Hi I am trying to setup the hadoop environment. In short the problem which I am trying to solve involves billions of XML files of size few MB, extract relevant information from them using HIVE and do some analytic work with the information. I know this is a trivial problem in hadoop world but if Hadoop solution works well for me than size and number of files I will be dealing will increase in geometric progession form.
I did research by referring various books like "Hadoop - the definite guide", "Hadoop in action". Resources like documents by yahoo and hortonworks. I am not able to figure out the hardware /software specifications for establishing the hadoop environment. In the resources which I had referred so far I had kind of found standard solutions like
Namenode/JobTracker (2 x 1Gb/s Ethernet, 16 GB of RAM, 4xCPU, 100 GB disk)
Datanode (2 x 1Gb/s Ethernet, 8 GB of RAM, 4xCPU, Multiple disks with total amount
of 500+ GB)
but if anyone can give some suggestions that will be great. Thanks
First I would suggest you to consider: what do you need more processing + some storage or opposite, and from this view select hardware. Your case sounds more processing then storage.
I would specify a bit differently standard hardware for hadoop
NameNode: High quality disk in mirror, 16 GB HDD.
Data Nodes: 16-24 GB RAM, Dual Quad or Dual six cores CPU, 4 to 6 1-2-3 SATA TB Drives.
I would also consider 10 GBit option. I think if it does not add more then 15% of cluster price - it makes sense. 15% came from rough estimation that data shipping from mappers to reducers takes about 15% of job time.
In your case I would be more willing to sacrifice disc sizes to save money, but not CPU/Memory/number of drives.
"extract relevant information from them using HIVE"
That is going to be a bit tricky since hive doesn't really do well with xml files.
you are going to want to build a parsing script in another language (ruby, python, perl, etc) that can parse the xml files and produce columnar output that you will load into hive. You can then use hive to call that external parsing script with a transform, or just use hadoopstreaming to prepare the data for hive.
Then it is just a matter of how fast you need the work done and how much space you need to hold the amount of data you are going to have.
you could build the process with a handful of files on a single system to test it. But you really need to have a better handle on your overall planned workload to properly scale your cluster. Minimum production cluster size would be 3 or 4 machines at a minimum, just for data redundancy. Beyond that, add nodes as necessary to meet your workload needs.
Related
I have 50 GB dataset which doesn't fit in 8 GB RAM of my work computer but it has 1 TB local hard disk.
The below link from offical documentation mentions that Spark can use local hard disk if data doesnt fit in the memory.
http://spark.apache.org/docs/latest/hardware-provisioning.html
Local Disks
While Spark can perform a lot of its computation in memory, it still
uses local disks to store data that doesn’t fit in RAM, as well as to
preserve intermediate output between stages.
For me computational time is not at all a priority but fitting the data into a single computer's RAM/hard disk for processing is more important due to lack of alternate options.
Note:
I am looking for a solution which doesn't include the below items
Increase the RAM
Sample & reduce data size
Use cloud or cluster computers
My end objective is to use Spark MLLIB to build machine learning models.
I am looking for real-life, practical solutions that people successfully used Spark to operate on data that doesn't fit in RAM in standalone/local mode in a single computer. Have someone done this successfully without major limitations?
Questions
SAS have similar capability of out-of-core processing using which it can use both RAM & local hard disk for model building etc. Can Spark be made to work in the same way when data is more than RAM size?
SAS writes persistent the complete dataset to hardisk in ".sas7bdat" format can Spark do similar persistent to hard disk?
If this is possible, how to install and configure Spark for this purpose?
Look at http://spark.apache.org/docs/latest/programming-guide.html#rdd-persistence
You can use various persistence models as per your need. MEMORY_AND_DISK is what will solve your problem . If you want a better performance, use MEMORY_AND_DISK_SER which stores data in serialized fashion.
I want to analyze 7TB of data and store the output in a database, say HBase.
My monthly increment is 500GB, but to analyze 500GB data I don't need to go through 7TB of data again.
Currently I am thinking of using Hadoop with Hive for analyzing the data, and
Hadoop with MapReducer and HBase to process and store the data.
At the moment I have 5 machines of following configuration:
Data Node Server Configuration: 2-2.5 Ghz hexa core CPU, 48 GB RAM, 1 TB -7200 RPM (X 8)
Number of data nodes: 5
Name Node Server: Enterprise class server configuration (X 2) (1 additional for secondary
I want to know if the above process is sufficient given the requirements, and if anyone has any suggestions.
