Btree : why access probe is slower than access data within page - disk

When I learnt B Tree data structure, the author has give two definitions about page and probe. And these two term is the main idea to build B Tree. Here is the two definition of page and probe :
page : continuous block of data (eg : a file or 4096 byte chunk)
Probe: First access to page (eg : from disk to memory)
-->Property : Time request for a probe is much larger than time to access data within a page.
1) I don't understand so much. I know I/O access is much more lower than in memory, but why first access to page is much more larger than access data within a page ? (although all data in one page is still stored on disk, too).
2) In above property, it mean : One request for a probe is larger than one request to data access within page. Or, one request for a probe is larger than access ALL data within a page.
Thanks :)

Well, since a "probe" is the first access to page, you need to first do a probe before you can access the data within the page.
I am guessing that the property should be read as "the probe time is much higher than accesses that are done AFTER the probe". I have to admit that, from what you quoted, the way it is stated is ambiguous.

Related

Server-side pagination in mean stack application

I am working on mean stack application with angular 4.I am worrying about pagination from the server side.I can not able to understand the logic.Please help me !
My guess is you are using MongoDB since you mentioned MEAN Stack. For implementing pagination, you can use the find, limit and skip functions.
Example: (pagesize is 10 records)
// Page 1
db.document.find().limit(10);
// Page 2
db.document.find().skip(10).limit(10);
// Page 3
db.document.find().skip(20).limit(10);
This is native to MongoDB however, this approach has a drawback as MongoDB manual states:
The cursor.skip() method is often expensive because it requires the server to walk from the beginning of the collection or index to get the offset or skip position before beginning to return results. As the offset (e.g. pageNumber above) increases, cursor.skip() will become slower and more CPU intensive. With larger collections, cursor.skip() may become IO bound.
You also can use any indexed field to achieve this (preferably _id field).

When is it better to generate a static page or dynamically generate?

The title pretty much sums up my question.
When is it more efficient to generate a static page, that a user can access, as apposed to using dynamically generated pages that query a database? As in what situations would one be better than the other.
To serve up a static page, your web server just needs to read the page off the disk and send it. Virtually no processing will be required. If the page is frequently accessed, it will probably be cached in memory, so even the disk access will not be needed.
Generating pages dynamically obviously has more overhead. There is a cost for every DB access you make, no matter how simple the query is. (On a project I worked on recently, I measured a minimum overhead of 0.7ms for each query, even for SELECT 1;) So if you can just generate a static page and save it to disk, page accesses will be faster. How much faster? It just depends on how much work is being done to generate the page dynamically. We don't know what you are doing, so we can't comment on that.
Now, if you generate a static page and save it to disk, that means you need to re-generate it every time the data which went into generating that page changes. If the data changes more often than the page is actually accessed, you could be doing more work rather than less! But in most cases, that's a very unlikely situation.
More likely, the biggest problem you will experience from generating static pages and saving them to disk is coding (and maintaining) the logic for re-generating the pages whenever necessary. You will need to keep track of exactly what data goes into each page, and in every place in the code where data can be changed, you will need to invoke re-generation of all the relevant pages. If you forget just one, then your users may be looking at stale data some of the time.
If you mix dynamic generation per-request and caching generated pages on disk, then your code will be harder to read and maintain, because of mixing the two styles.
And you can't really cache generated pages on disk in certain situations -- like responding to POST requests which come from a form submission. Or imagine that when your users invoke certain actions, you have to send a request to a 3rd party API, and the data which comes back from that API will be used in the page. What comes back from the API may be different each time, so in this case, you need to generate the page dynamically each time.
Static pages (or better resources) are filled with content, that does not change or at least not often, and does not allow further queries on it: About Page, Contact, ...
In this case it doesn't make any sense to query these pages. On the other side we have Data (e.g. in a Database) and want to query it/give the user the opportunity to query it. In this case you give the User a page with the possibility to specify the query and return a rendered page with the dynamically generated data.
In my opinion it depends on the result you want to present to the user. Either it is only an information or it is the possibility to query a Datasource. The first result is known before you do something, the second (query data) is known after you have the query parameters, which means you don't know the result beforehand (it could be empty or invalid).
It depends on your architecture, but when you consider that GET Requests should be idempotent it should be also easy to cache dynamic Pages with a Proxy, and invalidate the cache, when something new happens to the data which is displayed on the cached path. In this case one could save a lot of time, because the system behaves like the cached pages would be static, but instead coming from the filesystem, they come from your memory, which is really fast.
Cheers
Laidback

