gcc shared library linked incorrect in ubuntu 12.04 - gcc

cat /etc/issue
Ubuntu 12.04.2 LTS \n \l
gcc --version
gcc (Ubuntu/Linaro 4.6.3-1ubuntu5) 4.6.3
CFLAGS = -g -O2 -Wall -fPIC -c $(INCLUDES)
OFLAGS = -g -O2 -shared -Wall $(LIBS) -Wl,-soname,$(TARGET_NAME)
A cpp so, When I linked the so over, the dependency libs do not appear in ldd result. It's OK in CentOS6.3. the LD_LIBRARY_PATH is set OK because the ELF executable file I made is OK.
Thank you in advance.

Related

GCC libc versions [duplicate]

Consider the situation when a C++ project is built and shipped within a Centos 7 virtual machine or container. Default gcc for Centos 7 is 4.8. In order to allow developers to use modern C++, the more recent version of gcc (for example, 6.3) is installed into Centos 7 which runs as a CI server. This provides -std=c++14 support.
[builder#f7279ae9f33f build (master %)]$ /usr/bin/c++ -v 2>&1 | grep version
gcc version 4.8.5 20150623 (Red Hat 4.8.5-28) (GCC)
[builder#f7279ae9f33f build (master %)]$ /opt/rh/devtoolset-6/root/usr/bin/c++ -v 2>&1 | grep version
gcc version 6.3.1 20170216 (Red Hat 6.3.1-3) (GCC)
export CXX=/opt/rh/devtoolset-6/root/usr/bin/c++
make all -j4
...
This is short example of compilation and linkage command:
[ 78%] Building CXX object CMakeFiles/ucsdos.dir/src/merge_operator_string.cpp.o
/opt/rh/devtoolset-6/root/usr/bin/c++ -Ducsdos_EXPORTS -I/home/builder/src/dos/libucsdos/./src -I/home/builder/src/dos/libucsdos/./include -I/home/builder/src/dos/libucsdos/build/schema/cpp -I/home/builder/src/dos/libucsdos/build/schema -isystem /usr/local/include -O2 -g -DNDEBUG -fPIC -frtti -pedantic -Wall -Wextra -Wcast-align -Wcast-qual -Wctor-dtor-privacy -Wdisabled-optimization -Wformat=2 -Winit-self -Wlogical-op -Wmissing-declarations -Wmissing-include-dirs -Wnoexcept -Wold-style-cast -Woverloaded-virtual -Wredundant-decls -Wshadow -Wsign-conversion -Wsign-promo -Wstrict-null-sentinel -Wstrict-overflow=5 -Wswitch-default -Wundef -Werror -Wno-unused -std=gnu++14 -o CMakeFiles/ucsdos.dir/src/merge_operator_string.cpp.o -c /home/builder/src/dos/libucsdos/src/merge_operator_string.cpp
[ 80%] Linking CXX shared library libucsdos.so
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/ucsdos.dir/link.txt --verbose=1
/opt/rh/devtoolset-6/root/usr/bin/c++ -fPIC -O2 -g -DNDEBUG -shared -Wl,-soname,libucsdos.so.0 -o libucsdos.so.0.3.23 CMakeFiles/ucsdos.dir/src/c.cpp.o CMakeFiles/ucsdos.dir/src/crdt_2p_set.cpp.o CMakeFiles/ucsdos.dir/src/crdt_pn_counter.cpp.o CMakeFiles/ucsdos.dir/src/errors.cpp.o CMakeFiles/ucsdos.dir/src/merge_index_document.cpp.o CMakeFiles/ucsdos.dir/src/merge_index_segment.cpp.o CMakeFiles/ucsdos.dir/src/merge_operator_string.cpp.o -Wl,-rpath,/usr/local/lib: schema/libschema.a /usr/lib64/librocksdb.so /usr/lib64/libjemalloc.so /usr/local/lib/libgrpc++_reflection.so /usr/local/lib/libgrpc++.so /usr/local/lib/libgrpc.so -ldl -lgrpc++ /usr/lib64/libprotobuf.so -lpthread /usr/lib64/libprotobuf-lite.so
Anyway, the resulting artifacts appear to be linked with system default version of libstdc++:
[builder#f7279ae9f33f build (master %)]$ ldd libucsdos.so | grep libstdc++.so.6
libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f2a4a054000)
It's easy to find out that /lib64/libstdc++.so.6 version is 4.8.5:
[builder#f7279ae9f33f build (master %)]$ yum whatprovides "/lib64/libstdc++.so.6"
libstdc++-4.8.5-28.el7_5.1.x86_64 : GNU Standard C++ Library
Repo : #Updates
Matched from:
Filename : /lib64/libstdc++.so.6
Is this build environment configuration valid?
Anyway, the resulting artifacts appear to be linked with system default version of libstdc++:
Yes. The devtoolset-6-gcc-c++ package provides a custom version of GCC that uses a special linker script instead of a dynamic library for libstdc++.so. That means the binaries it produces do not depend on the newer libstdc++.so.6 and can be run on other CentOS machines that don't have devtoolset installed (i.e. they only have the older libstdc++ library from GCC 4.8).
Is this build environment configuration valid?
Yes. What you're seeing is completely normal, and how it's supposed to work.
The pieces of the newer C++ runtime from GCC 6.4.0 get statically linked into your binary, and at runtime it only depends on the old libstdc++.so which every CentOS system has installed.
That's the whole point of the devtoolset version of GCC.

