Kill a process generated by for loop after certain time - bash

I have some code that tends to hang randomly inside it's 'for loop'. I'm looking for a solution that will automatically kill the ssh session's PID if it exists for 5 seconds. I'm killing the hung processes right now manually, but I want to put this in cron so automatic PID killing would be awesome.
for host in `cat $WORKDIR/linux_hosts.txt $WORKDIR/aix_hosts.txt`
do
ssh -o LogLevel=QUIET -o ConnectTimeout=2 -t $host "cat /etc/passwd" >> $FILEDIR/$host
done
Thanks for the help!

Run all the ssh processes in the background, then wait 5 seconds. Once sleep returns, use jobs -p to get the process IDs of any background jobs still running, and kill them.
cat "$WORKDIR"/{linux_hosts.txt,aix_hosts.txt} | while read host; do
ssh -o LogLevel=QUIET -o ConnectTimeout=2 -t "$host" "cat /etc/passwd" >> "$FILEDIR/$host" &
done
sleep 5
kill $(jobs -p) 2>/dev/null

Use timeout:
for host in `cat $WORKDIR/linux_hosts.txt $WORKDIR/aix_hosts.txt`
do
timeout 5s ssh -o LogLevel=QUIET -o ConnectTimeout=2 -t $host \
"cat /etc/passwd" >> $FILEDIR/$host
done

This will find and kill all ssh process older than 5 minutes.
cd /proc
kill $(find $(pidof ssh) -maxdepth 0 -mmin +5)

Related

Mac Terminal Open Command - Save PID of Opened Application?

I'd like to open an xcode workspace in terminal, wait some time, then close that workspace (xcode has some hidden magic it does on projects that makes this necessary in an automated build process).
So something like-
pid=`open proj.xcworkspace`
sleep 30
kill $pid
Because multiple xcode projects may be running in the same time. I can't simply kill xcode, just the process I started.
How can I get the PID of an application I open in terminal?
You can catch the current Process ID with $$.
Or you can search for Process IDs with ps -C PROGRAMM_NAME -o pid=.
suleiman#antec:~$ ps -C icedove -o pid=
887
suleiman#antec:~$ ps -C vlc -o pid=
29405
Addition...
Here is a working example of what I mean ...
#!/bin/bash
i=0
while [ "$i" -le 10 ]
do
example.sh &
Pid[$i]=$(ps -C "example.sh" -o "pid=")
Pid[$i]=$(echo "${Pid[$i]}" | tail -n 1)
#echo "${Pid[$i]}"
i=$(($i +1))
done
for PID in "${Pid[#]}"
do
kill "$PID"
done
exit 0

ssh timeout in shell script workaround

I have a script that loops through a list of hosts
/usr/local/bin/ssh -q -o "StrictHostKeyChecking=no" -o "BatchMode=yes" -n ${host} "/usr/bin/uptime" > /dev/null 2>&1
if [ $? -ne 0 ]
then
echo ${host}:FAILED
fi
fi
done
The problem is that when it comes across a host that is offline it hangs for some time.
I am running SSH Tectia Server 4.4.12 on i686-pc-linux-gnu
And the ConnectTimeout option is not available.
Any ideas for a workaround?
Thanks
Perform a task for a given length of time by using the & operator, backgrounding the process and killing its PID.:
/usr/local/bin/ssh -q -o "StrictHostKeyChecking=no" -o "BatchMode=yes" -n ${host} "/usr/bin/uptime" & PID="$!"
# Allow 5 seconds to elapse before killing the command
sleep 5
kill "$PID"

How to stop a running script which calls a infinite loop

I'm writing a bash script for kicking up an uncertain program. The run time of the program is unknown. The script will also kick up a while loop for using linux commands or perf to record something in a 1 second manner.
./my_app &
$i=1
while true;
do
perf stat -a -A -e writeback:writeback_dirty_page sleep $i >> out
done
How can I stop the while loop while my_app is finished? Thank you.
Make your while loop conditional on the process id of the app existing:
./my_app &
app_pid=$!
i=1
while ps -p $app_pid >/dev/null 2>&1
do
perf stat -a -A -e writeback:writeback_dirty_page sleep $i >> out
done
Get the pid using
echo $!
then
kill
you can send kill signal from my_app to the process that spawn my_app
Here is the real example
test.sh
#!/bin/bash
./my_app.sh $$ &
while [ 1 ]
do
echo running....
sleep 2
done
my_app.sh
#!/bin/bash
sleep 10
kill -9 $1

Letting other users stop/restart simple bash daemons – use signals or what?

