My system is Red Hat Enterprise Linux Server release 5.7 (Tikanga).
I am trying to run the configure script , and I am getting the following error:
checking for the toolset name used by Boost for g++... gcc41 -gcc
configure: Detected BOOST_ROOT; continuing with --with-boost=/raid/users/andrey/3rdParty/boost_1_47/
checking for Boost headers version >= 1.39.0... /users/andrey/3rdParty/boost_1_47/
checking for Boost's header version... 1_47
checking boost/program_options.hpp usability... no
checking boost/program_options.hpp presence... no
checking for boost/program_options.hpp... no
configure: error: cannot find boost/program_options.hpp
The documentation of configure says that boost is an optional package. So I tried to build it without boost:
configure -with-boost=no
This does not run as well and returns the following error:
checking for assert... no
checking for the toolset name used by Boost for g++... gcc41 -gcc
configure: Detected BOOST_ROOT=/users/andrey/3rdParty/boost_1_47/, but overridden by --with-boost=no
checking for Boost headers version >= 1.39.0... no
I've seen this question already, but it does not seem to help me.
Any idea?
in debian/ubuntu/mint you can use :
apt-get install libboost-all-dev
I have met the same issue when building the gearmand from source. The issue was fixed after I installed the package boost-devel, which will place needed headers into /usr/include/boost. Thanks and hope this may help.
Step "Installing Cygwin Package Dependencies needed for Gearman".
In addition to these packages:
gcc
gcc-c++
gcc-g++
make
libuuid1-devel
libiconv
if you did this you can:
reinstall cygwin and install this :
libuuid
boost
You can use following command to solve this issue.
yum install boost*
If you are using centos or fedora or redhat then above command will work.
Related
i am sitting since yesterday at the problem ruby to install on my redhat 7 system. I already have gcc cc and g++ installed. Also several restarts have not helped I always get the following errors :
[root#ld01 bin]# rbenv install 2.6.1
Downloading ruby-2.6.1.tar.bz2...
-> https://cache.ruby-lang.org/pub/ruby/2.6/ruby-2.6.1.tar.bz2
Installing ruby-2.6.1...
BUILD FAILED (Red Hat Enterprise Linux Server 7.6 using ruby-build 20190130-4-g0e33b11)
Inspect or clean up the working tree at /tmp/ruby-build.20190227084942.17275
Results logged to /tmp/ruby-build.20190227084942.17275.log
Last 10 log lines:
/tmp/ruby-build.20190227084942.17275 /usr/bin
/tmp/ruby-build.20190227084942.17275/ruby-2.6.1 /tmp/ruby-build.20190227084942.17275 /usr/bin
checking for ruby... false
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking whether the C compiler works... no
configure: error: in `/tmp/ruby-build.20190227084942.17275/ruby-2.6.1':
configure: error: C compiler cannot create executables
See `config.log' for more details
I think you'll need the config.log but where exactly can I find the log file ?
I'm guessing you've downloaded Ruby and are trying to install it over an existing version - if so, this can break things. If Ruby 2.5 will suffice, I suggest using the version available in RHEL as a Software Collection. Installation info is here.
Software Collections alongside the original Ruby version (used by the OS) so that nothing breaks.
I have managed to successfully launch the most recent RStudio AWS EC2 instance (louisaslett.com, RStudio-1.1383_R-3.4.2…ubuntu-16.04-LTS-64). R operates mostly as expected in this instance, and I can install and open a number of packages. However I get an error if I try to install either of the rgdal of gdalUtils packages.
Below is the console output when I attempt to install rgdal. The output for the gdalUtils install is too long to include here, but both include the text "error: upgrade GDAL to 1.11.4 or later" which I suspect is the problem, but have no idea how to correct.
Any thoughts or advice would be greatly appreciated.
