Number of minimum vertex covers in a tree - algorithm

There are [at least] three algorithms which find minimum vertex cover in a tree in linear (O(n)) time. What I'm interested in is a modification of all of these algorithms so that I'll also get number of these minimum vertex covers.
For example for tree P4 (path with 4 nodes) the number of MVC's is 3 because we can choose nodes: 1 and 3, 2 and 4 or 2 and 3.
Of course you can describe the solution for any of the free algorithms - not all 3. I'm just interested in all of them, but if you have anything to add, don't hesitate.
I'll describe the algorithms that I know to make it easier for you.
1. Greedy algorithm.
We can notice that for every edge we have to include one of the nodes. Which one to choose? Assume we have an edge with "normal" node and a leaf. Which node is better to choose? Not the leaf of course, as the other node might help us with one more edge. The algorithm is as follows:
Start from any node which is not a leaf.
For each child make a DFS call and when it returns check if either parent or child are marked as node in vertex cover. If not you have to choose one of them so choose the parent (and mark it).
For a leaf do nothing.
Here's the code: https://ideone.com/mV4bqg.
#include<stdio.h>
#include<vector>
using namespace std;
vector<int> graph[100019];
int mvc[100019];
int mvc_tree(int v)
{
mvc[v] = -1;
if(graph[v].size() == 1)
return 0;
int x = 0;
for(int i = 0; i < graph[v].size(); ++i)
if(!mvc[graph[v][i]])
{
x += mvc_tree(graph[v][i]);
if(mvc[v] < 1 && mvc[graph[v][i]] < 1)
++x,
mvc[v] = 1;
}
return x;
}
int main()
{
int t, n, a, b, i;
scanf("%d", &t);
while(t--)
{
scanf("%d", &n);
for(i = 1; i <= n; ++i)
graph[i].clear();
for(i = 1; i < n; ++i)
{
scanf("%d%d", &a, &b);
graph[a].push_back(b);
graph[b].push_back(a);
mvc[i] = 0;
}
mvc[n] = 0;
if(n < 3)
{
puts("1");
continue;
}
for(i = 1; i <= n; ++i)
if(graph[i].size() > 1)
break;
printf("%d\n", mvc_tree(i));
}
return 0;
}
2. Dynamic programming algorithm.
We can also use recursion to solve the task.
MVC(v) = min(
1 + sum(MVC(child) for child in v.children),
v.children.size + sum(MVC(grandchild) for grandchild in v.grandchildren)
)
When we are at node v it can either be in MVC or not. If it is, we add it to our result 1 (because we include v) and subresults for subtrees for all v's children. If, on the other hand, it's not in MVC, then all his children have to be in MVC, so we add to the result number of children and for each of the children we add subresult's of their children (so v's grandchildren).
The algorithm is linear, because we check each node 2 times - for their parent and grandparent.
3. Dynamic programming no 2.
Instead of 2 states for node v (1 - in MVC, 2 - not in MVC) we can make 3 adding "maybe in MVC". How does that help? First, we call MVC(v = random node, "maybe") as we don't know whether v should be in MVC or not. The result for "maybe" is minimum of results from "yes" and "no". The result for "yes" is 1+sum(MVC(child, "maybe") for child in v.children). And the result for "no" is sum(MVC(child, "yes") for child in v.children). I think it's pretty clear why. If not, ask in comments.
The formula is therefore:
MVC(v, "maybe") = min(MVC(v, "yes"), MVC(v, "no"))
MVC(v, "yes") = 1 + sum(MVC(child, "maybe") for child in v.children)
MVC(v, "no") = sum(MVC(child, "yes") for child in v.children)
The complexity is also O(n) because every node is checked twice - with "yes" and with "no".

Dynamic programming solution
This solution expands on your third algorithm "dynamic programming no 2": We recursively define six functions
cover_maybe(v) := min(cover_no(v), cover_yes(v))
cover_no (v) := sum(cover_yes (child) for child in v.children)
cover_yes (v) := sum(cover_maybe(child) for child in v.children) + 1
count_maybe(v) :=
count_no (v) if cover_no(v) < cover_yes(v)
count_yes(v) if cover_no(v) > cover_yes(v)
count_no (v) + count_yes(v) if cover_no(v) == cover(yes)
count_no (v) := product(count_yes (child) for child in v.children)
count_yes (v) := product(count_maybe(child) for child in v.children)
The first three functions cover_maybe, cover_no and cover_yes precisely correspond to your function MVC for the states "maybe", "no" and "yes". They count the minimum number of vertices that need to be included into a vertex cover of the sub-tree below v:
cover_maybe(v) determines the minimal vertex cover for the sub-tree below v.
cover_no(v): MVC for the sub-tree below v with the condition that v is not included in this cover.
cover_yes(v): MVC for the sub-tree below v with the condition that v is included in this cover.
Explanations:
cover_maybe(v): In any vertex cover, v is either included in the cover or not. MVC picks a solution with minimal number of included vertices: the minimum of cover_no(v) and cover_yes(v).
cover_no(v): If v is not included in the cover, then all children must be included in the cover (in order to cover the edges from v to the children). Therefore, we need to add the included vertices in cover_yes(child) for all children of v.
cover_yes(v): Because v is included in the cover, it already covers the edges from v to the children --- we not restricted whether to include a child into the cover or not and hence add cover_maybe(child) for all children of v.
The next three functions count the number of solutions for these MVC problems:
count_maybe(v) counts the number of MVC solutions for the sub-tree below v.
count_no(v) counts the number of MVC solutions with the condition that v is not included in the covers.
count_yes(v) counts the number of MVC solutions with the condition that v is contained in the covers.
Explanations:
count_maybe(v): We need to consider three separate cases: If cover_no(v) is less than cover_yes(v), then it is better always to exclude v from the cover: count_maybe(v)=count_no(v). Similarly, if cover_yes(v) is less than cover_no(v), we always include v in the cover and set count_maybe(v)=count_yes(v). But if count_no(v) is equal to count_yes(v) then we can either include or exclude v from the cover. The number of possibilities is the sum: count_maybe(v)=count_no(v)+count_yes(v).
count_no(v) and count_yes(v): Because we already know whether to include or exclude the node v into the cover, we are left with independent sub-trees for the children. The number of possible solutions is the product of solution counts for each sub-tree. The choice of the correct sub-problem (count_yes or count_maybe) is as explained above (for cover_no(v) and cover_yes(v)).
Two notes regarding the implementation:
As usual for dynamic programming, you must cache the results of each function: The first time a result is calculated and stored in a cache. When the same query is asked again, then the result is read out of the cache instead of being calculated again. Through this caching, the run time of this algorithm is O(n) because each of the six function can be computed at most once for each node.
You must start the calculation with the root of the tree (not with a random node as you suggest in your question): Even though the problem is defined with undirected --- our "divide and conquer" algorithm picks one root node and arranges the children of nodes according to their distance from this root.

Related

How to adapt Fenwick tree to answer range minimum queries

Fenwick tree is a data-structure that gives an efficient way to answer to main queries:
add an element to a particular index of an array update(index, value)
find sum of elements from 1 to N find(n)
both operations are done in O(log(n)) time and I understand the logic and implementation. It is not hard to implement a bunch of other operations like find a sum from N to M.
