Dijkstra's shortest path algorithm won't work - algorithm

I have a graph with positive edge weights and positive node weights. The length of a path is defined as the sum of all the edge weights along the path, plus the maximum node weight encountered along the path.
I'd initially thought that a modified Dijkstra would work, but I found a test case where it would fail. How should I go about solving this problem? Are there any standard algorithms I should look at?
My modified Dijkstra is as follows: At each node I record the shortest path so far, and also the maximum node weight I've seen so far, and use that to calculate the length to neighboring nodes. Please see my comment for the details.
Here's a graph where Dijkstra fails:
http://i.imgur.com/FQhRzXV.jpg
The numbers in green are the node labels. Everything in blue is weights (node and edge weights). Lets say I want to compute the shortest path between nodes 1 and 7 (labeled in green). The problem with Dijkstra is that the node 4 always records the path 1-8-9-4 since its shorter than path 1-2-3-4 (former length 9 vs latter length 13). But to reach node 7, path 1-8-9-4-5-6-7 is longer than 1-2-3-4-5-6-7.

If you can forgive one order larger polynomial time, then fairly easy algorithm:
ModifiedShortestPath(u, v, G) {
X = StandardardShorestPath(u, v, G);
E = heaviest edge in X
F = all edges in G of weight >= E
Y = ModifiedShortestPath(u, v, G - F); // recur here on G without the F edges
return Min(X, Y);
}
The runtime of this is |E| times more than your standard shortest path.

Your graph is not that clear to begin with (too many values in blue of unclear role), which makes answers even more difficult. A much better question, a simpler graph and some straight answers in this post.
What made it clear for me, and allowed me to correct my implementation and get the correct results, was that at the end of each repetition in the loop, when it was time to pick the next node/vertex, whose unvisited neighbours I should examine, I had to pick from the whole pool of unvisited vertices, not just from the unvisited neighbours of the currently examined node. I was under the false impression that once you pick a path at a crossroad, because the greedy nature of the algorithm takes you there, you can only follow it to the end, unvisited after unvisited node. No. You pick the next globally unvisited node each time based on the smallest tentative value, regardless of its position in the graph or whether it is connected to the current node.
I Hope that clears the confussion that others like me have experienced and has led them here.

Related

Dynamic Programming - Edges difference problem

I just started learning about Dynamic Programming, and in my assignment I was required to describe an algorithm that solves the following problem:
Let G be a directed graph, where every edge is colored either green or yellow, and a source vertex s. For every vertex in V, find a path that the difference between the number of green and yellow edges is minimal. That algorithm needs to be O(|V|+|E|) complexity for each vertex.
Input: Given a directed graph G=(V, E), a source vertex s in V and edges colored with this coloring function: For every edge e in the graph, c(e)->{yellow, green}. There is a path to every vertex v in V from the source vertex s.
The weight of a path 'P' in the graph, is the difference between the number of green edges and the number of yellow edges in the graph
Output: For every vertex v in V, return the minimal weight of a path P from s to v.
So I started thinking about a solution to this problem. I realized that I can exchange the colors with numbers, -1 and 1 and work from there, but so far I haven't been able to find a solution.
My most fleshed out solution looks at the group of neighbors of target a vertex and does the following:
Find the minimum weight between:
The sum of the "weight" of the edge (-1, 1) leading to a vertex 'k' from the current vertex's neighbor group, and the optimum of 'k'.
The optimum of the other neighbors, excluding the vertex 'k'.
terminate when reaching s or the neighbors group is empty.
However, this solution doesn't feel right, as it doesn't look at a vertex - but at a group of vertices, and I don't think it meets the complexity demands. I tried writing the formula: image
I tried experimenting with solutions that start from the vertex s and end at a target vertex v, but I was unable to reach a solid termination condition. For example, it can't terminate when reaching v, since there might be cycles involving v that result in a minimum result.
I was hoping to get some guidance on this problem, thanks in advance!
