PLR Installation on Mac Lion - macos

I am trying to install PL/R 8.3.0.13.1 on my MacBook Pro running OS X 10.7.5, Postgres 9.2 and R 2.15.2. I have found on the web a nice step-by-step guide for Windows but I can't find anything similar for Mac.
I got stuck when I run this command [as official documentation] ( http://www.joeconway.com/plr/doc/plr-install.html ):
USE_PGXS=1 make
Output:
make: pkg-config: Command not found
make: pkg-config: Command not found
make: pkg-config: Command not found
make: pkg-config: Command not found
make: pkg-config: Command not found
*** Cannot build PL/R because R_HOME cannot be found.
*** Refer to the documentation for details.
Clearly that means I need to create somehow R_HOME, variable and/or location...
Any idea how to do it?

The error message is actually a bit confusing. If you look at the Makefile of PL/R, the logic is that it uses R_HOME to find R when set, otherwise it tries pkg-config. You have neither set, so it bails out.
I recommend going the pkg-config route if possible. The R_HOME route appears to assume an R installation scheme that might not be universally applicable. Perhaps it applies to builds straight from source.
The above applies to all platforms. Now on OS X, it depends on how you installed R. For example, if you used MacPorts, it would go something like this:
sudo port install pkgconfig
sudo port install R
and then build PL/R itself:
make USE_PGXS=1
But that will break because PL/R does not expect that MacPorts separates the R headers into two separate directories (architecture-dependent and -independent I suppose).
Homebrew might work better, but the principle is the same.

You need to figure out what you should set your PLR environment R_HOME variable. In a terminal session I get this
computername:~ username$ R RHOME #only enter stuff after"$"
/Library/Frameworks/R.framework/Resources
This is at the bottom of that page you linked to:
"Tip: R_HOME must be defined in the environment of the user under which PostgreSQL is started, before the postmaster is started. Otherwise PL/R will refuse to load. See plr_environ(), which allows examination of the environment available to the PostgreSQL postmaster process. "
This is from a webpage describing the problem and offering a fix:
To fix: Add a "R_HOME = '/usr/lib/R' " to /etc/postgresql/version/cluster/environmen
Example Fix for version 8.1:
$ sudo -s
# echo -e "\nR_HOME = '/usr/lib/R'" >> /etc/postgresql/8.1/main/environment
# exit
To Test:
$ sudo /etc/init.d/postgresql-8.1 restart
$ sudo -u postgres psql plr_test
plr_test=# select test();
test
------

Related

Can't install cargo-binutils library: Failed to find tool. Is `gcc.exe` installed?