I have a web server where I run some slow-starting programs as daemons. These sometimes need quick restarting (or stopping) when I recompile them or switch to another installation of them.
Inspired by http://mywiki.wooledge.org/ProcessManagement, I'm writing a script
called daemonise.sh that looks like
#!/bin/sh
while :; do
./myprogram lotsadata.xml
echo "Restarting server..." 1>&2
done
to keep a "daemon" running. Since I sometimes need to stop it, or just
restart it, I run that script in a screen session, like:
$ ./daemonise.sh & DPID=$!
$ screen -d
Then perhaps I recompile myprogram, install it to a new path, start
the new one up and want to kill the old one:
$ screen -r
$ kill $DPID
$ screen -d
This works fine when I'm the only maintainer, but now I want to let
someone else stop/restart the program, no matter who started it. And
to make things more complicated, the daemonise.sh script in fact
starts about 16 programs, making it a hassle to kill every single one
if you don't know their PIDs.
What would be the "best practices" way of letting another user
stop/restart the daemons?
I thought about shared screen sessions, but that just sounds hacky and
insecure. The best solution I've come up with for now is to wrap
starting and killing in a script that catches certain signals:
#!/bin/bash
DPID=
trap './daemonise.sh & DPID=$!' USR1
trap 'kill $DPID' USR2 EXIT
# Ensure trapper wrapper doesn't exit:
while :; do
sleep 10000 & wait $!
done
Now, should another user need to stop the daemons and I can't do it,
she just has to know the pid of the wrapper, and e.g. sudo kill -s
USR2 $wrapperpid. (Also, this makes it possible to run the daemons
on reboots, and still kill them cleanly.)
Is there a better solution? Are there obvious problems with this
solution that I'm not seeing?
(After reading Greg's Bash Wiki, I'd like to avoid any solution involving pgrep or PID-files …)
I recommend a PID based init script. Anyone with sudo privileged to the script will be able to start and stop the server processes.
On improving your approach: wouldn't it be advisable to make sure that your sleep command in sleep 10000 & wait $! gets properly terminated if your pidwrapper script exits somehow?
Otherwise there would remain a dangling sleep process in the process table for quite some time.
Similarly, wouldn't it be cleaner to terminate myprogram in daemonise.sh properly on restart (i. e. if daemonise.sh receives a TERM signal)?
In addition, it is possible to suppress job notification messages and test for pid existence before killing.
#!/bin/sh
# cat daemonise.sh
# cf. "How to suppress Terminated message after killing in bash?",
# http://stackoverflow.com/q/81520
trap '
echo "server shut down..." 1>&2
kill $spid1 $spid2 $spid3 &&
wait $spid1 $spid2 $spid3 2>/dev/null
exit
' TERM
while :; do
echo "Starting server..." 1>&2
#./myprogram lotsadata.xml
sleep 100 &
spid1=${!}
sleep 100 &
spid2=${!}
sleep 100 &
spid3=${!}
wait
echo "Restarting server..." 1>&2
done
#------------------------------------------------------------
#!/bin/bash
# cat pidwrapper
DPID=
trap '
kill -0 ${!} 2>/dev/null && kill ${!} && wait ${!} 2>/dev/null
./daemonise.sh & DPID=${!}
' USR1
trap '
kill -0 ${!} 2>/dev/null && kill ${!} && wait ${!} 2>/dev/null
kill -0 $DPID 2>/dev/null && kill $DPID && wait ${DPID} 2>/dev/null
' USR2
trap '
trap - EXIT
kill -0 $DPID 2>/dev/null && kill $DPID && wait ${DPID} 2>/dev/null
kill -0 ${!} 2>/dev/null && kill ${!} && wait ${!} 2>/dev/null
exit 0
' EXIT
# Ensure trapper wrapper does not exit:
while :; do
sleep 10000 & wait $!
done
#------------------------------------------------------------
# test
{
wrapperpid="`exec sh -c './pidwrapper & echo ${!}' | head -1`"
echo "wrapperpid: $wrapperpid"
for n in 1 2 3 4 5; do
sleep 2
# start daemonise.sh
kill -s USR1 $wrapperpid
sleep 2
# kill daemonise.sh
kill -s USR2 $wrapperpid
done
sleep 2
echo kill $wrapperpid
kill $wrapperpid
}