How can libstdc++ from devtoolset-7 be linked against when building on CentOS 7? [duplicate]

Consider the situation when a C++ project is built and shipped within a Centos 7 virtual machine or container. Default gcc for Centos 7 is 4.8. In order to allow developers to use modern C++, the more recent version of gcc (for example, 6.3) is installed into Centos 7 which runs as a CI server. This provides -std=c++14 support.
[builder#f7279ae9f33f build (master %)]$ /usr/bin/c++ -v 2>&1 | grep version
gcc version 4.8.5 20150623 (Red Hat 4.8.5-28) (GCC)
[builder#f7279ae9f33f build (master %)]$ /opt/rh/devtoolset-6/root/usr/bin/c++ -v 2>&1 | grep version
gcc version 6.3.1 20170216 (Red Hat 6.3.1-3) (GCC)
export CXX=/opt/rh/devtoolset-6/root/usr/bin/c++
make all -j4
...
This is short example of compilation and linkage command:
[ 78%] Building CXX object CMakeFiles/ucsdos.dir/src/merge_operator_string.cpp.o
/opt/rh/devtoolset-6/root/usr/bin/c++ -Ducsdos_EXPORTS -I/home/builder/src/dos/libucsdos/./src -I/home/builder/src/dos/libucsdos/./include -I/home/builder/src/dos/libucsdos/build/schema/cpp -I/home/builder/src/dos/libucsdos/build/schema -isystem /usr/local/include -O2 -g -DNDEBUG -fPIC -frtti -pedantic -Wall -Wextra -Wcast-align -Wcast-qual -Wctor-dtor-privacy -Wdisabled-optimization -Wformat=2 -Winit-self -Wlogical-op -Wmissing-declarations -Wmissing-include-dirs -Wnoexcept -Wold-style-cast -Woverloaded-virtual -Wredundant-decls -Wshadow -Wsign-conversion -Wsign-promo -Wstrict-null-sentinel -Wstrict-overflow=5 -Wswitch-default -Wundef -Werror -Wno-unused -std=gnu++14 -o CMakeFiles/ucsdos.dir/src/merge_operator_string.cpp.o -c /home/builder/src/dos/libucsdos/src/merge_operator_string.cpp
[ 80%] Linking CXX shared library libucsdos.so
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/ucsdos.dir/link.txt --verbose=1
/opt/rh/devtoolset-6/root/usr/bin/c++ -fPIC -O2 -g -DNDEBUG -shared -Wl,-soname,libucsdos.so.0 -o libucsdos.so.0.3.23 CMakeFiles/ucsdos.dir/src/c.cpp.o CMakeFiles/ucsdos.dir/src/crdt_2p_set.cpp.o CMakeFiles/ucsdos.dir/src/crdt_pn_counter.cpp.o CMakeFiles/ucsdos.dir/src/errors.cpp.o CMakeFiles/ucsdos.dir/src/merge_index_document.cpp.o CMakeFiles/ucsdos.dir/src/merge_index_segment.cpp.o CMakeFiles/ucsdos.dir/src/merge_operator_string.cpp.o -Wl,-rpath,/usr/local/lib: schema/libschema.a /usr/lib64/librocksdb.so /usr/lib64/libjemalloc.so /usr/local/lib/libgrpc++_reflection.so /usr/local/lib/libgrpc++.so /usr/local/lib/libgrpc.so -ldl -lgrpc++ /usr/lib64/libprotobuf.so -lpthread /usr/lib64/libprotobuf-lite.so
Anyway, the resulting artifacts appear to be linked with system default version of libstdc++:
[builder#f7279ae9f33f build (master %)]$ ldd libucsdos.so | grep libstdc++.so.6
libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f2a4a054000)
It's easy to find out that /lib64/libstdc++.so.6 version is 4.8.5:
[builder#f7279ae9f33f build (master %)]$ yum whatprovides "/lib64/libstdc++.so.6"
libstdc++-4.8.5-28.el7_5.1.x86_64 : GNU Standard C++ Library
Repo : #Updates
Matched from:
Filename : /lib64/libstdc++.so.6
Is this build environment configuration valid?
Anyway, the resulting artifacts appear to be linked with system default version of libstdc++:
Yes. The devtoolset-6-gcc-c++ package provides a custom version of GCC that uses a special linker script instead of a dynamic library for libstdc++.so. That means the binaries it produces do not depend on the newer libstdc++.so.6 and can be run on other CentOS machines that don't have devtoolset installed (i.e. they only have the older libstdc++ library from GCC 4.8).
Is this build environment configuration valid?
Yes. What you're seeing is completely normal, and how it's supposed to work.
The pieces of the newer C++ runtime from GCC 6.4.0 get statically linked into your binary, and at runtime it only depends on the old libstdc++.so which every CentOS system has installed.
That's the whole point of the devtoolset version of GCC.

