Pass url to a bash script for use in scp - bash

I'm writing a cron to backup some stuffs on a server.
Basically I'm sending specific files form a local directory using scp.
I'm using a public key to avoid authentication.
For reusability I'm passing the local directory and the server url by arguments to my bash script.
How I set my parameters:
#!/bin/bash
DIR="$1"
URL="$2"
FILES="$DIR*.ext"
My problem is about formatting the url.
Without formatting
How I send files to the server:
#!/bin/bash
for F in $FILEs
do
scp $F $URL;
if ssh $URL stat $(basename "$F")
then
rm $F
else
echo "Fails to copy $F to $URL"
fi
done
If I try to copy at user's home on the server I do:
$ ~/backup /path/to/local/folder/ user#server.com:
If I try to copy at a specific directory on the server I do:
$ ~/backup /path/to/local/folder/ user#server.com:/path/to/remote/folder/
In all cases it gives me the well known error (and my custom echo):
ssh: Could not resolve hostname user#server.com: nodename nor [...]
Can't upload /path/to/local/folder/file.ext to user#server.com
And it works anyway (the file is copied). But that's not a solution, cause as scp fails (seems to), the file is never deleted.
With formatting
I tried sending files using this method:
#!/bin/bash
for F in $FILES
do
scp $F "$URL:"
done
I no longer get an error, and it works for copying at user's home directory then deleting the local file:
$ ~/backup /path/to/local/folder/ user#server.com
But, of course, sending to a specific directory don't work at all.
Finally
So I think that my first method is more appropriate, but how can I get rid of that error?

Your mistake is that you can scp to user#server.com: but not ssh to it : you need to remove the trailing : character (and possible path after it). You can do it easily like this with bash parameter expansion :
ssh "${URL%:*}" stat "$(basename "$F")"
RECOMMENDATIONS
"USE MORE QUOTES!" They are vital. Also, learn the difference between ' and " and `. See http://mywiki.wooledge.org/Quotes and http://wiki.bash-hackers.org/syntax/words
if you have spaces in filenames, your code will breaks things up. Better use while IFS= read -r line; do #stuff with $line; done < file.txt
See bash parameter expansion

Related

How to build script bash with SFTP connection to pull files

I'm implementing agent script bash to pull files from the remote server with SFTP service.
The script must:
connect SFTP
file listing
cycling on files found
get every file and copy agent side
after that files copied must be deleted
The script is followed:
#!/bin/bash
SFTP_CONNECTION="sftp -oIdentityFile=/home/account_xxx/.ssh/service_ssh user#host"
DEST_DATA=/tmp/test/data/
# GET list file by ls command ###############
$SFTP_CONNECTION
$LIST_FILES_DATA_OSM1 = $("ls fromvan/test/data/test_1")
echo $LIST_FILES_DATA_OSM1
for file in "${LIST_FILES_DATA_OSM1[#]}"
do
$SFTP_CONNECTION get $file $DEST_DATA
$SFTP_CONNECTION rm $file
done
I tried the script but it seems that the connection and command execution (ls) are distinct on thread separated.
How can I provide command sequential as described above ?
Screenshoot:
Invalid find command
SSH it seem not available
RSYNC result to take the files is the followed:
Thanks
First of all, I would recommend the following syntax changes:
#!/bin/bash
sftp_connection() {
sftp -oIdentityFile=/home/account_xxx/.ssh/service_ssh user#host "$#";
}
Dest_Data=/tmp/test/data/
# GET list file by ls command ###############
sftp_connection
List_Files_D_OSM1=$("ls fromvan/test/data/test_1")
echo "$LIST_FILES_DATA_OSM1"
for file in "${LIST_FILES_DATA_OSM1[#]}"
do
sftp_connection get "$file" $Dest_Data
sftp_connection rm "$file"
done
Quoting $file and $List_Files_D_OSM1 to prevent globbing and word splitting.
Assignments can't start with a $, otherwise bash will try to execute List_Files_D_OSM1 and will complain with a command not found
No white spaces in assignments like List_Files_D_OSM1 = $("ls fromvan/test/data/test_1")
You can use ShellCheck to catch this kind of errors.
Having said that, it is in general not a good idea to use ls in such way.
What you can use instead is something like find. For example:
find . -type d -exec echo '{}' \;
Use a different client. lftp supports sftp as a transport, and has a subcommand for mirroring which will do the work of listing the remote directory and iterating over files for you.
Assuming your ~/.ssh/config contains an entry like:
Host myhost
IdentityFile /home/account_xxx/.ssh/service_ssh
...you can run:
lftp -e 'mirror -R fromvan/test/data/test_1 /tmp/test/data' sftp://user#myhost