I wanted to understand how to adapt Fenwick tree for RMQ. It is obvious to change Fenwick tree for first two operations. But I am failing to figure out how to find minimum on the range from N to M.
After searching for solutions majority of people think that this is not possible and a small minority claims that it actually can be done (approach1, approach2).
The first approach (written in Russian, based on my google translate has 0 explanation and only two functions) relies on three arrays (initial, left and right) upon my testing was not working correctly for all possible test cases.
The second approach requires only one array and based on the claims runs in O(log^2(n)) and also has close to no explanation of why and how should it work. I have not tried to test it.
In light of controversial claims, I wanted to find out whether it is possible to augment Fenwick tree to answer update(index, value) and findMin(from, to).
If it is possible, I would be happy to hear how it works.
Yes, you can adapt Fenwick Trees (Binary Indexed Trees) to
Update value at a given index in O(log n)
Query minimum value for a range in O(log n) (amortized)
We need 2 Fenwick trees and an additional array holding the real values for nodes.
Suppose we have the following array:
index 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
value 1 0 2 1 1 3 0 4 2 5 2 2 3 1 0
We wave a magic wand and the following trees appear:
Note that in both trees each node represents the minimum value for all nodes within that subtree. For example, in BIT2 node 12 has value 0, which is the minimum value for nodes 12,13,14,15.
Queries
We can efficiently query the minimum value for any range by calculating the minimum of several subtree values and one additional real node value. For example, the minimum value for range [2,7] can be determined by taking the minimum value of BIT2_Node2 (representing nodes 2,3) and BIT1_Node7 (representing node 7), BIT1_Node6 (representing nodes 5,6) and REAL_4 - therefore covering all nodes in [2,7]. But how do we know which sub trees we want to look at?
Query(int a, int b) {
int val = infinity // always holds the known min value for our range
// Start traversing the first tree, BIT1, from the beginning of range, a
int i = a
while (parentOf(i, BIT1) <= b) {
val = min(val, BIT2[i]) // Note: traversing BIT1, yet looking up values in BIT2
i = parentOf(i, BIT1)
}
// Start traversing the second tree, BIT2, from the end of range, b
i = b
while (parentOf(i, BIT2) >= a) {
val = min(val, BIT1[i]) // Note: traversing BIT2, yet looking up values in BIT1
i = parentOf(i, BIT2)
}
val = min(val, REAL[i]) // Explained below
return val
}
It can be mathematically proven that both traversals will end in the same node. That node is a part of our range, yet it is not a part of any subtrees we have looked at. Imagine a case where the (unique) smallest value of our range is in that special node. If we didn't look it up our algorithm would give incorrect results. This is why we have to do that one lookup into the real values array.
To help understand the algorithm I suggest you simulate it with pen & paper, looking up data in the example trees above. For example, a query for range [4,14] would return the minimum of values BIT2_4 (rep. 4,5,6,7), BIT1_14 (rep. 13,14), BIT1_12 (rep. 9,10,11,12) and REAL_8, therefore covering all possible values [4,14].
Updates
Since a node represents the minimum value of itself and its children, changing a node will affect its parents, but not its children. Therefore, to update a tree we start from the node we are modifying and move up all the way to the fictional root node (0 or N+1 depending on which tree).
Suppose we are updating some node in some tree:
If new value < old value, we will always overwrite the value and move up
If new value == old value, we can stop since there will be no more changes cascading upwards
If new value > old value, things get interesting.
If the old value still exists somewhere within that subtree, we are done
If not, we have to find the new minimum value between real[node] and each tree[child_of_node], change tree[node] and move up
Pseudocode for updating node with value v in a tree:
while (node <= n+1) {
if (v > tree[node]) {
if (oldValue == tree[node]) {
v = min(v, real[node])
for-each child {
v = min(v, tree[child])
}
} else break
}
if (v == tree[node]) break
tree[node] = v
node = parentOf(node, tree)
}
Note that oldValue is the original value we replaced, whereas v may be reassigned multiple times as we move up the tree.
Binary Indexing
In my experiments Range Minimum Queries were about twice as fast as a Segment Tree implementation and updates were marginally faster. The main reason for this is using super efficient bitwise operations for moving between nodes. They are very well explained here. Segment Trees are really simple to code so think about is the performance advantage really worth it? The update method of my Fenwick RMQ is 40 lines and took a while to debug. If anyone wants my code I can put it on github. I also produced a brute and test generators to make sure everything works.
I had help understanding this subject & implementing it from the Finnish algorithm community. Source of the image is http://ioinformatics.org/oi/pdf/v9_2015_39_44.pdf, but they credit Fenwick's 1994 paper for it.
The Fenwick tree structure works for addition because addition is invertible. It doesn't work for minimum, because as soon as you have a cell that's supposed to be the minimum of two or more inputs, you've lost information potentially.
If you're willing to double your storage requirements, you can support RMQ with a segment tree that is constructed implicitly, like a binary heap. For an RMQ with n values, store the n values at locations [n, 2n) of an array. Locations [1, n) are aggregates, with the formula A(k) = min(A(2k), A(2k+1)). Location 2n is an infinite sentinel. The update routine should look something like this.
def update(n, a, i, x): # value[i] = x
i += n
a[i] = x
# update the aggregates
while i > 1:
i //= 2
a[i] = min(a[2*i], a[2*i+1])
The multiplies and divides here can be replaced by shifts for efficiency.
The RMQ pseudocode is more delicate. Here's another untested and unoptimized routine.
def rmq(n, a, i, j): # min(value[i:j])
i += n
j += n
x = inf
while i < j:
if i%2 == 0:
i //= 2
else:
x = min(x, a[i])
i = i//2 + 1
if j%2 == 0:
j //= 2
else:
x = min(x, a[j-1])
j //= 2
return x

Least distance between two values in a large binary tree with duplicate values

Given a binary tree that might contain duplicate values, you need to find minimum distance between two given values. Note that the binary tree can be large.
For example:
5
/ \
1 7
/ \ / \
4 3 8 2
/ \
1 2
The function should return 2 for (1 and 2 as input).
(If duplicates are not present, we can find LCA and then calculate the distance.)
I've written the following code but I couldn't handle cases when the values are present in different subtrees and in the below cases:
root = 1, root.left = 4, root.left.left = 3, root.left.right = 2, root.left.left.left = 1
root = 1, root.left = 4, root.left.left = 3, root.left.left.left = 1, root.left.left.right = 2
void dist(struct node* root,int& min,int n1,int n2,int pos1,int pos2,int level) {
if(!root)
return;
if(root->data==n1){
pos1 = level;
if(pos2>=0)
if(pos1-pos2 < min)
min = pos1-pos2;
}
else if(root->data==n2){
pos2 = level;
if(pos1>=0)
if(pos2-pos1 < min)
min = pos2-pos1;
}
dist(root->left,min,n1,n2,pos1,pos2,level+1);
dist(root->right,min,n1,n2,pos1,pos2,level+1);
}
I think at each node we can find if that node is the LCA of the values or not. If that node is LCA then find the distance and update min accordingly, but this would take O(n2).