When I run cargo install cargo-binutils, I get the below error. I have gcc installed and in my path, to the point where where gcc correctly returns the location.
gcc version: gcc.exe (i686-posix-dwarf-rev0, Built by MinGW-W64 project) 8.1.0
I couldn't find a solution to work, including the explanation in the link listed in the error. I'm on Windows 10.
error: failed to run custom build command for \`backtrace-sys v0.1.37`
Caused by:
process didn't exit successfully: \`C:\Users\blahblah\AppData\Local\Temp\cargo-installEvEWRS\release\build\backtrace-sys-075604757ab74d2a\build-script-build` (exit code: 1)
--- stdout
cargo:rustc-cfg=rbt
TARGET = Some("x86_64-pc-windows-gnu")
OPT_LEVEL = Some("3")
HOST = Some("x86_64-pc-windows-gnu")
CC_x86_64-pc-windows-gnu = None
CC_x86_64_pc_windows_gnu = None
HOST_CC = None
CC = None
CFLAGS_x86_64-pc-windows-gnu = None
CFLAGS_x86_64_pc_windows_gnu = None
HOST_CFLAGS = None
CFLAGS = None
CRATE_CC_NO_DEFAULTS = None
DEBUG = Some("false")
CARGO_CFG_TARGET_FEATURE = Some("fxsr,sse,sse2")
running: "gcc.exe" "-O3" "-ffunction-sections" "-fdata-sections" "-m64" "-I" "src/libbacktrace" "-I" "C:\\Users\\BRENDA~1.BUR\\AppData\\Local\\Temp\\cargo-installEvEWRS\\release\\build\\backtra
ce-sys-1e77a4d4c3ba2eda\\out" "-fvisibility=hidden" "-DBACKTRACE_SUPPORTED=1" "-DBACKTRACE_USES_MALLOC=1" "-DBACKTRACE_SUPPORTS_THREADS=0" "-DBACKTRACE_SUPPORTS_DATA=0" "-DHAVE_DL_ITERATE_PHDR=
1" "-D_GNU_SOURCE=1" "-D_LARGE_FILES=1" "-Dbacktrace_full=__rbt_backtrace_full" "-Dbacktrace_dwarf_add=__rbt_backtrace_dwarf_add" "-Dbacktrace_initialize=__rbt_backtrace_initialize" "-Dbacktrac
e_pcinfo=__rbt_backtrace_pcinfo" "-Dbacktrace_syminfo=__rbt_backtrace_syminfo" "-Dbacktrace_get_view=__rbt_backtrace_get_view" "-Dbacktrace_release_view=__rbt_backtrace_release_view" "-Dbacktra
ce_alloc=__rbt_backtrace_alloc" "-Dbacktrace_free=__rbt_backtrace_free" "-Dbacktrace_vector_finish=__rbt_backtrace_vector_finish" "-Dbacktrace_vector_grow=__rbt_backtrace_vector_grow" "-Dbacktr
ace_vector_release=__rbt_backtrace_vector_release" "-Dbacktrace_close=__rbt_backtrace_close" "-Dbacktrace_open=__rbt_backtrace_open" "-Dbacktrace_print=__rbt_backtrace_print" "-Dbacktrace_simpl
e=__rbt_backtrace_simple" "-Dbacktrace_qsort=__rbt_backtrace_qsort" "-Dbacktrace_create_state=__rbt_backtrace_create_state" "-Dbacktrace_uncompress_zdebug=__rbt_backtrace_uncompress_zdebug" "-D
macho_get_view=__rbt_macho_get_view" "-Dmacho_symbol_type_relevant=__rbt_macho_symbol_type_relevant" "-Dmacho_get_commands=__rbt_macho_get_commands" "-Dmacho_try_dsym=__rbt_macho_try_dsym" "-Dm
acho_try_dwarf=__rbt_macho_try_dwarf" "-Dmacho_get_addr_range=__rbt_macho_get_addr_range" "-Dmacho_get_uuid=__rbt_macho_get_uuid" "-Dmacho_add=__rbt_macho_add" "-Dmacho_add_symtab=__rbt_macho_a
dd_symtab" "-Dmacho_file_to_host_u64=__rbt_macho_file_to_host_u64" "-Dmacho_file_to_host_u32=__rbt_macho_file_to_host_u32" "-Dmacho_file_to_host_u16=__rbt_macho_file_to_host_u16" "-o" "C:\\User
s\\BRENDA~1.BUR\\AppData\\Local\\Temp\\cargo-installEvEWRS\\release\\build\\backtrace-sys-1e77a4d4c3ba2eda\\out\\src/libbacktrace/alloc.o" "-c" "src/libbacktrace/alloc.c"
--- stderr
error occurred: Failed to find tool. Is `gcc.exe` installed? (see https://github.com/alexcrichton/cc-rs#compile-time-requirements for help)
https://github.com/alexcrichton/cc-rs#compile-time-requirements says:
Windows platforms targeting MinGW (e.g. your target triple ends in -gnu)
require cc to be available in PATH. We recommend the
MinGW-w64 distribution, which is using the
Win-builds installation system.
You may also acquire it via
MSYS2, as explained [here][msys2-help]. Make sure
to install the appropriate architecture corresponding to your installation of
rustc. GCC from older MinGW project is compatible
only with 32-bit rust compiler.
Try creating a symlink or hardlink to GCC called cc, somewhere on your path.
This happened to me as well. In my case I got:
failed to run custom build command for zstd-sys v2.0.1+zstd.1.5.2
Caused by: process didn't exit successfully:
C:\Users\asili\Documents\Programming\zero2prod\target\debug\build\zstd-sys-f37cc8bfd3eec6ac\build-script-build
(exit code: 1)
error occurred: Failed to find tool. Is gcc.exe installed? (see
https://github.com/alexcrichton/cc-rs#compile-time-requirements for
help)
I was able to solve it by following the steps on installing the Visual C++ extension from the VS Code marketplace.
This is how I did it:
Go to MSYS2.org https://www.msys2.org/ (You will also see the installation steps on the site, in case this answer gets outdated).
Download and install msys2-x86_64-20220603.exe (or whichever version is current). The installation is pretty straightforward, just take a note on the installation path as you will need to add this to the environment PATH later on.
A new program called "MSYS2" should've been installed. Open it, and you'll see a terminal window in it. You will run ALL of the commands mentioned below in this terminal. If you close it, open it again.
Run:
pacman -Syu
This will update the packages and databases.
Run (Again - This step may not be needed, but is recommended by MSYS2 in case packages need an additional updates.)
pacman -Syu
Run:
pacman -S --needed base-devel mingw-w64-x86_64-toolchain
You will now see a selection of all the packages. If you don't know which to choose, just press enter on your keyboard and you shall get all of them (that's what I ended up doing).
After that, gcc.exe will be installed the bin folder of mingw64. Therefore:
Add theC:\msys64\mingw64\bin file path to your path environment variable (or Wherever you decided to install it).
In case you need assistance on adding to the path, check out this link.
Remember to restart your CMD/Windows Terminal/Power Shell for the environment path to take place.