Cheers
> install.packages("rgdal")
Installing package into ‘/home/rstudio/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/rgdal_1.3-3.tar.gz'
Content type 'application/x-gzip' length 1670656 bytes (1.6 MB)
==================================================
downloaded 1.6 MB
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgdal: 1.3-3
checking for /usr/bin/svnversion... yes
configure: svn revision: 759
checking whether g++ supports C++11 features by default... no
checking whether g++ supports C++11 features with -std=gnu++11... yes
configure: C++11 support available
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 1.11.3
checking GDAL version >= 1.11.4... no
configure: error: upgrade GDAL to 1.11.4 or later
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/rstudio/R/x86_64-pc-linux-gnu-library/3.4/rgdal’
Warning in install.packages :
installation of package ‘rgdal’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpGUxbcA/downloaded_packages’
I have since run into the same issue running Rstudio on the google cloud. In both cases a solution was relatively simple - install a recent but older rgdal package from cran (https://cran.r-project.org/src/contrib/Archive/rgdal/) which wasnt dependent on the most recent gdal libraries, and therefore installed without throwing the error about upgrading GDAL.
I am trying to install glibc-2.12.2 because Haskell-stack specifically needs 2.12 version.
ldd --version
ldd (GNU libc) 2.26
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Written by Roland McGrath and Ulrich Drepper.
The error is -
rajkumar#localhost:~/Downloads/glibc-2.12.2/build-tree> ../configure
configure: loading site script /usr/share/site/x86_64-unknown-linux-gnu
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld... /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld
checking version of /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld... 2.29.0.20170830, ok
checking for pwd... /usr/bin/pwd
checking for gcc... gcc
checking version of gcc... 7.2.1, bad
checking for gnumake... no
checking for gmake... gmake
checking version of gmake... 4.2.1, bad
checking for gnumsgfmt... no
checking for gmsgfmt... no
checking for msgfmt... msgfmt
checking version of msgfmt... 0.19.8.1, ok
checking for makeinfo... no
checking for sed... sed
checking version of sed... v. ?.??, bad
checking for autoconf... no
configure: error:
*** These critical programs are missing or too old: gcc make
*** Check the INSTALL file for required versions.
But I have gcc and make already installed.
rajkumar#localhost:~/Downloads/glibc-2.12.2/build-tree> sudo zypper install make
Loading repository data...
Reading installed packages...
'make' is already installed.
No update candidate for 'make-4.2.1-2.1.x86_64'. The highest available version is already installed.
Resolving package dependencies...
Nothing to do.
rajkumar#localhost:~/Downloads/glibc-2.12.2/build-tree> sudo zypper install gcc
Loading repository data...
Reading installed packages...
'gcc' is already installed.
No update candidate for 'gcc-7-2.4.x86_64'. The highest available version is already installed.
Resolving package dependencies...
Nothing to do.
I already have glibc 2.26 installed. How can I downgrade the version to 2.12 on opensuse.
I had the same issue and solved it following Mark Plotnick's suggestion in this post:
This may work: edit the configure file, look for 3.79* | 3.[89]*, change it to 3.79* | 3.[89]* | 4.*
The problem is that the .configure file is using an incomplete regular expression when verifying make's version. Adding the | 4.* makes sure it picks your (newer) installed version.
I am trying to install glibc-2.12.2 because Haskell-stack specifically needs 2.12 version.
This is exceedingly unlikely to be true: GLIBC is backwards-compatible (older programs continue to work on newer GLIBC versions).
I already have glibc 2.26 installed. How can I downgrade the version to 2.12 on opensuse.
If you succeed, you will render your system unbootable. You really don't want to do this.
Instead you should describe your actual problem.
P.S. Your gcc is certainly not too old. Rather, your GLIBC-2.12 configure is too old to understand that such a new gcc is new enough.