Conflicting declaration while compiling 6.3.0 gcc

Ubuntu Xenial, x86_64
Compiling 6.3.0 gcc
nativ gcc version is 5.4.0
Error Source:
g++ -c -g -O2 -DIN_GCC -DCROSS_DIRECTORY_STRUCTURE -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings -DHAVE_CONFIG_H -DGENERATOR_FILE -fno-PIE -I. -Ibuild -I../../gcc-6.3.0/gcc -I../../gcc-6.3.0/gcc/build -I../../gcc-6.3.0/gcc/../include -I../../gcc-6.3.0/gcc/../libcpp/include \
-o build/genmddeps.o ../../gcc-6.3.0/gcc/genmddeps.c
Error:
In file included from ./bconfig.h:3:0,
from ../../gcc-6.3.0/gcc/genmddeps.c:18:
./auto-host.h:2321:16: error: declaration does not declare anything [-fpermissive]
#define rlim_t long
^
In file included from ../../gcc-6.3.0/gcc/genmddeps.c:19:0:
../../gcc-6.3.0/gcc/system.h:488:23: error: conflicting declaration of C function ‘void* sbrk(int)’
extern void *sbrk (int);
^
I am trying to compile gcc from scratch. My config options are
../gcc-6.3.0/configure --target=arm-eabi --prefix=/local/development/arm-project/tools/ --enable-languages=c --with-newlib --without-headers
Can anyone please help with debugging?
Try (and edit accordingly):
tar xzf gcc-6.3.0.tar.gz
cd gcc-6.3.0
./contrib/download_prerequisites
cd ..
mkdir objdir
cd objdir
$PWD/../gcc-6.3.0/configure --prefix=$HOME/GCC-6.3.0 --enable-languages=c,c++
make
make install
Source: Installing GCC
I could resolve this issue, by installing gmp-devel, mpfr-devel and libmpc-devel. See GCC docs for details.
There are some additional requirements for GCC 9.1.0 such as DejaGnu 1.6.2 and GDB 8.3 (solved my libiberty make target error).
If you have more than one compiler installed, use the GCC compiler:
export CC=gcc
export CXX=g++