Why memory-mapped files are always mapped at page boundaries?

This is my first question here; I'm not sure if it is off-topic.
While self-studying, I have found the following statement regarding Operating Systems:
Operating systems that allow memory-mapped files always require files to be mapped at page boundaries. For example, with 4-KB page, a file can be mapped in starting at virtual address 4096, but not starting at virtual address 5000.
This statement is explained in the following way:
If a file could be mapped into the middle of page, a single virtual page would
need two partial pages on disk to map it. The first page, in particular, would
be mapped onto a scratch page and also onto a file page. Handling a page
fault for it would be a complex and expensive operation, requiring copying of
data. Also, there would be no way to trap references to unused parts of pages.
For these reasons, it is avoided.
I would like to ask for help to understand this answer. Particularly, what does it mean to say that "a single virtual page would need two partial pages on disk to map it"? From what I found about memory-mapped files, virtual pages are mapped to files on disk, and not to a paging file. Is this what is meant by "partial page"?
Also, what is meant by "scratch page" here? I've tried to look up this term on books (Tanenbaum's "Modern Operating Systems" and "Structured Computer Organization") and on the Web, but haven't found it.
First of all, when reading books and documentation always try to look critically at what you see. Sometimes authors tend to use language like "there is no other way" just to promote the solution that they are describing. Other ways are always possible.
Now to the matter. Modern operating systems always have a disk location for every allocated memory page. This makes sense. Once it will be necessary to discard the page in the memory - it is already clear where to put this page if it is 'dirty' or just discard it if it is not modified. This strategy is widely accepted. Although alternative policies are possible also.
The disk location can be either paging file or memory mapped file. The most common use of the memory mapped files - executables and dlls. They are (almost) never modified. If a page with the code is not used for some time - discard it. If control will come there - reread it from the file.
In the abstract that you mentioned, they say would need two partial pages on disk to map it. The first page, in particular, would be mapped onto a scratch page. They tend to present situation like there is only one solution here. In fact, it is possible to allocate page in a paging file for such combined page and handle appropriate data copying. It is also possible not to have anything in the paging file for such page and assemble this page from files using transient page. In 99% of cases disk controller can read/write only from/to the page boundary. This means that you need to read from the first file to memory page, from the second file to the transient page. Copy data from the transient page and immediately discard it.
As you see, it is perfectly possible to combine several files in one page. There is no principle problem here. Although algorithms for handling this solution will be more complex and they will consume more CPU clocks. Reconstructing such page (if it will be discarded) will require reading from several different files. In our days 4kb is rather small quantity. Saving 2kb is not a huge gain. In my opinion, looking at the benefits and the cost I would say that benefits are not significant enough.
Virtual address pages (on every machine I've ever heard of) are aligned on page sized boundaries. This is simply because it makes the math very easy. On x86, the page size is 4096. That is exactly 12 bits. To figure out which virtual page an address is referring to, you simply shift the address to the right by 12. If you were to map a disk block (assume 4096 bytes) to an address of 5000, it would start on page #1 (5000 >> 12 == 1) and end on page #2 (9095 >> 12 == 2).
Memory mapped files work by mapping a chunk of virtual address space to the file, but the data is loaded on demand (indeed, the file could be far larger than physical memory and may not fit). When you first access the virtual address, if the data isn't there (i.e. it's not in physical memory). The processor will fault and the OS has to fetch the data. When you fetch the data, you need to fetch all of the data for the page, or else you wouldn't be able to turn off the fault. If you don't have the addresses aligned, then you'd have to bring in multiple disk blocks to fill the page. You can certainly do this, it's just messy and inefficient.