Following is an algorithm to solve the problem:-
traverse all of the tree and calculate paths for each node using binary strings representation and store into hash map
eg. For your tree the hashmap will be
1 => 0,000
2 => 001,11
3 => 01
...
When query for distance between (u,v) check for each pair and calculate distance between them. Remove common prefix from strings and then sum the remaining lengths
eg. u=1 and v=2
distance(0,001) = 2
distance(0,11) = 3
distance(000,001) = 2
distance(000,11) = 5
min = 2
Note: I think the second step can be made more efficient but need to do more research
You can compute the LCA of a set of nodes by computing LCA(x1, LCA(x2, LCA(x3... and all the nodes in the set will be somewhere below this LCA. If you compare the LCAs of two sets of nodes and one is not directly beneath the other then the minimum distance between any two nodes in different sets will be at least the distance between the LCAs. If one LCA is above the other then the minimum distance could be zero.
This allows a sort of branch and bound approach. At each point you have a best minimum distance so far (initialized as infinity). Given two sets of nodes, use their LCAs to work out a lower bound on their minimum distance and discard them if this is no better than the best answer so far. If not discarded, split each set into two plus a possible single depending on whether each node in the set is to the left of the LCA, to the right of the LCA, or is the LCA. Recursively check for the minimum distance in the (up to nine) pairs of split sets. If both splits in a pair are below some minimum size, just work out the LCAs and minimum distances of each pair of nodes across the two sets - at this point may find out that you have a new best answer and can update the best answer so far.
Looking at the example at the top of the question, the LCA of the 2s is the root of the tree, and the LCA of the 1s is the highest 1. So the minimum distance between these two sets could be close to zero. Now split each set in two. The left hand 2 is distance two from both of the two 1s. The LCA of the right hand 2 is itself, on the right hand branch of the tree, and the LCA of each of the two 1s is down on the left hand branch of the tree. So the distance between the two is at least two, and we could tell this even if we had a large number of 2s anywhere below the position of the existing right-hand two, and a large number of 1s anywhere on the left hand subtree.
Do a pre-order traversal of the tree (or any traversal should work).
During this process, simply keep track of the closest 1 and 2, and update the distance whenever you find a 2 and the closest 1 is closer than the closest distance so far, or vice versa.
Code (C++, untested first draft): (hardcoded 1 and 2 for simplicity)
int getLeastDistance(Node *n, int *distTo1, int *distTo2)
{
if (n == NULL)
return;
int dist = LARGE_VALUE;
// process current node
if (n->data == 1)
{
dist = *distTo2;
*distTo1 = 0;
}
else if (n->data == 2)
{
dist = *distTo1;
*distTo2 = 0;
}
// go left
int newDistTo1 = *distTo1 + 1,
newDistTo2 = *distTo2 + 1;
dist = min(dist, getLeastDistance(n->left, &newDistTo1, &newDistTo2));
// update distances
*distTo1 = min(*distTo1, newDistTo1 + 1);
*distTo2 = min(*distTo2, newDistTo2 + 1);
// go right
newDistTo1 = *distTo1 + 1;
newDistTo2 = *distTo2 + 1;
dist = min(dist, getLeastDistance(n->right, &newDistTo1, &newDistTo2));
}
Caller:
Node root = ...;
int distTo1 = LARGE_VALUE, distTo2 = LARGE_VALUE;
int dist = getLeastDistance(&root, &distTo1, &distTo2);
Just be sure to make LARGE_VALUE far enough from the maximum value for int such that it won't overflow if incremented (-1 is probably safer, but it requires more complex code).

A fast way to find connected component in a 1-NN graph?

First of all, I got a N*N distance matrix, for each point, I calculated its nearest neighbor, so we had a N*2 matrix, It seems like this:
0 -> 1
1 -> 2
2 -> 3
3 -> 2
4 -> 2
5 -> 6
6 -> 7
7 -> 6
8 -> 6
9 -> 8
the second column was the nearest neighbor's index. So this was a special kind of directed
graph, with each vertex had and only had one out-degree.
Of course, we could first transform the N*2 matrix to a standard graph representation, and perform BFS/DFS to get the connected components.
But, given the characteristic of this special graph, is there any other fast way to do the job ?
I will be really appreciated.
Update:
I've implemented a simple algorithm for this case here.
Look, I did not use a union-find algorithm, because the data structure may make things not that easy, and I doubt whether It's the fastest way in my case(I meant practically).
You could argue that the _merge process could be time consuming, but if we swap the edges into the continuous place while assigning new label, the merging may cost little, but it need another N spaces to trace the original indices.
The fastest algorithm for finding connected components given an edge list is the union-find algorithm: for each node, hold the pointer to a node in the same set, with all edges converging to the same node, if you find a path of length at least 2, reconnect the bottom node upwards.
This will definitely run in linear time:
- push all edges into a union-find structure: O(n)
- store each node in its set (the union-find root)
and update the set of non-empty sets: O(n)
- return the set of non-empty sets (graph components).
Since the list of edges already almost forms a union-find tree, it is possible to skip the first step:
for each node
- if the node is not marked as collected
-- walk along the edges until you find an order-1 or order-2 loop,
collecting nodes en-route
-- reconnect all nodes to the end of the path and consider it a root for the set.
-- store all nodes in the set for the root.
-- update the set of non-empty sets.
-- mark all nodes as collected.
return the set of non-empty sets
The second algorithm is linear as well, but only a benchmark will tell if it's actually faster. The strength of the union-find algorithm is its optimization. This delays the optimization to the second step but removes the first step completely.
You can probably squeeze out a little more performance if you join the union step with the nearest neighbor calculation, then collect the sets in the second pass.
If you want to do it sequencially you can do it using weighted quick union and path compression .Complexity O(N+Mlog(log(N))).check this link .
Here is the pseudocode .honoring #pycho 's words
`
public class QuickUnion
{
private int[] id;
public QuickUnion(int N)
{
id = new int[N];
for (int i = 0; i < N; i++) id[i] = i;
}
public int root(int i)
{
while (i != id[i])
{
id[i] = id[id[i]];
i = id[i];
}
return i;
}
public boolean find(int p, int q)
{
return root(p) == root(q);
}
public void unite(int p, int q)
{
int i = root(p);
int j = root(q);
id[i] = j;
}
}
`
#reference https://www.cs.princeton.edu/~rs/AlgsDS07/01UnionFind.pdf
If you want to find connected components parallely, the asymptotic complexity can be reduced to O(log(log(N)) time using pointer jumping and weighted quick union with path compression. Check this link
https://vishwasshanbhog.wordpress.com/2016/05/04/efficient-parallel-algorithm-to-find-the-connected-components-of-the-graphs/
Since each node has only one outgoing edge, you can just traverse the graph one edge at a time until you get to a vertex you've already visited. An out-degree of 1 means any further traversal at this point will only take you where you've already been. The traversed vertices in that path are all in the same component.