I am installing fastcgi++ from http://www.nongnu.org/fastcgipp/
It required the boost libraries and I configure using the following
sudo ./configure --with-boost=/home/test/boost
But I get the below error. How do I fix? Its finding my boost. Hmmmm
checking for Boost's header version... 1_48
checking boost/bind.hpp usability... yes
checking boost/bind.hpp presence... yes
checking for boost/bind.hpp... yes
checking for the toolset name used by Boost for g++... gcc45 -gcc
checking boost/date_time/posix_time/posix_time.hpp usability... yes
checking boost/date_time/posix_time/posix_time.hpp presence... yes
checking for boost/date_time/posix_time/posix_time.hpp... yes
checking for the Boost date_time library... no
configure: error: cannot find the flags to link with Boost date_time
run
sudo apt-get install libboost-date-time1.40-dev
probably you'll also need other like libboost-system, find then with
apt-cache search libboost
I ran the following command, but I got the same error
sudo apt-get install libboost-dev libboost-date-time-dev
There were a lot of packages missing in my boost installation. My configure error was solved when I executed
sudo apt-get install libboost-all-dev
which installed all boost libraries. Be aware that it will install the most recent boost libraries in your repositories. In my case, it installed 1.46 version, while the current version in the boost website is 1.51.
There was a problem with the fastcgi++ configure script when using boost libraries > 1.49. Here's the bug ticket.
This has been fixed, so download fastcgi++ 2.1 or later. An alternative workaround is to use older versions of boost (as mentioned in the other answers).
What a pain,
My boost binary that came with my distribution repository does not included following dependencies too.
#libboost-syste-dev
#libboost-date-time-dev
#libboost-iostreams-dev
If you having the same trouble , I think it's better to download whole the boost source and compile it manually, rather than installing a missing dependency and running again ./configure to find out what would miss next.
NOTE: as mentioned in an earlier
#apt-get install libboost-all-dev
would make it work. But I didn't tested it yet.
I'm trying to install rpostgresql on a mac. I want to be able to connect to a server using an IP address and read the data into a dataframe. I downloaded the package from CRAN, and ran the following line:
install.packages('/Users/celenius/Downloads/RPostgreSQL_0.2-1.tar.gz', type='source')
This started to compile the package but resulted with the following error message:
> install.packages('/Users/celenius/Downloads/RPostgreSQL_0.2-1.tar.gz', type='source')
Installing package(s) into ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
(as ‘lib’ is unspecified)
inferring 'repos = NULL' from the file name
* installing *source* package ‘RPostgreSQL’ ...
** package ‘RPostgreSQL’ successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for pg_config... /usr/bin/pg_config
checking for "/usr/include/libpq-fe.h"... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/include -I/usr/local/include -fPIC -g -O2 -c RS-DBI.c -o RS-DBI.o
make: gcc-4.2: No such file or directory
make: *** [RS-DBI.o] Error 1
ERROR: compilation failed for package ‘RPostgreSQL’
* removing ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/RPostgreSQL’
Warning in install.packages :
installation of package ‘/Users/celenius/Downloads/RPostgreSQL_0.2-1.tar.gz’ had non-zero exit status
I've looked through advice on the rpostgresql webpage (1, 2) but a lot of the suggestions are more than a year old so I thought there might be more recent advice on how to install this package.
If you want to connect to a postgre db, you also can use RODBC. Just install an ODBC driver (Lion should already include that for postgres) and you are ready to go.
I do that for conecting to my local postgre / postgis server and it works just fine.
You need Xcode installed in order to compile. Go into the Mac app store and search for, then install Xcode. It's free.
you can tell whether you already have gcc by doing a quick which gcc-4.2. My guess is that you do not. After installing Xcode, you should get /usr/bin/gcc-4.2 in response.
****EDIT****
After the comments about how you installed Xcode and still don't have gcc-4.2, I did a little bit of reading and it looks like you need to do one of the options listed in this Stack Overflow question: Setting GCC 4.2 as the default compiler on Mac OS X Leopard
This makes me wonder where my gcc-4.2 came from. Probably some fortuitous accident when I first got my MBP.
Since postgresql is required to build the package from source, you will need to install it. The easiest way to do so, if you use homebrew, is to simply do the following in a Terminal:
## install postgresql
brew install postgresql
## install the R package
Rscript -e "install.packages('RPostgreSQL', type = 'source')"
## remove postgresql (optional)
brew remove postgresql