Wait for a process to finish

Is there any builtin feature in Bash to wait for a process to finish?
The wait command only allows one to wait for child processes to finish.
I would like to know if there is any way to wait for any process to finish before proceeding in any script.
A mechanical way to do this is as follows but I would like to know if there is any builtin feature in Bash.
while ps -p `cat $PID_FILE` > /dev/null; do sleep 1; done
To wait for any process to finish
Linux (doesn't work on Alpine, where ash doesn't support tail --pid):
tail --pid=$pid -f /dev/null
Darwin (requires that $pid has open files):
lsof -p $pid +r 1 &>/dev/null
With timeout (seconds)
Linux:
timeout $timeout tail --pid=$pid -f /dev/null
Darwin (requires that $pid has open files):
lsof -p $pid +r 1m%s -t | grep -qm1 $(date -v+${timeout}S +%s 2>/dev/null || echo INF)
There's no builtin. Use kill -0 in a loop for a workable solution:
anywait(){
for pid in "$#"; do
while kill -0 "$pid"; do
sleep 0.5
done
done
}
Or as a simpler oneliner for easy one time usage:
while kill -0 PIDS 2> /dev/null; do sleep 1; done;
As noted by several commentators, if you want to wait for processes that you do not have the privilege to send signals to, you have find some other way to detect if the process is running to replace the kill -0 $pid call. On Linux, test -d "/proc/$pid" works, on other systems you might have to use pgrep (if available) or something like ps | grep "^$pid ".
I found "kill -0" does not work if the process is owned by root (or other), so I used pgrep and came up with:
while pgrep -u root process_name > /dev/null; do sleep 1; done
This would have the disadvantage of probably matching zombie processes.
This bash script loop ends if the process does not exist, or it's a zombie.
PID=<pid to watch>
while s=`ps -p $PID -o s=` && [[ "$s" && "$s" != 'Z' ]]; do
sleep 1
done
EDIT: The above script was given below by Rockallite. Thanks!
My orignal answer below works for Linux, relying on procfs i.e. /proc/. I don't know its portability:
while [[ ( -d /proc/$PID ) && ( -z `grep zombie /proc/$PID/status` ) ]]; do
sleep 1
done
It's not limited to shell, but OS's themselves do not have system calls to watch non-child process termination.
FreeBSD and Solaris have this handy pwait(1) utility, which does exactly, what you want.
I believe, other modern OSes also have the necessary system calls too (MacOS, for example, implements BSD's kqueue), but not all make it available from command-line.
From the bash manpage
wait [n ...]
Wait for each specified process and return its termination status
Each n may be a process ID or a job specification; if a
job spec is given, all processes in that job's pipeline are
waited for. If n is not given, all currently active child processes
are waited for, and the return status is zero. If n
specifies a non-existent process or job, the return status is
127. Otherwise, the return status is the exit status of the
last process or job waited for.
Okay, so it seems the answer is -- no, there is no built in tool.
After setting /proc/sys/kernel/yama/ptrace_scope to 0, it is possible to use the strace program. Further switches can be used to make it silent, so that it really waits passively:
strace -qqe '' -p <PID>
All these solutions are tested in Ubuntu 14.04:
Solution 1 (by using ps command):
Just to add up to Pierz answer, I would suggest:
while ps axg | grep -vw grep | grep -w process_name > /dev/null; do sleep 1; done
In this case, grep -vw grep ensures that grep matches only process_name and not grep itself. It has the advantage of supporting the cases where the process_name is not at the end of a line at ps axg.
Solution 2 (by using top command and process name):
while [[ $(awk '$12=="process_name" {print $0}' <(top -n 1 -b)) ]]; do sleep 1; done
Replace process_name with the process name that appears in top -n 1 -b. Please keep the quotation marks.
To see the list of processes that you wait for them to be finished, you can run:
while : ; do p=$(awk '$12=="process_name" {print $0}' <(top -n 1 -b)); [[ $b ]] || break; echo $p; sleep 1; done
Solution 3 (by using top command and process ID):
while [[ $(awk '$1=="process_id" {print $0}' <(top -n 1 -b)) ]]; do sleep 1; done
Replace process_id with the process ID of your program.