In your example:
0->1->2->3->2, so [0,1,2,3] is a component
4->2, so update the component to [0,1,2,3,4]
5->6->7->6, so [5,6,7] is a component
8->6, so update the compoent to [5,6,7,8]
9->8, so update the compoent to [5,6,7,8,9]
You can visit each node exactly once, so time is O(n). Space is O(n) since all you need is a component id for each node, and a list of component ids.

Create Balanced Binary Search Tree from Sorted linked list

What's the best way to create a balanced binary search tree from a sorted singly linked list?
How about creating nodes bottom-up?
This solution's time complexity is O(N). Detailed explanation in my blog post:
http://www.leetcode.com/2010/11/convert-sorted-list-to-balanced-binary.html
Two traversal of the linked list is all we need. First traversal to get the length of the list (which is then passed in as the parameter n into the function), then create nodes by the list's order.
BinaryTree* sortedListToBST(ListNode *& list, int start, int end) {
if (start > end) return NULL;
// same as (start+end)/2, avoids overflow
int mid = start + (end - start) / 2;
BinaryTree *leftChild = sortedListToBST(list, start, mid-1);
BinaryTree *parent = new BinaryTree(list->data);
parent->left = leftChild;
list = list->next;
parent->right = sortedListToBST(list, mid+1, end);
return parent;
}
BinaryTree* sortedListToBST(ListNode *head, int n) {
return sortedListToBST(head, 0, n-1);
}
You can't do better than linear time, since you have to at least read all the elements of the list, so you might as well copy the list into an array (linear time) and then construct the tree efficiently in the usual way, i.e. if you had the list [9,12,18,23,24,51,84], then you'd start by making 23 the root, with children 12 and 51, then 9 and 18 become children of 12, and 24 and 84 become children of 51. Overall, should be O(n) if you do it right.
The actual algorithm, for what it's worth, is "take the middle element of the list as the root, and recursively build BSTs for the sub-lists to the left and right of the middle element and attach them below the root".
Best isn't only about asynmptopic run time. The sorted linked list has all the information needed to create the binary tree directly, and I think this is probably what they are looking for
Note that the first and third entries become children of the second, then the fourth node has chidren of the second and sixth (which has children the fifth and seventh) and so on...
in psuedo code
read three elements, make a node from them, mark as level 1, push on stack
loop
read three elemeents and make a node of them
mark as level 1
push on stack
loop while top two enties on stack have same level (n)
make node of top two entries, mark as level n + 1, push on stack
while elements remain in list
(with a bit of adjustment for when there's less than three elements left or an unbalanced tree at any point)
EDIT:
At any point, there is a left node of height N on the stack. Next step is to read one element, then read and construct another node of height N on the stack. To construct a node of height N, make and push a node of height N -1 on the stack, then read an element, make another node of height N-1 on the stack -- which is a recursive call.
Actually, this means the algorithm (even as modified) won't produce a balanced tree. If there are 2N+1 nodes, it will produce a tree with 2N-1 values on the left, and 1 on the right.
So I think #sgolodetz's answer is better, unless I can think of a way of rebalancing the tree as it's built.
Trick question!
The best way is to use the STL, and advantage yourself of the fact that the sorted associative container ADT, of which set is an implementation, demands insertion of sorted ranges have amortized linear time. Any passable set of core data structures for any language should offer a similar guarantee. For a real answer, see the quite clever solutions others have provided.
What's that? I should offer something useful?
Hum...
How about this?
The smallest possible meaningful tree in a balanced binary tree is 3 nodes.
A parent, and two children. The very first instance of such a tree is the first three elements. Child-parent-Child. Let's now imagine this as a single node. Okay, well, we no longer have a tree. But we know that the shape we want is Child-parent-Child.
Done for a moment with our imaginings, we want to keep a pointer to the parent in that initial triumvirate. But it's singly linked!
We'll want to have four pointers, which I'll call A, B, C, and D. So, we move A to 1, set B equal to A and advance it one. Set C equal to B, and advance it two. The node under B already points to its right-child-to-be. We build our initial tree. We leave B at the parent of Tree one. C is sitting at the node that will have our two minimal trees as children. Set A equal to C, and advance it one. Set D equal to A, and advance it one. We can now build our next minimal tree. D points to the root of that tree, B points to the root of the other, and C points to the... the new root from which we will hang our two minimal trees.
How about some pictures?
[A][B][-][C]
With our image of a minimal tree as a node...
[B = Tree][C][A][D][-]
And then
[Tree A][C][Tree B]
Except we have a problem. The node two after D is our next root.
[B = Tree A][C][A][D][-][Roooooot?!]
It would be a lot easier on us if we could simply maintain a pointer to it instead of to it and C. Turns out, since we know it will point to C, we can go ahead and start constructing the node in the binary tree that will hold it, and as part of this we can enter C into it as a left-node. How can we do this elegantly?
Set the pointer of the Node under C to the node Under B.
It's cheating in every sense of the word, but by using this trick, we free up B.
Alternatively, you can be sane, and actually start building out the node structure. After all, you really can't reuse the nodes from the SLL, they're probably POD structs.
So now...
[TreeA]<-[C][A][D][-][B]
[TreeA]<-[C]->[TreeB][B]
And... Wait a sec. We can use this same trick to free up C, if we just let ourselves think of it as a single node instead of a tree. Because after all, it really is just a single node.
[TreeC]<-[B][A][D][-][C]
We can further generalize our tricks.
[TreeC]<-[B][TreeD]<-[C][-]<-[D][-][A]
[TreeC]<-[B][TreeD]<-[C]->[TreeE][A]
[TreeC]<-[B]->[TreeF][A]
[TreeG]<-[A][B][C][-][D]
[TreeG]<-[A][-]<-[C][-][D]
[TreeG]<-[A][TreeH]<-[D][B][C][-]
[TreeG]<-[A][TreeH]<-[D][-]<-[C][-][B]
[TreeG]<-[A][TreeJ]<-[B][-]<-[C][-][D]
[TreeG]<-[A][TreeJ]<-[B][TreeK]<-[D][-]<-[C][-]
[TreeG]<-[A][TreeJ]<-[B][TreeK]<-[D][-]<-[C][-]
We are missing a critical step!
[TreeG]<-[A]->([TreeJ]<-[B]->([TreeK]<-[D][-]<-[C][-]))
Becomes :
[TreeG]<-[A]->[TreeL->([TreeK]<-[D][-]<-[C][-])][B]
[TreeG]<-[A]->[TreeL->([TreeK]<-[D]->[TreeM])][B]
[TreeG]<-[A]->[TreeL->[TreeN]][B]
[TreeG]<-[A]->[TreeO][B]
[TreeP]<-[B]
Obviously, the algorithm can be cleaned up considerably, but I thought it would be interesting to demonstrate how one can optimize as you go by iteratively designing your algorithm. I think this kind of process is what a good employer should be looking for more than anything.