Transferring lots of objects with Guid IDs to the client

I have a web app that uses Guids as the PK in the DB for an Employee object and an Association object.
One page in my app returns a large amount of data showing all Associations all Employees may be a part of.
So right now, I am sending to the client essentially a bunch of objects that look like:
{assocation_id: guid, employees: [guid1, guid2, ..., guidN]}
It turns out that many employees belong to many associations, so I am sending down the same Guids for those employees over and over again in these different objects. For example, it is possible that I am sending down 30,000 total guids across all associations in some cases, of which there are only 500 unique employees.
I am wondering if it is worth me building some kind of lookup index that I also send to the client like
{ 1: Guid1, 2: Guid2 ... }
and replacing all of the Guids in the objects I send down with those ints,
or if simply gzipping the response will compress it enough that this extra effort is not worth it?
Note: please don't get caught up in the details of if I should be sending down 30,000 pieces of data or not -- this is not my choice and there is nothing I can do about it (and I also can't change Guids to ints or longs in the DB).
Your wrote at the end of your question the following
Note: please don't get caught up in the details of if I should be
sending down 30,000 pieces of data or not -- this is not my choice and
there is nothing I can do about it (and I also can't change Guids to
ints or longs in the DB).
I think it's your main problem. If you don't solve the main problem you will be able to reduce the size of transferred data to 10 times for example, but you still don't solve the main problem. Let us we think about the question: Why so many data should be sent to the client (to the web browser)?
The data on the client side are needed to display some information to the user. The monitor is not so large to show 30,000 total on one page. No user are able to grasp so much information. So I am sure that you display only small part of the information. In the case you should send only the small part of information which you display.
You don't describe how the guids will be used on the client side. If you need the information during row editing for example. You can transfer the data only when the user start editing. In the case you need transfer the data only for one association.
If you need display the guids directly, then you can't display all the information at once. So you can send the information for one page only. If the user start to scroll or start "next page" button you can send the next portion of data. In the way you can really dramatically reduce the size of transferred data.
If you do have no possibility to redesign the part of application you can implement your original suggestion: by replacing of GUID "{7EDBB957-5255-4b83-A4C4-0DF664905735}" or "7EDBB95752554b83A4C40DF664905735" to the number like 123 you reduce the size of GUID from 34 characters to 3. If you will send additionally array of "guid mapping" elements like
123:"7EDBB95752554b83A4C40DF664905735",
you can reduce the original size of data 30000*34 = 1020000 (1 MB) to 300*39 + 30000*3 = 11700+90000 = 101700 (100 KB). So you can reduce the size of data in 10 times. The usage of compression of dynamic data on the web server can reduce the size of data additionally.
In any way you should examine why your page is so slowly. If the program works in LAN, then the transferring of even 1MB of data can be quick enough. Probably the page is slowly during placing of the data on the web page. I mean the following. If you modify some element on the page the position of all existing elements have to be recalculated. If you would be work with disconnected DOM objects first and then place the whole portion of data on the page you can improve the performance dramatically. You don't posted in the question which technology you use in you web application so I don't include any examples. If you use jQuery for example I could give some example which clear more what I mean.
The lookup index you propose is nothing else than a "custom" compression scheme. As amdmax stated, this will increase your performance if you have a lot of the same GUIDs, but so will gzip.
IMHO, the extra effort of writing the custom coding will not be worth it.
Oleg states correctly, that it might be worth fetching the data only when the user needs it. But this of course depends on your specific requirements.
if simply gzipping the response will compress it enough that this extra effort is not worth it?
The answer is: Yes, it will.
Compressing the data will remove redundant parts as good as possible (depending on the algorithm) until decompression.
To get sure, just send/generate the data uncompressed and compressed and compare the results. You can count the duplicate GUIDs to calculate how big your data block would be with the dictionary compression method. But I guess gzip will be better because it can also compress the syntactic elements like braces, colons, etc. inside your data object.
So what you are trying to accomplish is Dictionary compression, right?
http://en.wikibooks.org/wiki/Data_Compression/Dictionary_compression
What you will get instead of Guids which are 16 bytes long is int which is 4 bytes long. And you will get a dictionary full of key value pairs that will associate each guid to some int value, right?
It will decrease your transfer time when there're many objects with the same id used. But will spend CPU time before transfer to compress and after transfer to decompress. So what is the amount of data you transfer? Is it mb / gb / tb? And is there any good reason to compress it before sending?
I do not know how dynamic is your data, but I would
on a first call send two directories/dictionaries mapping short ids to long GUIDS, one for your associations and on for your employees e.g. {1: AssoGUID1, 2: AssoGUID2,...} and {1: EmpGUID1, 2:EmpGUID2,...}. These directories may also contain additional information on the Associations and Employees instances; I suspect you do not simply display GUIDs
on subsequent calls just send the index of Employees per Association { 1: [2,4,5], 3:[2,4], ...}, the key being the association short id and the ids in the array value, the short ids of the employees. Given your description building the reverse index: Employee to Associations may give better result size wise (but higher processing)
Then its all down to associative arrays manipulations which is straightforward in JS.
Again, if your data is (very) dynamic server side, the two directories will soon be obsolete and maintaining synchronization may cost you a lot.
I would start by answering the following questions:
What are the performance requirements? Are there size requirements? Speed requirements? What is the minimum performance that is truly needed?
What are the current performance metrics? How far are you from the requirements?
You characterized the data as possibly being mostly repeats. Is that the normal case? If not, what is?
The 2 options you listed above sound reasonable and trivial to implement. Try creating a look-up table and see what performance gains you get on actual queries. Try zipping the results (with look-ups and without), and see what gains you get.
In my experience if you're not TOO far from the goal, performance requirements are often trial and error.
If those options don't get you close to the requirements, I would take a step back and see if the requirements are reasonable in the time you have to solve the problem.
What you do next depends on which performance goals are lacking. If it is size, you're starting to be limited if you're required to send the entire association list ever time. Is that truly a requirement? Can you send the entire list once, and then just updates?