This doesn't necessarily strike me as a case for dynamic programming, so maybe I've missed something and there's a quicker dynamic solution, but you can achieve an O(VE) running time using a modified Bellman-Ford. This asymptotic time bound is not the same as O(V + E) per vertex! But for a connected graph (since the source can reach all the vertices) it is the same overall.
I'll leave you to look up the details of the Bellman Ford algorithm (for single source shortest paths), in the spirit of it being an assignment, but suffice it to say that your vertices could store a positive score for more yellow than green, a negative score for the opposite, and their weight in either case would be the absolute value of this attribute. Your 'relax' function would then operate as follows, assuming we use a score attribute on each vertex (this score is not the weight, it can be positive or negative):
RELAX(u, v):
new_score = u.score
if the edge u -> v is green:
new_score -= 1
else:
new_score += 1
if abs(new_score) < v.score:
v.score = new_score

Why priority-queue based Dijkstra shortest-path algorithm cannot work for negative-weights graph? [duplicate]

Can somebody tell me why Dijkstra's algorithm for single source shortest path assumes that the edges must be non-negative.
I am talking about only edges not the negative weight cycles.
Recall that in Dijkstra's algorithm, once a vertex is marked as "closed" (and out of the open set) - the algorithm found the shortest path to it, and will never have to develop this node again - it assumes the path developed to this path is the shortest.
But with negative weights - it might not be true. For example:
A
/ \
/ \
/ \
5 2
/ \
B--(-10)-->C
V={A,B,C} ; E = {(A,C,2), (A,B,5), (B,C,-10)}
Dijkstra from A will first develop C, and will later fail to find A->B->C
EDIT a bit deeper explanation:
Note that this is important, because in each relaxation step, the algorithm assumes the "cost" to the "closed" nodes is indeed minimal, and thus the node that will next be selected is also minimal.
The idea of it is: If we have a vertex in open such that its cost is minimal - by adding any positive number to any vertex - the minimality will never change.
Without the constraint on positive numbers - the above assumption is not true.
Since we do "know" each vertex which was "closed" is minimal - we can safely do the relaxation step - without "looking back". If we do need to "look back" - Bellman-Ford offers a recursive-like (DP) solution of doing so.
Consider the graph shown below with the source as Vertex A. First try running Dijkstra’s algorithm yourself on it.
When I refer to Dijkstra’s algorithm in my explanation I will be talking about the Dijkstra's Algorithm as implemented below,
So starting out the values (the distance from the source to the vertex) initially assigned to each vertex are,
We first extract the vertex in Q = [A,B,C] which has smallest value, i.e. A, after which Q = [B, C]. Note A has a directed edge to B and C, also both of them are in Q, therefore we update both of those values,
Now we extract C as (2<5), now Q = [B]. Note that C is connected to nothing, so line16 loop doesn't run.
Finally we extract B, after which . Note B has a directed edge to C but C isn't present in Q therefore we again don't enter the for loop in line16,
So we end up with the distances as
Note how this is wrong as the shortest distance from A to C is 5 + -10 = -5, when you go .
So for this graph Dijkstra's Algorithm wrongly computes the distance from A to C.
This happens because Dijkstra's Algorithm does not try to find a shorter path to vertices which are already extracted from Q.
What the line16 loop is doing is taking the vertex u and saying "hey looks like we can go to v from source via u, is that (alt or alternative) distance any better than the current dist[v] we got? If so lets update dist[v]"
Note that in line16 they check all neighbors v (i.e. a directed edge exists from u to v), of u which are still in Q. In line14 they remove visited notes from Q. So if x is a visited neighbour of u, the path is not even considered as a possible shorter way from source to v.
In our example above, C was a visited neighbour of B, thus the path was not considered, leaving the current shortest path unchanged.
This is actually useful if the edge weights are all positive numbers, because then we wouldn't waste our time considering paths that can't be shorter.