The trick, basically, is that each time we reach the next midpoint, which we know is a parent-to-be, we know that its left subtree is already finished. The other trick is that we are done with a node once it has two children and something pointing to it, even if all of the sub-trees aren't finished. Using this, we can get what I am pretty sure is a linear time solution, as each element is touched only 4 times at most. The problem is that this relies on being given a list that will form a truly balanced binary search tree. There are, in other words, some hidden constraints that may make this solution either much harder to apply, or impossible. For example, if you have an odd number of elements, or if there are a lot of non-unique values, this starts to produce a fairly silly tree.
Considerations:
Render the element unique.
Insert a dummy element at the end if the number of nodes is odd.
Sing longingly for a more naive implementation.
Use a deque to keep the roots of completed subtrees and the midpoints in, instead of mucking around with my second trick.
This is a python implementation:
def sll_to_bbst(sll, start, end):
"""Build a balanced binary search tree from sorted linked list.
This assumes that you have a class BinarySearchTree, with properties
'l_child' and 'r_child'.
Params:
sll: sorted linked list, any data structure with 'popleft()' method,
which removes and returns the leftmost element of the list. The
easiest thing to do is to use 'collections.deque' for the sorted
list.
start: int, start index, on initial call set to 0
end: int, on initial call should be set to len(sll)
Returns:
A balanced instance of BinarySearchTree
This is a python implementation of solution found here:
http://leetcode.com/2010/11/convert-sorted-list-to-balanced-binary.html
"""
if start >= end:
return None
middle = (start + end) // 2
l_child = sll_to_bbst(sll, start, middle)
root = BinarySearchTree(sll.popleft())
root.l_child = l_child
root.r_child = sll_to_bbst(sll, middle+1, end)
return root
Instead of the sorted linked list i was asked on a sorted array (doesn't matter though logically, but yes run-time varies) to create a BST of minimal height, following is the code i could get out:
typedef struct Node{
struct Node *left;
int info;
struct Node *right;
}Node_t;
Node_t* Bin(int low, int high) {
Node_t* node = NULL;
int mid = 0;
if(low <= high) {
mid = (low+high)/2;
node = CreateNode(a[mid]);
printf("DEBUG: creating node for %d\n", a[mid]);
if(node->left == NULL) {
node->left = Bin(low, mid-1);
}
if(node->right == NULL) {
node->right = Bin(mid+1, high);
}
return node;
}//if(low <=high)
else {
return NULL;
}
}//Bin(low,high)
Node_t* CreateNode(int info) {
Node_t* node = malloc(sizeof(Node_t));
memset(node, 0, sizeof(Node_t));
node->info = info;
node->left = NULL;
node->right = NULL;
return node;
}//CreateNode(info)
// call function for an array example: 6 7 8 9 10 11 12, it gets you desired
// result
Bin(0,6);
HTH Somebody..
This is the pseudo recursive algorithm that I will suggest.
createTree(treenode *root, linknode *start, linknode *end)
{
if(start == end or start = end->next)
{
return;
}
ptrsingle=start;
ptrdouble=start;
while(ptrdouble != end and ptrdouble->next !=end)
{
ptrsignle=ptrsingle->next;
ptrdouble=ptrdouble->next->next;
}
//ptrsignle will now be at the middle element.
treenode cur_node=Allocatememory;
cur_node->data = ptrsingle->data;
if(root = null)
{
root = cur_node;
}
else
{
if(cur_node->data (less than) root->data)
root->left=cur_node
else
root->right=cur_node
}
createTree(cur_node, start, ptrSingle);
createTree(cur_node, ptrSingle, End);
}
Root = null;
The inital call will be createtree(Root, list, null);
We are doing the recursive building of the tree, but without using the intermediate array.
To get to the middle element every time we are advancing two pointers, one by one element, other by two elements. By the time the second pointer is at the end, the first pointer will be at the middle.
The running time will be o(nlogn). The extra space will be o(logn). Not an efficient solution for a real situation where you can have R-B tree which guarantees nlogn insertion. But good enough for interview.
Similar to #Stuart Golodetz and #Jake Kurzer the important thing is that the list is already sorted.
In #Stuart's answer, the array he presented is the backing data structure for the BST. The find operation for example would just need to perform index array calculations to traverse the tree. Growing the array and removing elements would be the trickier part, so I'd prefer a vector or other constant time lookup data structure.
#Jake's answer also uses this fact but unfortunately requires you to traverse the list to find each time to do a get(index) operation. But requires no additional memory usage.
Unless it was specifically mentioned by the interviewer that they wanted an object structure representation of the tree, I would use #Stuart's answer.
In a question like this you'd be given extra points for discussing the tradeoffs and all the options that you have.
Hope the detailed explanation on this post helps:
http://preparefortechinterview.blogspot.com/2013/10/planting-trees_1.html
A slightly improved implementation from #1337c0d3r in my blog.
// create a balanced BST using #len elements starting from #head & move #head forward by #len
TreeNode *sortedListToBSTHelper(ListNode *&head, int len) {
if (0 == len) return NULL;
auto left = sortedListToBSTHelper(head, len / 2);
auto root = new TreeNode(head->val);
root->left = left;
head = head->next;
root->right = sortedListToBSTHelper(head, (len - 1) / 2);
return root;
}
TreeNode *sortedListToBST(ListNode *head) {
int n = length(head);
return sortedListToBSTHelper(head, n);
}
If you know how many nodes are in the linked list, you can do it like this:
// Gives path to subtree being built. If branch[N] is false, branch
// less from the node at depth N, if true branch greater.
bool branch[max depth];
// If rem[N] is true, then for the current subtree at depth N, it's
// greater subtree has one more node than it's less subtree.
bool rem[max depth];
// Depth of root node of current subtree.
unsigned depth = 0;
// Number of nodes in current subtree.
unsigned num_sub = Number of nodes in linked list;
// The algorithm relies on a stack of nodes whose less subtree has
// been built, but whose right subtree has not yet been built. The
// stack is implemented as linked list. The nodes are linked
// together by having the "greater" handle of a node set to the
// next node in the list. "less_parent" is the handle of the first
// node in the list.
Node *less_parent = nullptr;
// h is root of current subtree, child is one of its children.
Node *h, *child;
Node *p = head of the sorted linked list of nodes;
LOOP // loop unconditionally
LOOP WHILE (num_sub > 2)
// Subtract one for root of subtree.
num_sub = num_sub - 1;
rem[depth] = !!(num_sub & 1); // true if num_sub is an odd number
branch[depth] = false;
depth = depth + 1;
num_sub = num_sub / 2;
END LOOP
IF (num_sub == 2)
// Build a subtree with two nodes, slanting to greater.
// I arbitrarily chose to always have the extra node in the
// greater subtree when there is an odd number of nodes to
// split between the two subtrees.
h = p;
p = the node after p in the linked list;
child = p;
p = the node after p in the linked list;
make h and p into a two-element AVL tree;
ELSE // num_sub == 1
// Build a subtree with one node.
h = p;
p = the next node in the linked list;
make h into a leaf node;
END IF
LOOP WHILE (depth > 0)
depth = depth - 1;
IF (not branch[depth])
// We've completed a less subtree, exit while loop.