ld cannot find -l<library>

I am having trouble installing pyipopt on ubuntu 12.04. During linking, I receive the error:
/usr/bin/ld: cannot find -lcoinhsl
Even though I know that this library is installed and the .so and .la files are available in /home/mostafa/MyBuilds/CoinIpopt/build/lib/
does anyone have a solution for this?
below is the complete return of running setup.py build:
root#ubuntu:~/MyBuilds/pyipopt# sudo python setup.py build
running build
running build_ext
building 'pyipopt' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/home/mostafa/MyBuilds/CoinIpopt/build/include/coin/ -I/usr/include/python2.7 -c src/callback.c -o build/temp.linux-x86_64-2.7/src/callback.o
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/home/mostafa/MyBuilds/CoinIpopt/build/include/coin/ -I/usr/include/python2.7 -c src/pyipopt.c -o build/temp.linux-x86_64-2.7/src/pyipopt.o
src/pyipopt.c: In function ‘set_intermediate_callback’:
src/pyipopt.c:452:15: warning: variable ‘myowndata’ set but not used [-Wunused-but-set-variable]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relrobuild/temp.linux-x86_64-2.7/src/callback.o build/temp.linux-x86_64-2.7/src/pyipopt.o -L/home/mostafa/MyBuilds/CoinIpopt/build/lib/ -lipopt -lblas -lcoinhsl -lcoinmetis -llapack -ldl -lm -o build/lib.linux-x86_64-2.7/pyipopt.so -Wl,--rpath -Wl,/home/mostafa/MyBuilds/CoinIpopt/build/lib/
/usr/bin/ld: cannot find -lcoinhsl
collect2: ld returned 1 exit status
error: command 'gcc' failed with exit status 1
-Ldir
Add directory dir to the list of directories to be searched for -l.
You may install your coinhsl library in one of your standard libraries directories and run 'ldconfig` before doing your ppyipopt install
I had a similar problem with another library and the reason why it didn't found it, was that I didn't run the make install (after running ./configure and make) for that library. The make install may require root privileges (in this case use: sudo make install). After running the make install you should have the so files in the correct folder, i.e. here /usr/local/lib and not in the folder mentioned by you.
you can add the Path to coinhsl lib to LD_LIBRARY_PATH variable. May be that will help.
export LD_LIBRARY_PATH=/xx/yy/zz:$LD_LIBRARY_PATH
where /xx/yy/zz represent the path to coinhsl lib.

"internal compiler error" from yajl-ruby build on OpenSUSE 12.1

As a requirement for chef-client, I am trying to install yajl-ruby on OpenSUSE 12.1. So far, it is returning the following message:
linux:~ # gem install yajl-ruby
Building native extensions. This could take a while...
ERROR: Error installing yajl-ruby:
ERROR: Failed to build gem native extension.
/usr/bin/ruby extconf.rb
creating Makefile
make
gcc -I. -I/usr/lib64/ruby/1.8/x86_64-linux -I/usr/lib64/ruby/1.8/x86_64-linux -I. -fPIC -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -g -fno-strict-aliasing -fPIC -Wall -funroll-loops -c yajl.c
gcc -I. -I/usr/lib64/ruby/1.8/x86_64-linux -I/usr/lib64/ruby/1.8/x86_64-linux -I. -fPIC -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -g -fno-strict-aliasing -fPIC -Wall -funroll-loops -c yajl_alloc.c
gcc -I. -I/usr/lib64/ruby/1.8/x86_64-linux -I/usr/lib64/ruby/1.8/x86_64-linux -I. -fPIC -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -g -fno-strict-aliasing -fPIC -Wall -funroll-loops -c yajl_buf.c
gcc -I. -I/usr/lib64/ruby/1.8/x86_64-linux -I/usr/lib64/ruby/1.8/x86_64-linux -I. -fPIC -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -g -g -fno-strict-aliasing -fPIC -Wall -funroll-loops -c yajl_encode.c
yajl_encode.c: In function ‘hexToDigit’:
yajl_encode.c:201:1: internal compiler error: Aborted
Please submit a full bug report,
with preprocessed source if appropriate.
See <http://bugs.opensuse.org/> for instructions.
make: *** [yajl_encode.o] Error 1
Gem files will remain installed in /usr/lib64/ruby/gems/1.8/gems/yajl-ruby-1.1.0 for inspection.
Results logged to /usr/lib64/ruby/gems/1.8/gems/yajl-ruby-1.1.0/ext/yajl/gem_make.out
The appropriate packages are installed:
zypper install ruby ruby-devel ruby-ri ruby-rdoc ruby-shadow gcc gcc-c++ automake autoconf make curl dmidecode
It may be an issue with the compiler or there may be an issue specific on OpenSUSE. So far, I am not sure which path to take.
gcc clearly recommends you to send bug report to OpenSuse with full preprocessed source (-E option instead of "-c" and add a redirect to file). This may be because opensuse gcc might have some modifications. You should check instructions on bugs.opensuse.org and send a bug report to OpenSuse. If the bug is in basic gcc too, opensuse bugzilla people will forward it upstream or will ask you to do this
To avoid an "internal compiler error" without sending bugs you can try to change build options. Usually "internal compiler error" means that something goes wrong in complex process of optimizations, so you can just change this process (order of optimization stages and which are enabled). Easiest is to change level of optimization (e.g. replace -O2 with -O1 or -O0) or add something like -Osize.

Resources