So I say that when running this algorithm if x is extracted from Q before y, then its not possible to find a path - which is shorter. Let me explain this with an example,
As y has just been extracted and x had been extracted before itself, then dist[y] > dist[x] because otherwise y would have been extracted before x. (line 13 min distance first)
And as we already assumed that the edge weights are positive, i.e. length(x,y)>0. So the alternative distance (alt) via y is always sure to be greater, i.e. dist[y] + length(x,y)> dist[x]. So the value of dist[x] would not have been updated even if y was considered as a path to x, thus we conclude that it makes sense to only consider neighbors of y which are still in Q (note comment in line16)
But this thing hinges on our assumption of positive edge length, if length(u,v)<0 then depending on how negative that edge is we might replace the dist[x] after the comparison in line18.
So any dist[x] calculation we make will be incorrect if x is removed before all vertices v - such that x is a neighbour of v with negative edge connecting them - is removed.
Because each of those v vertices is the second last vertex on a potential "better" path from source to x, which is discarded by Dijkstra’s algorithm.
So in the example I gave above, the mistake was because C was removed before B was removed. While that C was a neighbour of B with a negative edge!
Just to clarify, B and C are A's neighbours. B has a single neighbour C and C has no neighbours. length(a,b) is the edge length between the vertices a and b.
Dijkstra's algorithm assumes paths can only become 'heavier', so that if you have a path from A to B with a weight of 3, and a path from A to C with a weight of 3, there's no way you can add an edge and get from A to B through C with a weight of less than 3.
This assumption makes the algorithm faster than algorithms that have to take negative weights into account.
Correctness of Dijkstra's algorithm:
We have 2 sets of vertices at any step of the algorithm. Set A consists of the vertices to which we have computed the shortest paths. Set B consists of the remaining vertices.
Inductive Hypothesis: At each step we will assume that all previous iterations are correct.
Inductive Step: When we add a vertex V to the set A and set the distance to be dist[V], we must prove that this distance is optimal. If this is not optimal then there must be some other path to the vertex V that is of shorter length.
Suppose this some other path goes through some vertex X.
Now, since dist[V] <= dist[X] , therefore any other path to V will be atleast dist[V] length, unless the graph has negative edge lengths.
Thus for dijkstra's algorithm to work, the edge weights must be non negative.
Dijkstra's Algorithm assumes that all edges are positive weighted and this assumption helps the algorithm run faster ( O(E*log(V) ) than others which take into account the possibility of negative edges (e.g bellman ford's algorithm with complexity of O(V^3)).
This algorithm wont give the correct result in the following case (with a -ve edge) where A is the source vertex:
Here, the shortest distance to vertex D from source A should have been 6. But according to Dijkstra's method the shortest distance will be 7 which is incorrect.
Also, Dijkstra's Algorithm may sometimes give correct solution even if there are negative edges. Following is an example of such a case:
However, It will never detect a negative cycle and always produce a result which will always be incorrect if a negative weight cycle is reachable from the source, as in such a case there exists no shortest path in the graph from the source vertex.
Try Dijkstra's algorithm on the following graph, assuming A is the source node and D is the destination, to see what is happening:
Note that you have to follow strictly the algorithm definition and you should not follow your intuition (which tells you the upper path is shorter).
The main insight here is that the algorithm only looks at all directly connected edges and it takes the smallest of these edge. The algorithm does not look ahead. You can modify this behavior , but then it is not the Dijkstra algorithm anymore.
You can use dijkstra's algorithm with negative edges not including negative cycle, but you must allow a vertex can be visited multiple times and that version will lose it's fast time complexity.
In that case practically I've seen it's better to use SPFA algorithm which have normal queue and can handle negative edges.
Recall that in Dijkstra's algorithm, once a vertex is marked as "closed" (and out of the open set) -it assumes that any node originating from it will lead to greater distance so, the algorithm found the shortest path to it, and will never have to develop this node again, but this doesn't hold true in case of negative weights.
The other answers so far demonstrate pretty well why Dijkstra's algorithm cannot handle negative weights on paths.