EXIT LOOP;
END IF
// We've completed a greater subtree, so attach it to
// its parent (that is less than it). We pop the parent
// off the stack of less parents.
child = h;
h = less_parent;
less_parent = h->greater_child;
h->greater_child = child;
num_sub = 2 * (num_sub - rem[depth]) + rem[depth] + 1;
IF (num_sub & (num_sub - 1))
// num_sub is not a power of 2
h->balance_factor = 0;
ELSE
// num_sub is a power of 2
h->balance_factor = 1;
END IF
END LOOP
IF (num_sub == number of node in original linked list)
// We've completed the full tree, exit outer unconditional loop
EXIT LOOP;
END IF
// The subtree we've completed is the less subtree of the
// next node in the sequence.
child = h;
h = p;
p = the next node in the linked list;
h->less_child = child;
// Put h onto the stack of less parents.
h->greater_child = less_parent;
less_parent = h;
// Proceed to creating greater than subtree of h.
branch[depth] = true;
num_sub = num_sub + rem[depth];
depth = depth + 1;
END LOOP
// h now points to the root of the completed AVL tree.
For an encoding of this in C++, see the build member function (currently at line 361) in https://github.com/wkaras/C-plus-plus-intrusive-container-templates/blob/master/avl_tree.h . It's actually more general, a template using any forward iterator rather than specifically a linked list.

Finding all cycles in a directed graph

How can I find (iterate over) ALL the cycles in a directed graph from/to a given node?
For example, I want something like this:
A->B->A
A->B->C->A
but not:
B->C->B
I found this page in my search and since cycles are not same as strongly connected components, I kept on searching and finally, I found an efficient algorithm which lists all (elementary) cycles of a directed graph. It is from Donald B. Johnson and the paper can be found in the following link:
http://www.cs.tufts.edu/comp/150GA/homeworks/hw1/Johnson%2075.PDF
A java implementation can be found in:
http://normalisiert.de/code/java/elementaryCycles.zip
A Mathematica demonstration of Johnson's algorithm can be found here, implementation can be downloaded from the right ("Download author code").
Note: Actually, there are many algorithms for this problem. Some of them are listed in this article:
http://dx.doi.org/10.1137/0205007
According to the article, Johnson's algorithm is the fastest one.
Depth first search with backtracking should work here.
Keep an array of boolean values to keep track of whether you visited a node before. If you run out of new nodes to go to (without hitting a node you have already been), then just backtrack and try a different branch.
The DFS is easy to implement if you have an adjacency list to represent the graph. For example adj[A] = {B,C} indicates that B and C are the children of A.
For example, pseudo-code below. "start" is the node you start from.
dfs(adj,node,visited):
if (visited[node]):
if (node == start):
"found a path"
return;
visited[node]=YES;
for child in adj[node]:
dfs(adj,child,visited)
visited[node]=NO;
Call the above function with the start node:
visited = {}
dfs(adj,start,visited)
The simplest choice I found to solve this problem was using the python lib called networkx.
It implements the Johnson's algorithm mentioned in the best answer of this question but it makes quite simple to execute.
In short you need the following:
import networkx as nx
import matplotlib.pyplot as plt
# Create Directed Graph
G=nx.DiGraph()
# Add a list of nodes:
G.add_nodes_from(["a","b","c","d","e"])
# Add a list of edges:
G.add_edges_from([("a","b"),("b","c"), ("c","a"), ("b","d"), ("d","e"), ("e","a")])
#Return a list of cycles described as a list o nodes
list(nx.simple_cycles(G))
Answer: [['a', 'b', 'd', 'e'], ['a', 'b', 'c']]
First of all - you do not really want to try find literally all cycles because if there is 1 then there is an infinite number of those. For example A-B-A, A-B-A-B-A etc. Or it may be possible to join together 2 cycles into an 8-like cycle etc., etc... The meaningful approach is to look for all so called simple cycles - those that do not cross themselves except in the start/end point. Then if you wish you can generate combinations of simple cycles.
One of the baseline algorithms for finding all simple cycles in a directed graph is this: Do a depth-first traversal of all simple paths (those that do not cross themselves) in the graph. Every time when the current node has a successor on the stack a simple cycle is discovered. It consists of the elements on the stack starting with the identified successor and ending with the top of the stack. Depth first traversal of all simple paths is similar to depth first search but you do not mark/record visited nodes other than those currently on the stack as stop points.
The brute force algorithm above is terribly inefficient and in addition to that generates multiple copies of the cycles. It is however the starting point of multiple practical algorithms which apply various enhancements in order to improve performance and avoid cycle duplication. I was surprised to find out some time ago that these algorithms are not readily available in textbooks and on the web. So I did some research and implemented 4 such algorithms and 1 algorithm for cycles in undirected graphs in an open source Java library here : http://code.google.com/p/niographs/ .
BTW, since I mentioned undirected graphs : The algorithm for those is different. Build a spanning tree and then every edge which is not part of the tree forms a simple cycle together with some edges in the tree. The cycles found this way form a so called cycle base. All simple cycles can then be found by combining 2 or more distinct base cycles. For more details see e.g. this : http://dspace.mit.edu/bitstream/handle/1721.1/68106/FTL_R_1982_07.pdf .
The DFS-based variants with back edges will find cycles indeed, but in many cases it will NOT be minimal cycles. In general DFS gives you the flag that there is a cycle but it is not good enough to actually find cycles. For example, imagine 5 different cycles sharing two edges. There is no simple way to identify cycles using just DFS (including backtracking variants).
Johnson's algorithm is indeed gives all unique simple cycles and has good time and space complexity.
But if you want to just find MINIMAL cycles (meaning that there may be more then one cycle going through any vertex and we are interested in finding minimal ones) AND your graph is not very large, you can try to use the simple method below.
It is VERY simple but rather slow compared to Johnson's.
So, one of the absolutely easiest way to find MINIMAL cycles is to use Floyd's algorithm to find minimal paths between all the vertices using adjacency matrix.
This algorithm is nowhere near as optimal as Johnson's, but it is so simple and its inner loop is so tight that for smaller graphs (<=50-100 nodes) it absolutely makes sense to use it.
Time complexity is O(n^3), space complexity O(n^2) if you use parent tracking and O(1) if you don't.
First of all let's find the answer to the question if there is a cycle.
The algorithm is dead-simple. Below is snippet in Scala.
val NO_EDGE = Integer.MAX_VALUE / 2
def shortestPath(weights: Array[Array[Int]]) = {
for (k <- weights.indices;
i <- weights.indices;
j <- weights.indices) {
val throughK = weights(i)(k) + weights(k)(j)
if (throughK < weights(i)(j)) {
weights(i)(j) = throughK
}
}
}
Originally this algorithm operates on weighted-edge graph to find all shortest paths between all pairs of nodes (hence the weights argument). For it to work correctly you need to provide 1 if there is a directed edge between the nodes or NO_EDGE otherwise.
After algorithm executes, you can check the main diagonal, if there are values less then NO_EDGE than this node participates in a cycle of length equal to the value. Every other node of the same cycle will have the same value (on the main diagonal).