How can I decommit a file-mapped page?

I have a memory mapped file, and a page in a view which is currently committed. I would like to decommit it. MapViewOfFile tells me I cannot use VirtualFree on file mapped pages. Is there some other way to do it?
You cannot decommit it, but what you really want is not decommitting it ...
What you really want is to release the page from a memory. This can be done by using VirtualUnlock. See VirtualUnlock Remarks:
Calling VirtualUnlock on a range of memory that is not locked releases the pages from the process's working set.
Note: As documented, the function will return FALSE (the page was not locked) and GetLastError will return ERROR_NOT_LOCKED.
This is described in Guillermo Prandi's question CreateFileMapping, MapViewOfFile, how to avoid holding up the system memory.
Remarks: I think you can view it this way: decommitting a mapped page is nonsense - pages is commited whenever it is backed by a physical storage, be it a memory or a file. File mapped page cannot be decommitted in this sense, as it will be always backed by the file.
However, the code in the question mentioned is measuring the memory footprint, but what it measures is not representative, as the fact the page is removed from the process working set does not necessarily mean it is no longer present in a memory.
I have performed a different experiment, measuring how long it takes to read a byte from a memory mapped page. After unlocking the page or unmapping the view and closing the mapping handle the access was still fast.
For the access to be slow (i.e. to really discard the page from the memory) it was necessary to unmap the view and close BOTH memory mapping handle and file handle (the last was surprising to me, as I expected unmapping the view and closing the mapping handle will be enough).
It is still possible system will take VirtualUnlocked as a hint and it will discard the pages sooner, once it needs to discard something, but this is something I have to think about yet how to prove.

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