How to rename all files over SSH

I am trying to rename all files in a remote directory over SSH or SFTP. The rename should convert the file into a date extension, for example .txt into .txt.2016-05-25.
I have the following command to loop each .txt file and try to rename, but am getting an error:
ssh $user#$server "for FILENAME in $srcFolder/*.txt; do mv $FILENAME $FILENAME.$DATE; done"
The error I am getting is:
mv: missing destination file operand after `.20160525_1336'
I have also tried this over SFTP with no such luck. Any help would be appreciated!
You need to escape (or single-quote) the $ of variables in the remote shell. It's also recommended to quote variables that represent file paths:
ssh $user#$server "for FILENAME in '$srcFolder'/*.txt; do mv \"\$FILENAME\" \"\$FILENAME.$DATE\"; done"
Try this:
By using rename (perl tool):
ssh user#host /bin/sh <<<$'
rename \047use POSIX;s/$/strftime(".%F",localtime())/e\047 "'"$srcFolder\"/*.txt"
To prepare/validate your command line, replace ssh...bin/sh by cat:
cat <<<$'
rename \047use POSIX;s/$/strftime(".%F",localtime())/e\047 "'"$srcFolder\"/*.txt"
will render something like:
rename 'use POSIX;s/$/strftime(".%F",localtime())/e' "/tmp/test dir"/*.txt
And you could localy try (ensuring $srcFolder contain a path to a local test folder):
/bin/sh <<<$'
rename \047use POSIX;s/$/strftime(".%F",localtime())/e\047 "'"$srcFolder\"/*.txt"
Copy of your own syntax:
ssh $user#$server /bin/sh <<<'for FILENAME in "'"$srcFolder"'"/*.txt; do
mv "$FILENAME" "$FILENAME.'$DATE'";
done'
Again, you could locally test your inline script:
sh <<<'for FILENAME in "'"$srcFolder"'"/*.txt; do
mv "$FILENAME" "$FILENAME.'$DATE'";
done'
or preview by replacing sh by cat.
When using/sending variables over SSH, you need to be careful what is a local variable and which is a remote variable. Remote variables must be escaped; otherwise they will be interpreted locally versus remotely as you intended. Other characters also need to be escaped such as backticks. The example below should point you in the right direction:
Incorrect
user#host1:/home:> ssh user#host2 "var=`hostname`; echo \$var"
host1
Correct
user#host1:/home:> ssh user#host2 "var=\`hostname\`; echo \$var"
host2

scp and remote mkdir -p

hi i have some file path like
/ifshk5/BC_IP/PROJECT/T1
1073/T11073_RICljiR/split/AG19_235/120225_I872_FCC0HN2ACXX_L8_RICljiRSYHSD2-1-IP
AAPEK-17_1.fq.gz
i need copy files from one ftp server to other. and also need to create directory if it not exist in server.
i login the sever which contains those file then run this code
#! /bin/bash
while read myline
do
for i in $myline
do
if [ -f $i ]
then
location=$(echo "$i" | awk -F "/" '{ print "", $6, $7, $8 }' OFS="/")
#location shows /T11073_RICekkR/Fq/AS59_59304
location="/opt/CLiMB/Storage3/ftp/ftp_climb/100033"$location
echo $location
ssh tam#192.168.174.43 mkdir -p $location
scp -r $i tam#192.168.174.43:$location
fi
done
done < /ifshk5/BC_IP/PROJECT/T11073/T11073_all_3254.fq.list
it has some problem, 1. it can't work always shows permission denied, please try again.
but when i direct type
ssh tam#192.168.174.43 mkdir -p /sample/xxxx
it can work, and the new dir location is right it shows like
/opt/CLiMB/Storage3/ftp/ftp_climb/100033/T11073_RICekkR/Fq/AS59_59304
I don't see where the "permission denied" error might come from; run the script with bash -x to see the command which causes the error. Maybe it's not what you expect.
Also try rsync instead of inventing the wheel again:
rsync --dirs $i tam#192.168.171.34:$b
--dirs will create the necessary folders on the remote side (and it will give you good error messages when something fails).
It might even be possible to do everything with a single call to rsync if you have the same folder structure on both sides:
rsync -avP /ifshk5/BC_IP/PROJECT/T11073/ tam#192.168.171.34:/opt/CLiMB/Storage3/ftp/ftp_climb/100033/
Note the / after the paths! Don't omit them.
rsync will figure out which files need to be transferred and copy only those. If you want to transfer only a subset, use --include-from