To reconstruct the cycle itself we need to use slightly modified version of algorithm with parent tracking.
def shortestPath(weights: Array[Array[Int]], parents: Array[Array[Int]]) = {
for (k <- weights.indices;
i <- weights.indices;
j <- weights.indices) {
val throughK = weights(i)(k) + weights(k)(j)
if (throughK < weights(i)(j)) {
parents(i)(j) = k
weights(i)(j) = throughK
}
}
}
Parents matrix initially should contain source vertex index in an edge cell if there is an edge between the vertices and -1 otherwise.
After function returns, for each edge you will have reference to the parent node in the shortest path tree.
And then it's easy to recover actual cycles.
All in all we have the following program to find all minimal cycles
val NO_EDGE = Integer.MAX_VALUE / 2;
def shortestPathWithParentTracking(
weights: Array[Array[Int]],
parents: Array[Array[Int]]) = {
for (k <- weights.indices;
i <- weights.indices;
j <- weights.indices) {
val throughK = weights(i)(k) + weights(k)(j)
if (throughK < weights(i)(j)) {
parents(i)(j) = parents(i)(k)
weights(i)(j) = throughK
}
}
}
def recoverCycles(
cycleNodes: Seq[Int],
parents: Array[Array[Int]]): Set[Seq[Int]] = {
val res = new mutable.HashSet[Seq[Int]]()
for (node <- cycleNodes) {
var cycle = new mutable.ArrayBuffer[Int]()
cycle += node
var other = parents(node)(node)
do {
cycle += other
other = parents(other)(node)
} while(other != node)
res += cycle.sorted
}
res.toSet
}
and a small main method just to test the result
def main(args: Array[String]): Unit = {
val n = 3
val weights = Array(Array(NO_EDGE, 1, NO_EDGE), Array(NO_EDGE, NO_EDGE, 1), Array(1, NO_EDGE, NO_EDGE))
val parents = Array(Array(-1, 1, -1), Array(-1, -1, 2), Array(0, -1, -1))
shortestPathWithParentTracking(weights, parents)
val cycleNodes = parents.indices.filter(i => parents(i)(i) < NO_EDGE)
val cycles: Set[Seq[Int]] = recoverCycles(cycleNodes, parents)
println("The following minimal cycle found:")
cycles.foreach(c => println(c.mkString))
println(s"Total: ${cycles.size} cycle found")
}
and the output is
The following minimal cycle found:
012
Total: 1 cycle found
To clarify:
Strongly Connected Components will find all subgraphs that have at least one cycle in them, not all possible cycles in the graph. e.g. if you take all strongly connected components and collapse/group/merge each one of them into one node (i.e. a node per component), you'll get a tree with no cycles (a DAG actually). Each component (which is basically a subgraph with at least one cycle in it) can contain many more possible cycles internally, so SCC will NOT find all possible cycles, it will find all possible groups that have at least one cycle, and if you group them, then the graph will not have cycles.
to find all simple cycles in a graph, as others mentioned, Johnson's algorithm is a candidate.
I was given this as an interview question once, I suspect this has happened to you and you are coming here for help. Break the problem into three questions and it becomes easier.
how do you determine the next valid
route
how do you determine if a point has
been used
how do you avoid crossing over the
same point again
Problem 1)
Use the iterator pattern to provide a way of iterating route results. A good place to put the logic to get the next route is probably the "moveNext" of your iterator. To find a valid route, it depends on your data structure. For me it was a sql table full of valid route possibilities so I had to build a query to get the valid destinations given a source.
Problem 2)
Push each node as you find them into a collection as you get them, this means that you can see if you are "doubling back" over a point very easily by interrogating the collection you are building on the fly.
Problem 3)
If at any point you see you are doubling back, you can pop things off the collection and "back up". Then from that point try to "move forward" again.
Hack: if you are using Sql Server 2008 there is are some new "hierarchy" things you can use to quickly solve this if you structure your data in a tree.
In the case of undirected graph, a paper recently published (Optimal listing of cycles and st-paths in undirected graphs) offers an asymptotically optimal solution. You can read it here http://arxiv.org/abs/1205.2766 or here http://dl.acm.org/citation.cfm?id=2627951
I know it doesn't answer your question, but since the title of your question doesn't mention direction, it might still be useful for Google search
Start at node X and check for all child nodes (parent and child nodes are equivalent if undirected). Mark those child nodes as being children of X. From any such child node A, mark it's children of being children of A, X', where X' is marked as being 2 steps away.). If you later hit X and mark it as being a child of X'', that means X is in a 3 node cycle. Backtracking to it's parent is easy (as-is, the algorithm has no support for this so you'd find whichever parent has X').
Note: If graph is undirected or has any bidirectional edges, this algorithm gets more complicated, assuming you don't want to traverse the same edge twice for a cycle.
If what you want is to find all elementary circuits in a graph you can use the EC algorithm, by JAMES C. TIERNAN, found on a paper since 1970.
The very original EC algorithm as I managed to implement it in php (hope there are no mistakes is shown below). It can find loops too if there are any. The circuits in this implementation (that tries to clone the original) are the non zero elements. Zero here stands for non-existence (null as we know it).
Apart from that below follows an other implementation that gives the algorithm more independece, this means the nodes can start from anywhere even from negative numbers, e.g -4,-3,-2,.. etc.
In both cases it is required that the nodes are sequential.
You might need to study the original paper, James C. Tiernan Elementary Circuit Algorithm
<?php
echo "<pre><br><br>";
$G = array(
1=>array(1,2,3),
2=>array(1,2,3),
3=>array(1,2,3)
);
define('N',key(array_slice($G, -1, 1, true)));
$P = array(1=>0,2=>0,3=>0,4=>0,5=>0);
$H = array(1=>$P, 2=>$P, 3=>$P, 4=>$P, 5=>$P );
$k = 1;
$P[$k] = key($G);
$Circ = array();
#[Path Extension]
EC2_Path_Extension:
foreach($G[$P[$k]] as $j => $child ){
if( $child>$P[1] and in_array($child, $P)===false and in_array($child, $H[$P[$k]])===false ){
$k++;
$P[$k] = $child;
goto EC2_Path_Extension;
} }
#[EC3 Circuit Confirmation]
if( in_array($P[1], $G[$P[$k]])===true ){//if PATH[1] is not child of PATH[current] then don't have a cycle
$Circ[] = $P;
}
#[EC4 Vertex Closure]
if($k===1){
goto EC5_Advance_Initial_Vertex;
}
//afou den ksana theoreitai einai asfales na svisoume
for( $m=1; $m<=N; $m++){//H[P[k], m] <- O, m = 1, 2, . . . , N
if( $H[$P[$k-1]][$m]===0 ){
$H[$P[$k-1]][$m]=$P[$k];
break(1);
}
}
for( $m=1; $m<=N; $m++ ){//H[P[k], m] <- O, m = 1, 2, . . . , N
$H[$P[$k]][$m]=0;
}
$P[$k]=0;
$k--;
goto EC2_Path_Extension;
#[EC5 Advance Initial Vertex]
EC5_Advance_Initial_Vertex:
if($P[1] === N){
goto EC6_Terminate;
}
$P[1]++;
$k=1;
$H=array(
1=>array(1=>0,2=>0,3=>0,4=>0,5=>0),
2=>array(1=>0,2=>0,3=>0,4=>0,5=>0),
3=>array(1=>0,2=>0,3=>0,4=>0,5=>0),
4=>array(1=>0,2=>0,3=>0,4=>0,5=>0),
5=>array(1=>0,2=>0,3=>0,4=>0,5=>0)
);
goto EC2_Path_Extension;
#[EC5 Advance Initial Vertex]
EC6_Terminate:
print_r($Circ);
?>
then this is the other implementation, more independent of the graph, without goto and without array values, instead it uses array keys, the path, the graph and circuits are stored as array keys (use array values if you like, just change the required lines). The example graph start from -4 to show its independence.