Blocking solution
Use the wait in a loop, for waiting for terminate all processes:
function anywait()
{
for pid in "$#"
do
wait $pid
echo "Process $pid terminated"
done
echo 'All processes terminated'
}
This function will exits immediately, when all processes was terminated. This is the most efficient solution.
Non-blocking solution
Use the kill -0 in a loop, for waiting for terminate all processes + do anything between checks:
function anywait_w_status()
{
for pid in "$#"
do
while kill -0 "$pid"
do
echo "Process $pid still running..."
sleep 1
done
done
echo 'All processes terminated'
}
The reaction time decreased to sleep time, because have to prevent high CPU usage.
A realistic usage:
Waiting for terminate all processes + inform user about all running PIDs.
function anywait_w_status2()
{
while true
do
alive_pids=()
for pid in "$#"
do
kill -0 "$pid" 2>/dev/null \
&& alive_pids+="$pid "
done
if [ ${#alive_pids[#]} -eq 0 ]
then
break
fi
echo "Process(es) still running... ${alive_pids[#]}"
sleep 1
done
echo 'All processes terminated'
}
Notes
These functions getting PIDs via arguments by $# as BASH array.
Had the same issue, I solved the issue killing the process and then waiting for each process to finish using the PROC filesystem:
while [ -e /proc/${pid} ]; do sleep 0.1; done
There is no builtin feature to wait for any process to finish.
You could send kill -0 to any PID found, so you don't get puzzled by zombies and stuff that will still be visible in ps (while still retrieving the PID list using ps).
If you need to both kill a process and wait for it finish, this can be achieved with killall(1) (based on process names), and start-stop-daemon(8) (based on a pidfile).
To kill all processes matching someproc and wait for them to die:
killall someproc --wait # wait forever until matching processes die
timeout 10s killall someproc --wait # timeout after 10 seconds
(Unfortunately, there's no direct equivalent of --wait with kill for a specific pid).
To kill a process based on a pidfile /var/run/someproc.pid using signal SIGINT, while waiting for it to finish, with SIGKILL being sent after 20 seconds of timeout, use:
start-stop-daemon --stop --signal INT --retry 20 --pidfile /var/run/someproc.pid
Use inotifywait to monitor some file that gets closed, when your process terminates. Example (on Linux):
yourproc >logfile.log & disown
inotifywait -q -e close logfile.log
-e specifies the event to wait for, -q means minimal output only on termination. In this case it will be:
logfile.log CLOSE_WRITE,CLOSE
A single wait command can be used to wait for multiple processes:
yourproc1 >logfile1.log & disown
yourproc2 >logfile2.log & disown
yourproc3 >logfile3.log & disown
inotifywait -q -e close logfile1.log logfile2.log logfile3.log
The output string of inotifywait will tell you, which process terminated. This only works with 'real' files, not with something in /proc/
Rauno Palosaari's solution for Timeout in Seconds Darwin, is an excellent workaround for a UNIX-like OS that does not have GNU tail (it is not specific to Darwin). But, depending on the age of the UNIX-like operating system, the command-line offered is more complex than necessary, and can fail:
lsof -p $pid +r 1m%s -t | grep -qm1 $(date -v+${timeout}S +%s 2>/dev/null || echo INF)
On at least one old UNIX, the lsof argument +r 1m%s fails (even for a superuser):
lsof: can't read kernel name list.
The m%s is an output format specification. A simpler post-processor does not require it. For example, the following command waits on PID 5959 for up to five seconds:
lsof -p 5959 +r 1 | awk '/^=/ { if (T++ >= 5) { exit 1 } }'
In this example, if PID 5959 exits of its own accord before the five seconds elapses, ${?} is 0. If not ${?} returns 1 after five seconds.
It may be worth expressly noting that in +r 1, the 1 is the poll interval (in seconds), so it may be changed to suit the situation.
On a system like OSX you might not have pgrep so you can try this appraoch, when looking for processes by name:
while ps axg | grep process_name$ > /dev/null; do sleep 1; done
The $ symbol at the end of the process name ensures that grep matches only process_name to the end of line in the ps output and not itself.

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