Sizing
There is a formula given by Hortonworks to calculate your sizing
((Initial Size + YOY Growth + Intermediate Data Size) * Repl Cpount * 1.2) /Comp Ratio
Assuming default vars
repl_count == 3 (default)
comp_ration = 3-4 (default)
Intermediate data size = 30%-50% of raw data size .-
1,2 factor - temp space
So for your first year, you will need 16.9 TB. You have 8TB*5 == 40. So space is not the topic.
Performance
5 Datanodes. Reading 1 TB takes in average 2.5 hours (source Hadoop - The definitive guide) on a single drive. 600 GB with one drive would be 1.5 hours. Estimating that you have replicated so that you can use all 5 nodes in parallel, it means reading the whole data with 5 nodes can get up to 18 minutes.
You may have to add some more time time depending on what you do with your queries and how have configured your data processing.
Memory consumution
48 GB is not much. The default RAM for many data nodes is starting from 128 GB. If you use the cluster only for processing, it might work out. Depending also a bit, how you configure the cluster and which technologies you use for processing. If you have concurrent access, it is likely that you might run into heap errors.
To sum it up:
It depends much what you want to do with you cluster and how complex your queries are. Also keep in mind that concurrent access could create problems.
If 18 minutes processing time for 600 GB data (as a baseline - real values depend on much factors unknown answering that questions) is enough and you do not have concurrent access, go for it.
I would recommend transforming the data on arrival. Hive can give tremendous speed boost by switching to a columnar compressed format, like ORC or Parquet. We're talking about potential x30-x40 times improvements in queries performance. With latest Hive you can leverage streaming data ingest on ORC files.
You can leave things as you planned (HBase + Hive) and just rely on brute force 5 x (6 Core, 48GB, 7200 RPM) but you don't have to. A bit of work can get you into interactive ad-hoc query time territory, which will open up data analysis.
I need to process some big files (~2 TBs) with a small cluster (~10 servers), in order to produce a relatively small report (some GBs).
I only care about the final report, not intermediate results, and the machines have a great amount of RAM, so it would be fantastic to use it to reduce as much as possible disk access (and consequently increasing speed), ideally by storing the data blocks in volatile memory using the disk only when.
Looking at the configuration files and a previous question it seems Hadoop doesn't offer this function. Spark website talks about a memory_and_disk option, but I'd prefer to ask the company to deploy a new software based on a new language.
The only "solution" I found is to set dfs.datanode.data.dir as /dev/shm/ in hdfs-default.xml, to trick it to use volatile memory instead of the filesystem to store data, still in this case it would behave badly, I assume, when the RAM gets full and it uses the swap.
Is there a trick to make Hadoop store datablocks as much as possible on RAM and write on disk only when necessary?
Since the release of Hadoop 2.3 you can use HDFS in memory caching.
You can toy around with mapred.job.reduce.input.buffer.percent (defaults to 0, try something closer to 1.0, see for example this blog post) and also setting the value of mapred.inmem.merge.threshold to 0. Note that finding the right values is a bit of an art and requires some experimentation.
I guess that 100Mbit/s network interface will be bottle neck for HDFS and slow down HBase on top of it (max compactions speed about 10MB/s, etc.). Would this deployment make sense?
I am thinking that "now" when when SSD comes in to game even 1Gbit/s network interfeces still can be bottleneck, so maybe building a cluster with 100Mbit/s should never be taken into account (even for HDD)?
To keep it short:
You should never use a SSD in HDFS, these flash memorys have a limited number of writes. HDFS has many writes, that's mainly because of the replication. If you are using HBase as a NoSQL DB this will result in even more writes.
The bottlenecks are as you said the harddisk and the network. Network is an even higher bottleneck because you are distributing the data, so it has to be replicated and if you are running jobs, they could be copied if the data is not locally available (Reducers have to copy much stuff).
So you should definitely for a better network than 10Mbit or 100Mbit. That implies your switch and the NICs on the nodes.
A hdd raid will not result in a higher bandwidth in writing, there were several benchmarks that proof that. Have a look at the HDFS Wiki, it must be described there.
100MB network is not likely to be a good setup for an hadoop cluster you can see cisco's presentation from Hadoop World for some analysis of network usage. That said depending on your actual load and cluster size it might be workable - though you might want to make sure you actually need Hadoop if that is the case.
regarding SSDs they cost more per MB and depending on your write load you may have to replace them sooner than HDDs but they will save you electricity - I guess it wouldn't be cost effective to use them in a large cluster (I don't know of anyone who did)
You can use SSDs for some of the disks e.g. for the temporary space on the cluster (such as map/reduce intermediate results) to get the IO benefits
Whether or not your network will be the bottleneck depends on the kinds of jobs you are running. If you do text processing (e.g. running Stanford NER or coreference suite), then a 100Mbit/s network will be the least of your concerns. However, if you are doing a lot of I/O intensive processing (most jobs with big reduce steps), then it will be. As always, it depends on your workload. But, I think it is safe to say that a 100Mb network is the most likely culprit for a bottleneck given recent processors and nodes with several disks.