<?php
$G = array(
-4=>array(-4=>true,-3=>true,-2=>true),
-3=>array(-4=>true,-3=>true,-2=>true),
-2=>array(-4=>true,-3=>true,-2=>true)
);
$C = array();
EC($G,$C);
echo "<pre>";
print_r($C);
function EC($G, &$C){
$CNST_not_closed = false; // this flag indicates no closure
$CNST_closed = true; // this flag indicates closure
// define the state where there is no closures for some node
$tmp_first_node = key($G); // first node = first key
$tmp_last_node = $tmp_first_node-1+count($G); // last node = last key
$CNST_closure_reset = array();
for($k=$tmp_first_node; $k<=$tmp_last_node; $k++){
$CNST_closure_reset[$k] = $CNST_not_closed;
}
// define the state where there is no closure for all nodes
for($k=$tmp_first_node; $k<=$tmp_last_node; $k++){
$H[$k] = $CNST_closure_reset; // Key in the closure arrays represent nodes
}
unset($tmp_first_node);
unset($tmp_last_node);
# Start algorithm
foreach($G as $init_node => $children){#[Jump to initial node set]
#[Initial Node Set]
$P = array(); // declare at starup, remove the old $init_node from path on loop
$P[$init_node]=true; // the first key in P is always the new initial node
$k=$init_node; // update the current node
// On loop H[old_init_node] is not cleared cause is never checked again
do{#Path 1,3,7,4 jump here to extend father 7
do{#Path from 1,3,8,5 became 2,4,8,5,6 jump here to extend child 6
$new_expansion = false;
foreach( $G[$k] as $child => $foo ){#Consider each child of 7 or 6
if( $child>$init_node and isset($P[$child])===false and $H[$k][$child]===$CNST_not_closed ){
$P[$child]=true; // add this child to the path
$k = $child; // update the current node
$new_expansion=true;// set the flag for expanding the child of k
break(1); // we are done, one child at a time
} } }while(($new_expansion===true));// Do while a new child has been added to the path
# If the first node is child of the last we have a circuit
if( isset($G[$k][$init_node])===true ){
$C[] = $P; // Leaving this out of closure will catch loops to
}
# Closure
if($k>$init_node){ //if k>init_node then alwaya count(P)>1, so proceed to closure
$new_expansion=true; // $new_expansion is never true, set true to expand father of k
unset($P[$k]); // remove k from path
end($P); $k_father = key($P); // get father of k
$H[$k_father][$k]=$CNST_closed; // mark k as closed
$H[$k] = $CNST_closure_reset; // reset k closure
$k = $k_father; // update k
} } while($new_expansion===true);//if we don't wnter the if block m has the old k$k_father_old = $k;
// Advance Initial Vertex Context
}//foreach initial
}//function
?>
I have analized and documented the EC but unfortunately the documentation is in Greek.
There are two steps (algorithms) involved in finding all cycles in a DAG.
The first step is to use Tarjan's algorithm to find the set of strongly connected components.
Start from any arbitrary vertex.
DFS from that vertex. For each node x, keep two numbers, dfs_index[x] and dfs_lowval[x].
dfs_index[x] stores when that node is visited, while dfs_lowval[x] = min(dfs_low[k]) where
k is all the children of x that is not the directly parent of x in the dfs-spanning tree.
All nodes with the same dfs_lowval[x] are in the same strongly connected component.
The second step is to find cycles (paths) within the connected components. My suggestion is to use a modified version of Hierholzer's algorithm.
The idea is:
Choose any starting vertex v, and follow a trail of edges from that vertex until you return to v.
It is not possible to get stuck at any vertex other than v, because the even degree of all vertices ensures that, when the trail enters another vertex w there must be an unused edge leaving w. The tour formed in this way is a closed tour, but may not cover all the vertices and edges of the initial graph.
As long as there exists a vertex v that belongs to the current tour but that has adjacent edges not part of the tour, start another trail from v, following unused edges until you return to v, and join the tour formed in this way to the previous tour.
Here is the link to a Java implementation with a test case:
http://stones333.blogspot.com/2013/12/find-cycles-in-directed-graph-dag.html
I stumbled over the following algorithm which seems to be more efficient than Johnson's algorithm (at least for larger graphs). I am however not sure about its performance compared to Tarjan's algorithm.
Additionally, I only checked it out for triangles so far. If interested, please see "Arboricity and Subgraph Listing Algorithms" by Norishige Chiba and Takao Nishizeki (http://dx.doi.org/10.1137/0214017)
DFS from the start node s, keep track of the DFS path during traversal, and record the path if you find an edge from node v in the path to s. (v,s) is a back-edge in the DFS tree and thus indicates a cycle containing s.
Regarding your question about the Permutation Cycle, read more here:
https://www.codechef.com/problems/PCYCLE
You can try this code (enter the size and the digits number):
# include<cstdio>
using namespace std;
int main()
{
int n;
scanf("%d",&n);
int num[1000];
int visited[1000]={0};
int vindex[2000];
for(int i=1;i<=n;i++)
scanf("%d",&num[i]);
int t_visited=0;
int cycles=0;
int start=0, index;
while(t_visited < n)
{
for(int i=1;i<=n;i++)
{
if(visited[i]==0)
{
vindex[start]=i;
visited[i]=1;
t_visited++;
index=start;
break;
}
}
while(true)
{
index++;
vindex[index]=num[vindex[index-1]];
if(vindex[index]==vindex[start])
break;
visited[vindex[index]]=1;
t_visited++;
}
vindex[++index]=0;
start=index+1;
cycles++;
}
printf("%d\n",cycles,vindex[0]);
for(int i=0;i<(n+2*cycles);i++)
{
if(vindex[i]==0)
printf("\n");
else
printf("%d ",vindex[i]);
}
}
DFS c++ version for the pseudo-code in second floor's answer:
void findCircleUnit(int start, int v, bool* visited, vector<int>& path) {
if(visited[v]) {
if(v == start) {
for(auto c : path)
cout << c << " ";
cout << endl;
return;
}
else
return;
}
visited[v] = true;
path.push_back(v);
for(auto i : G[v])
findCircleUnit(start, i, visited, path);
visited[v] = false;
path.pop_back();
}
http://www.me.utexas.edu/~bard/IP/Handouts/cycles.pdf
The CXXGraph library give a set of algorithms and functions to detect cycles.
For a full algorithm explanation visit the wiki.

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