But the question itself is maybe based on a wrong understanding of the weight of paths. If negative weights on paths would be allowed in pathfinding algorithms in general, then you would get permanent loops that would not stop.
Consider this:
A <- 5 -> B <- (-1) -> C <- 5 -> D
What is the optimal path between A and D?
Any pathfinding algorithm would have to continuously loop between B and C because doing so would reduce the weight of the total path. So allowing negative weights for a connection would render any pathfindig algorithm moot, maybe except if you limit each connection to be used only once.
So, to explain this in more detail, consider the following paths and weights:
Path | Total weight
ABCD | 9
ABCBCD | 7
ABCBCBCD | 5
ABCBCBCBCD | 3
ABCBCBCBCBCD | 1
ABCBCBCBCBCBCD | -1
...
So, what's the perfect path? Any time the algorithm adds a BC step, it reduces the total weight by 2.
So the optimal path is A (BC) D with the BC part being looped forever.
Since Dijkstra's goal is to find the optimal path (not just any path), it, by definition, cannot work with negative weights, since it cannot find the optimal path.
Dijkstra will actually not loop, since it keeps a list of nodes that it has visited. But it will not find a perfect path, but instead just any path.
Adding few points to the explanation, on top of the previous answers, for the following simple example,
Dijktra's algorithm being greedy, it first finds the minimum distance vertex C from the source vertex A greedily and assigns the distance d[C] (from vertex A) to the weight of the edge AC.
The underlying assumption is that since C was picked first, there is no other vertex V in the graph s.t. w(AV) < w(AC), otherwise V would have been picked instead of C, by the algorithm.
Since by above logic, w(AC) <= w(AV), for all vertex V different from the vertices A and C. Now, clearly any other path P that starts from A and ends in C, going through V , i.e., the path P = A -> V -> ... -> C, will be longer in length (>= 2) and total cost of the path P will be sum of the edges on it, i.e., cost(P) >= w(AV) >= w(AC), assuming all edges on P have non-negative weights, so that
C can be safely removed from the queue Q, since d[C] can never get smaller / relaxed further under this assumption.
Obviously, the above assumption does not hold when some.edge on P is negative, in a which case d[C] may decrease further, but the algorithm can't take care of this scenario, since by that time it has removed C from the queue Q.
In Unweighted graph
Dijkstra can even work without set or priority queue, even if you just use STACK the algorithm will work but with Stack its time of execution will increase
Dijkstra don't repeat a node once its processed becoz it always tooks the minimum route , which means if you come to that node via any other path it will certainly have greater distance
For ex -
(0)
/
6 5
/
(2) (1)
\ /
4 7
\ /
(9)
here once you get to node 1 via 0 (as its minimum out of 5 and 6)so now there is no way you can get a minimum value for reaching 1
because all other path will add value to 5 and not decrease it
more over with Negative weights it will fall into infinite loop
In Unweighted graph
Dijkstra Algo will fall into loop if it has negative weight
In Directed graph
Dijkstra Algo will give RIGHT ANSWER except in case of Negative Cycle
Who says Dijkstra never visit a node more than once are 500% wrong
also who says Dijkstra can't work with negative weight are wrong

Why doesn't Dijkstra's algorithm work for negative weight edges?

Can somebody tell me why Dijkstra's algorithm for single source shortest path assumes that the edges must be non-negative.
I am talking about only edges not the negative weight cycles.
Recall that in Dijkstra's algorithm, once a vertex is marked as "closed" (and out of the open set) - the algorithm found the shortest path to it, and will never have to develop this node again - it assumes the path developed to this path is the shortest.
But with negative weights - it might not be true. For example:
A
/ \
/ \
/ \
5 2
/ \
B--(-10)-->C
V={A,B,C} ; E = {(A,C,2), (A,B,5), (B,C,-10)}
Dijkstra from A will first develop C, and will later fail to find A->B->C
EDIT a bit deeper explanation:
Note that this is important, because in each relaxation step, the algorithm assumes the "cost" to the "closed" nodes is indeed minimal, and thus the node that will next be selected is also minimal.