Have any of you tried Hadoop? Can it be used without the distributed filesystem that goes with it, in a Share-nothing architecture? Would that make sense?
I'm also interested into any performance results you have...
Yes, you can use Hadoop on a local filesystem by using file URIs instead of hdfs URIs in various places. I think a lot of the examples that come with Hadoop do this.
This is probably fine if you just want to learn how Hadoop works and the basic map-reduce paradigm, but you will need multiple machines and a distributed filesystem to get the real benefits of the scalability inherent in the architecture.
Hadoop MapReduce can run ontop of any number of file systems or even more abstract data sources such as databases. In fact there are a couple of built-in classes for non-HDFS filesystem support, such as S3 and FTP. You could easily build your own input format as well by extending the basic InputFormat class.
Using HDFS brings certain advantages, however. The most potent advantage is that the MapReduce job scheduler will attempt to execute maps and reduces on the physical machines that are storing the records in need of processing. This brings a performance boost as data can be loaded straight from the local disk instead of transferred over the network, which depending on the connection may be orders of magnitude slower.
As Joe said, you can indeed use Hadoop without HDFS. However, throughput depends on the cluster's ability to do computation near where data is stored. Using HDFS has 2 main benefits IMHO 1) computation is spread more evenly across the cluster (reducing the amount of inter-node communication) and 2) the cluster as a whole is more resistant to failure due to data unavailability.
If your data is already partitioned or trivially partitionable, you may want to look into supplying your own partitioning function for your map-reduce task.
The best way to wrap your head around Hadoop is to download it and start exploring the include examples. Use a Linux box/VM and your setup will be much easier than Mac or Windows. Once you feel comfortable with the samples and concepts, then start to see how your problem space might map into the framework.
A couple resources you might find useful for more info on Hadoop:
Hadoop Summit Videos and Presentations
Hadoop: The Definitive Guide: Rough Cuts Version - This is one of the few (only?) books available on Hadoop at this point. I'd say it's worth the price of the electronic download option even at this point ( the book is ~40% complete ).
Parallel/ Distributed computing = SPEED << Hadoop makes this really really easy and cheap since you can just use a bunch of commodity machines!!!
Over the years disk storage capacities have increased massively but the speeds at which you read the data have not kept up. The more data you have on one disk, the slower the seeks.
Hadoop is a clever variant of the divide an conquer approach to problem solving.
You essentially break the problem into smaller chunks and assign the chunks to several different computers to perform processing in parallel to speed things up rather than overloading one machine. Each machine processes its own subset of data and the result is combined in the end. Hadoop on a single node isn't going to give you the speed that matters.
To see the benefit of hadoop, you should have a cluster with at least 4 - 8 commodity machines (depending on the size of your data) on a the same rack.
You no longer need to be a super genius parallel systems engineer to take advantage of distributed computing. Just know hadoop with Hive and your good to go.
yes, hadoop can be very well used without HDFS. HDFS is just a default storage for Hadoop. You can replace HDFS with any other storage like databases. HadoopDB is an augmentation over hadoop that uses Databases instead of HDFS as a data source. Google it, you will get it easily.
If you're just getting your feet wet, start out by downloading CDH4 & running it. You can easily install into a local Virtual Machine and run in "pseudo-distributed mode" which closely mimics how it would run in a real cluster.
Yes You can Use local file system using file:// while specifying the input file etc and this would work also with small data sets.But the actual power of hadoop is based on distributed and sharing mechanism. But Hadoop is used for processing huge amount of data.That amount of data cannot be processed by a single local machine or even if it does it will take lot of time to finish the job.Since your input file is on a shared location(HDFS) multiple mappers can read it simultaneously and reduces the time to finish the job. In nutshell You can use it with local file system but to meet the business requirement you should use it with shared file system.
Great theoretical answers above.
To change your hadoop file system to local, you can change it in "core-site.xml" configuration file like below for hadoop versions 2.x.x.
<property>
<name>fs.defaultFS</name>
<value>file:///</value>
</property>
for hadoop versions 1.x.x.
<property>
<name>fs.default.name</name>
<value>file:///</value>
</property>