How to install unison from source on macOS

I was wondering whether somebody managed to install unison's latest version from source, on its macOS machine (Here I am trying with Catalina). I followed the steps here :
I verified that I had XCode installed (otherwise forget about compiling anything :)
I cloned the official Git repository by running
git clone https://github.com/bcpierce00/unison.git
I moved to the newly created directory unison
cd unison
As mentionned in the documentation I then ran the make command telling it to build the text UI:
make UISTYLE=text
Result should have been an executable file called unisonbut instead of this I got the following error :
Blablabla$ make UISTYLE=text
/Applications/Xcode.app/Contents/Developer/usr/bin/make -C src UISTYLE=text
UISTYLE = text
Building for Unix
NATIVE = true
THREADS = false
STATIC = false
OSTYPE =
OSARCH = osx
ocamlopt: ubase/rx.mli ---> ubase/rx.cmi
ocamlopt -g -unsafe-string -I lwt -I ubase -I system -I fsmonitor -I fsmonitor/linux -I fsmonitor/windows -I system/generic -I lwt/generic -ccopt -mmacosx-version-min=10.6 -c /Users/Shared/unison/src/ubase/rx.mli
make[1]: ocamlopt: No such file or directory
make[1]: *** [ubase/rx.cmi] Error 1
make: *** [text] Error 2
I then wondered whether XCode might not carry with him an OCaml compiler. So I installed the official one using MacPort therefore running:
sudo port install ocaml
sudo port install opam
I then rerun the same make command
make UISTYLE=text
This time the result looked better and ended with:
/Applications/Xcode.app/Contents/Developer/usr/bin/make tags
if [ -f "`which etags`" ]; then \
etags *.mli */*.mli *.ml */*.ml */*.m *.c */*.c *.txt \
*Makefile* \
; fi
However, still no unison file visible anywhere.
Question is ... since there is no error message, where is this executable?
Re-hello people from the Internet,
I managed to help myself here and got a nice and fresh unison executable on my macOS Catalina computer.
Basically, the base make tries to move the compilation product into /Users/<your_user>/bin/. which makes sense I guess, but is rarely used by us macOS users. So here is what I did to fix the issue :
Create the bin directory into your home
mkdir ~/bin
Re run the make by doing
make UISTYLE=text
Verify you have the executable by asking its version:
~/bin/unison -version
Happy me, I got the expected message back from my terminal:
unison version 2.51.3 (ocaml 4.08.1)
Hope it can help somebody.

FreeBSD make error File 5.19 supports only version 12 magic files. /usr/share/misc/magic.mgc is version 8