The idea of it is: If we have a vertex in open such that its cost is minimal - by adding any positive number to any vertex - the minimality will never change.
Without the constraint on positive numbers - the above assumption is not true.
Since we do "know" each vertex which was "closed" is minimal - we can safely do the relaxation step - without "looking back". If we do need to "look back" - Bellman-Ford offers a recursive-like (DP) solution of doing so.
Consider the graph shown below with the source as Vertex A. First try running Dijkstra’s algorithm yourself on it.
When I refer to Dijkstra’s algorithm in my explanation I will be talking about the Dijkstra's Algorithm as implemented below,
So starting out the values (the distance from the source to the vertex) initially assigned to each vertex are,
We first extract the vertex in Q = [A,B,C] which has smallest value, i.e. A, after which Q = [B, C]. Note A has a directed edge to B and C, also both of them are in Q, therefore we update both of those values,
Now we extract C as (2<5), now Q = [B]. Note that C is connected to nothing, so line16 loop doesn't run.
Finally we extract B, after which . Note B has a directed edge to C but C isn't present in Q therefore we again don't enter the for loop in line16,
So we end up with the distances as
Note how this is wrong as the shortest distance from A to C is 5 + -10 = -5, when you go .
So for this graph Dijkstra's Algorithm wrongly computes the distance from A to C.
This happens because Dijkstra's Algorithm does not try to find a shorter path to vertices which are already extracted from Q.
What the line16 loop is doing is taking the vertex u and saying "hey looks like we can go to v from source via u, is that (alt or alternative) distance any better than the current dist[v] we got? If so lets update dist[v]"
Note that in line16 they check all neighbors v (i.e. a directed edge exists from u to v), of u which are still in Q. In line14 they remove visited notes from Q. So if x is a visited neighbour of u, the path is not even considered as a possible shorter way from source to v.
In our example above, C was a visited neighbour of B, thus the path was not considered, leaving the current shortest path unchanged.
This is actually useful if the edge weights are all positive numbers, because then we wouldn't waste our time considering paths that can't be shorter.
So I say that when running this algorithm if x is extracted from Q before y, then its not possible to find a path - which is shorter. Let me explain this with an example,
As y has just been extracted and x had been extracted before itself, then dist[y] > dist[x] because otherwise y would have been extracted before x. (line 13 min distance first)
And as we already assumed that the edge weights are positive, i.e. length(x,y)>0. So the alternative distance (alt) via y is always sure to be greater, i.e. dist[y] + length(x,y)> dist[x]. So the value of dist[x] would not have been updated even if y was considered as a path to x, thus we conclude that it makes sense to only consider neighbors of y which are still in Q (note comment in line16)
But this thing hinges on our assumption of positive edge length, if length(u,v)<0 then depending on how negative that edge is we might replace the dist[x] after the comparison in line18.
So any dist[x] calculation we make will be incorrect if x is removed before all vertices v - such that x is a neighbour of v with negative edge connecting them - is removed.
Because each of those v vertices is the second last vertex on a potential "better" path from source to x, which is discarded by Dijkstra’s algorithm.
So in the example I gave above, the mistake was because C was removed before B was removed. While that C was a neighbour of B with a negative edge!
Just to clarify, B and C are A's neighbours. B has a single neighbour C and C has no neighbours. length(a,b) is the edge length between the vertices a and b.
Dijkstra's algorithm assumes paths can only become 'heavier', so that if you have a path from A to B with a weight of 3, and a path from A to C with a weight of 3, there's no way you can add an edge and get from A to B through C with a weight of less than 3.
This assumption makes the algorithm faster than algorithms that have to take negative weights into account.
Correctness of Dijkstra's algorithm:
We have 2 sets of vertices at any step of the algorithm. Set A consists of the vertices to which we have computed the shortest paths. Set B consists of the remaining vertices.
Inductive Hypothesis: At each step we will assume that all previous iterations are correct.
