrix_multiply.exe: mkl_matrix_multiply.o timing.o
$(LD) -o mkl_matrix_multiply.exe mkl_matrix_multiply.o timing.o
mkl_matrix_multiply.o: mkl_matrix_multiply.f90
$(FC) $(INCLUDE) $(LINK) mkl_matrix_multiply.f90
timing.o: timing.c
$(CC) $(OP) -c timing.c
dummy.o: dummy.c
$(CC) $(OP) -c dummy.c
clean:
rm -f *.o matrix_multiply.exe
Any help would be greatly appreciated.
Seems like you are missing -c in mkl_matrix_multiply.o rule.
Modify your makefile as
C = icc
FC = ifort
LD = ifort
OPT = -Ofast -vec_report6 -simd -xhost -debug -traceback -ftrapuv
OP = -Ofast -vec_report6 -simd -xhost
LINK = -L$(MKLROOT)/lib/intel64 $(MKLROOT)/lib/intel64/libmkl_blas95_ilp64.a -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -lpthread -lm
INCLUDE = -openmp -i8 -I$(MKLROOT)/include/intel64/ilp64 -I$(MKLROOT)/include
mkl_matrix_multiply.exe: mkl_matrix_multiply.o timing.o
$(LD) -o mkl_matrix_multiply.exe mkl_matrix_multiply.o timing.o
mkl_matrix_multiply.o: mkl_matrix_multiply.f90
$(FC) -c $(INCLUDE) $(LINK) mkl_matrix_multiply.f90
timing.o: timing.c
$(CC) $(OP) -c timing.c
dummy.o: dummy.c
$(CC) $(OP) -c dummy.c
clean:
rm -f *.o matrix_multiply.exe
I'm getting the following error from my compiler:
g++ -c -m32 tracecone.cpp -I/usr/X11R6/include -I/usr/X11/include/GL -I/Users/owner/Documents/raytrace/Graphics -I../RayTrace -I/Users/owner/Documents/raytrace/Graphics -I/Users/owner/Documents/raytrace/VrMath -I/Users/owner/Documents/raytrace/OpenglRender -I/Users/owner/Documents/raytrace/RaytraceMgr
g++ -o -m32 tracecone ../RayTrace/RayTraceData.o tracecone.o /Users/owner/Documents/raytrace/OpenglRender/GlutRenderer.o /Users/owner/Documents/raytrace/RaytraceMgr/SceneDescription.o -L/usr/X11/lib -L/usr/X11R6/lib -L/Users/owner/Documents/raytrace/Graphics -L/Users/owner/Documents/raytrace/VrMath -lglut -lGLU -lGL -lX11 -lXext -lXmu -lXext -lXmu -lXt -lXi -lSM -lICE -lraygraph -lvrmath
i686-apple-darwin11-llvm-g++-4.2: tracecone: No such file or directory
make: *** [tracecone] Error 1
However, I am not sure which file it's saying is not there. Does it mean tracecone? or one of the library files? Either way, it looks like everything is right where it should be.
What could cause this error?
Here is my make file:
PROG = tracecone
RBASE= /Users/owner/Documents/raytrace
GDIR=$(RBASE)/Graphics
MDIR=$(RBASE)/VrMath
ODIR=$(RBASE)/OpenglRender
MANDIR=$(RBASE)/RaytraceMgr
CFLAGS = -w -s -O2 -ansi -DSHM
XLIBS = -lX11 -lXext -lXmu -lXext -lXmu -lXt -lXi -lSM -lICE
LIBS = -lglut -lGLU -lGL
RAYLIBS = -lraygraph -lvrmath
INCLS = -I/usr/X11R6/include -I/usr/X11/include/GL
INCL1 = -I$(GDIR) -I../RayTrace -I$(GDIR) -I$(MDIR) -I$(ODIR) -I$(MANDIR)
LIBDIR = -L/usr/X11/lib -L/usr/X11R6/lib -L$(GDIR) -L$(MDIR)
#source codes
SRCS = $(PROG).cpp
#substitute .cpp by .o to obtain object filenames
OBJS = $(SRCS:.cpp=.o)
#in ../Graphics
OBJOD = $(ODIR)/GlutRenderer.o
OBJO = GlutRenderer.o
OBJMAND = $(MANDIR)/SceneDescription.o
OBJMAN = SceneDescription.o
OBJ_temp = ../RayTrace/RayTraceData.o
#$< evaluates to the target's dependencies,
#$# evaluates to the target
$(PROG): $(OBJS)
g++ -o -m32 $# $(OBJ_temp) $(OBJS) $(OBJOD) $(OBJMAND) $(LIBDIR) $(LIBS) $(XLIBS) $(RAYLIBS)
$(OBJS):
g++ -c -m32 $*.cpp $(INCLS) $(INCL1)
$(OBJ1):
cd $(GDIR); g++ -m32 -c $*.cpp $(INCLS)
$(OBJM):
cd $(MDIR); g++ -m32 -c $*.cpp $(INCLS)
$(OBJO):
cd $(ODIR); g++ -m32 -c $*.cpp $(INCLS)
$(OBJMAN):
cd $(MANDIR); g++ -m32 -c $*.cpp $(INCLS)
clean:
rm $(OBJS)
clean1:
rm $(OBJD1)
Thanks in advance.
You should place your target right after -o flag:
g++ -o $# -m32 ...
Flag -o means output and in case of g++ -o tracecone ... you'll specify tracecone as output, but in case g++ -o -m32 tracecone ... you are specifying -m32 as output and tracecone as one of the object files. And g++ says that there is no such object file because there is actually no such file.