I'm having trouble reinstalling ProFTPD on a FreeBSD 10.1 setup. The server is newly upgraded from 10.0 to 10.1. When I start the make install clean process, these warnings first shows on screen.
===> proftpd-1.3.5_4 depends on shared library: libpcre.so
/usr/share/misc/magic, 93: Warning: Printf format `l' is not valid for type `lelong' in description `, %ld pages'
...
/usr/share/misc/magic, 15118: Warning: Printf format `l' is not valid for type `belong' in description `Volume %ld,'
/usr/share/misc/magic, 15609: Warning: Current entry does not yet have a description for adding a MIME type
file: File 5.19 supports only version 12 magic files. `/usr/share/misc/magic.mgc' is version 8
[: =: unexpected operator
- not found
And after i while, the make process stops with this error:
/bin/ln -s libpcre.so.1 /usr/ports/devel/pcre/work/stage/usr/local/lib/libpcre.so.3
====> Compressing man pages (compress-man)
===> Installing for pcre-8.35_2
===> Checking if pcre already installed
===> pcre-8.35_2 is already installed
You may wish to ``make deinstall'' and install this port again
by ``make reinstall'' to upgrade it properly.
If you really wish to overwrite the old port of pcre
without deleting it first, set the variable "FORCE_PKG_REGISTER"
in your environment or the "make install" command line.
*** Error code 1
Stop.
make[3]: stopped in /usr/ports/devel/pcre
*** Error code 1
Stop.
make[2]: stopped in /usr/ports/devel/pcre
*** Error code 1
Stop.
make[1]: stopped in /usr/ports/ftp/proftpd
*** Error code 1
Stop.
make: stopped in /usr/ports/ftp/proftpd
Seems that the file /usr/share/misc/magic.mgc is of a wrong version?
This might happens when I was upgrading from 10.0-RELEASE-p12 to 10.1-RELESE-p1?
If i run make install clean of the ProFTP port, and disable support for pcre, the process and install is successful.
But I believe that something is still broken?
My programming skills are limited, and also this level of error.
Please let me know if you have any ideas,
Thanks,
First of all, proftpd 1.3.5 is available as a binary package, it's much simpler to install it that way (pkg install proftpd).
Second - at first it looked like a port bug; as Etan said, there is a shell syntax error (something like '[ x == y ]' instead of '[ x = y ]'); those are common, and ports contain patches to fix those. However, there is a binary package, and packages are built from ports ("make package"), so port obviously does work on package build machines. So it's probably something specific to your environment.
If you really want to build from ports, try this: first, reinstall pcre. For some reason it had to be rebuilt, but failed to install, because it's already installed. So, "cd /usr/ports/*/pcre && make clean all deinstall reinstall". That should get rid of the second error. Then go back to "../*/proftpd" and see how far it goes.
But really, I'd try packages first. They have nothing in common with old pkg_add system, and are really nice.
freebsd-update diff for FreeBSD-SA-14:28.file seems wrong, and it breaks file(1).
Therefore simply pkg install file will be a workaround.

Can not call acpi_call method in ubuntun 12.10

I have a notebook has a optimus graphic cards(Nvidia). So I want to relax notebook with acpi_call method. But error is given. I had downloaded acpi_call_master from this web page: (https://github.com/mkottman/acpi_call)
Then this zip is exracted by me, and following code is called in terminal by me. However these errors are given:
dagli#dagli-Inspiron-N5110:~/acpi_call-master$ ls
acpi_call.c examples Makefile README.md support
dagli#dagli-Inspiron-N5110:~/acpi_call-master$ sudo make
make -C /lib/modules/3.5.0-17-generic/build M=/home/dagli/acpi_call-master modules
make: *** /lib/modules/3.5.0-17-generic/build: Böyle bir dosya ya da dizin yok. Durdu.
make: *** [default] Hata 2
This is a kernel module and as such requires the Linux kernel headers to build. In many cases you should be able to identify the package that would provide that file using dpkg such as:
dpkg --search /lib/modules/3.5.0-17-generic/build
You can do the same on the Ubuntu package site. Though it didn't exactly work, the package you need will be something like linux-headers-3.5.0-17-generic. There do appear to be both x86 (32-bit) and x64 options. See if the following works:
sudo apt-get install linux-headers-3.5.0-17-generic
Remember that you will have to learn how to configure/load kernel modules to make this work. It is not a standard user program.

Help Installing psycopg2 on snow leopard : command '/usr/bin/gcc-4.0' failed with exit status 1

This has been driving me crazy for 2 days.
I have been trying to install psycopg2 using easy_install and no matter what I try (i.e using gcc-4.0 instead of the snow leopard default one) I always get the same error:
error: Setup script exited with error: command '/usr/bin/gcc-4.0' failed with exit status 1
Please see: http://dpaste.com/hold/228252/
I have googled that error so many times and nothing I have found seem to help.
Looks like you're missing a dependency, the development files for libpq. The relevant log part is here:
In file included from psycopg/psycopgmodule.c:32In file included from psycopg/psycopgmodule.c:32:
./psycopg/psycopg.h:31:22: error: libpq-fe.h: No such file or directory
Try installing libpq development files and then rerun easy_install. You may hit another missing dependency; pay attention to the first error that GCC spits out.
Link http://dpaste.com/hold/228252/ seems to be dead, this is how I solved this problem (Mac OS X 10.6, virtualenv).
If pip fails with this message, just take a look to build folder in your virtual environment. You should edit setup.cfg file there, particularly include_dirs and library_dirs. In first one set your include folders, my option was:
include_dirs=/opt/local/include/postgresql84:/opt/local/include/postgresql84/server
and most likely you will need to set library_dirs to correct location as well:
library_dirs=/opt/local/lib/postgresql84.
probably you should install postgresql-devel first
yum -y install postgresql-devel

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