Shell Script to load multiple FTP files

I am trying to upload multiple files from one folder to a ftp site and wrote this script:
#!/bin/bash
for i in '/dir/*'
do
if [-f /dir/$i]; then
HOST='x.x.x.x'
USER='username'
PASSWD='password'
DIR=archives
File=$i
ftp -n $HOST << END_SCRIPT
quote USER $USER
quote PASS $PASSWD
ascii
put $FILE
quit
END_SCRIPT
fi
It is giving me following error when I try to execute:
username#host:~/Documents/Python$ ./script.sh
./script.sh: line 22: syntax error: unexpected end of file
I can't seem to get this to work. Any help is much appreciated.
Thanks,
Mayank
It's complaining because your for loop does not have a done marker to indicate the end of the loop. You also need more spaces in your if:
if [ -f "$i" ]; then
Recall that [ is actually a command, and it won't be recognized if it doesn't appear as such.
And... if you single quote your glob (at the for) like that, it won't be expanded. No quotes there, but double quotes when using $i. You probably also don't want to include the /dir/ part when you use $i as it's included in your glob.
If I'm not mistaken, ncftp can take wildcard arguments:
ncftpput -u username -p password x.x.x.x archives /dir/*
If you don't already have it installed, it's likely available in the standard repo for your OS.
First, the literal, fixing-your-script answer:
#!/bin/bash
# no reason to set variables that don't change inside the loop
host='x.x.x.x'
user='username'
password='password'
dir=archives
for i in /dir/*; do # no quotes if you want the wildcard to be expanded!
if [ -f "$i" ]; then # need double quotes and whitespace here!
file=$i
ftp -n "$host" <<END_SCRIPT
quote USER $user
quote PASS $password
ascii
put $file $dir/$file
quit
END_SCRIPT
fi
done
Next, the easy way:
lftp -e 'mput -a *.i' -u "$user,$password" "ftp://$host/"
(yes, lftp expands the wildcard internally, rather than expecting this to be done by the outer shell).
First of all my apologies in not making myself clear in the question. My actual task was to copy a file from local folder to a SFTP site and then move the file to an archive folder. Since the SFTP is hosted by a vendor I cannot use the key sharing (vendor limitation. Also, SCP will require password entering if used in a shell script so I have to use SSHPASS. SSHPASS is in the Ubuntu repo however for CentOS it needs to be installed from here
Current thread and How to run the sftp command with a password from Bash script? did gave me better understanding on how to write the script and I will share my solution here:
#!/bin/bash
#!/usr/bin
for i in /dir/*; do
if [ -f "$i" ]; then
file=$i
export SSHPASS=password
sshpass -e sftp -oBatchMode=no -b - user#ftp.com << !
cd foldername/foldername
put $file
bye
!
mv $file /somedir/test
fi
done
Thanks everyone for all the responses!
--Mayank

Bash script to run over ssh cannot see remote file

The script uses scp to upload a file. That works.
Now I want to log in with ssh, cd to the directory that holds the uploaded file, do an md5sum on the file. The script keeps telling me that md5sum cannot find $LOCAL_FILE. I tried escaping: \$LOCAL_FILE. Tried quoting the EOI: <<'EOI'. I'm partially understanding this, that no escaping means everything happens locally. echo pwd unescaped gives the local path. But why can I do "echo $MD5SUM > $LOCAL_FILE.md5sum", and it creates the file on the remote machine, yet "echo md5sum $LOCAL_FILE > md5sum2" does not work? And if it the local md5sum, how do I tell it to work on the remote?
scp "files/$LOCAL_FILE" "$i#$i.567.net":"$REMOTE_FILE_PATH"
ssh -T "$i#$i.567.net" <<EOI
touch I_just_logged_in
cd $REMOTE_DIRECTORY_PATH
echo `date` > I_just_changed_directories
echo `whoami` >> I_just_changed_directories
echo `pwd` >> I_just_changed_directories
echo "$MD5SUM" >> I_just_changed_directories
echo $MD5SUM > $LOCAL_FILE.md5sum
echo `md5sum $LOCAL_FILE` > md5sum2
EOI
You have to think about when $LOCAL_FILE is being interpreted. In this case, since you've used double-quotes, it's being interpreted on the sending machine. You need instead to quote the string in such a way that $LOCAL_FILE is in the command line on the receiving machine. You also need to get your "here document" correct. What you show just sends the output to touch to the ssh.
What you need will look something like
ssh -T address <'EOF'
cd $REMOTE_DIRECTORY_PATH
...
EOF
The quoting rules in bash are somewhat arcane. You might want to read up on them in Mendel Cooper's Advanced Guide to Bash Scripting.

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