Inductive Step: When we add a vertex V to the set A and set the distance to be dist[V], we must prove that this distance is optimal. If this is not optimal then there must be some other path to the vertex V that is of shorter length.
Suppose this some other path goes through some vertex X.
Now, since dist[V] <= dist[X] , therefore any other path to V will be atleast dist[V] length, unless the graph has negative edge lengths.
Thus for dijkstra's algorithm to work, the edge weights must be non negative.
Dijkstra's Algorithm assumes that all edges are positive weighted and this assumption helps the algorithm run faster ( O(E*log(V) ) than others which take into account the possibility of negative edges (e.g bellman ford's algorithm with complexity of O(V^3)).
This algorithm wont give the correct result in the following case (with a -ve edge) where A is the source vertex:
Here, the shortest distance to vertex D from source A should have been 6. But according to Dijkstra's method the shortest distance will be 7 which is incorrect.
Also, Dijkstra's Algorithm may sometimes give correct solution even if there are negative edges. Following is an example of such a case:
However, It will never detect a negative cycle and always produce a result which will always be incorrect if a negative weight cycle is reachable from the source, as in such a case there exists no shortest path in the graph from the source vertex.
Try Dijkstra's algorithm on the following graph, assuming A is the source node and D is the destination, to see what is happening:
Note that you have to follow strictly the algorithm definition and you should not follow your intuition (which tells you the upper path is shorter).
The main insight here is that the algorithm only looks at all directly connected edges and it takes the smallest of these edge. The algorithm does not look ahead. You can modify this behavior , but then it is not the Dijkstra algorithm anymore.
You can use dijkstra's algorithm with negative edges not including negative cycle, but you must allow a vertex can be visited multiple times and that version will lose it's fast time complexity.
In that case practically I've seen it's better to use SPFA algorithm which have normal queue and can handle negative edges.
Recall that in Dijkstra's algorithm, once a vertex is marked as "closed" (and out of the open set) -it assumes that any node originating from it will lead to greater distance so, the algorithm found the shortest path to it, and will never have to develop this node again, but this doesn't hold true in case of negative weights.
The other answers so far demonstrate pretty well why Dijkstra's algorithm cannot handle negative weights on paths.
But the question itself is maybe based on a wrong understanding of the weight of paths. If negative weights on paths would be allowed in pathfinding algorithms in general, then you would get permanent loops that would not stop.
Consider this:
A <- 5 -> B <- (-1) -> C <- 5 -> D
What is the optimal path between A and D?
Any pathfinding algorithm would have to continuously loop between B and C because doing so would reduce the weight of the total path. So allowing negative weights for a connection would render any pathfindig algorithm moot, maybe except if you limit each connection to be used only once.
So, to explain this in more detail, consider the following paths and weights:
Path | Total weight
ABCD | 9
ABCBCD | 7
ABCBCBCD | 5
ABCBCBCBCD | 3
ABCBCBCBCBCD | 1
ABCBCBCBCBCBCD | -1
...
So, what's the perfect path? Any time the algorithm adds a BC step, it reduces the total weight by 2.
So the optimal path is A (BC) D with the BC part being looped forever.
Since Dijkstra's goal is to find the optimal path (not just any path), it, by definition, cannot work with negative weights, since it cannot find the optimal path.
Dijkstra will actually not loop, since it keeps a list of nodes that it has visited. But it will not find a perfect path, but instead just any path.
Adding few points to the explanation, on top of the previous answers, for the following simple example,
Dijktra's algorithm being greedy, it first finds the minimum distance vertex C from the source vertex A greedily and assigns the distance d[C] (from vertex A) to the weight of the edge AC.
The underlying assumption is that since C was picked first, there is no other vertex V in the graph s.t. w(AV) < w(AC), otherwise V would have been picked instead of C, by the algorithm.
Since by above logic, w(AC) <= w(AV), for all vertex V different from the vertices A and C. Now, clearly any other path P that starts from A and ends in C, going through V , i.e., the path P = A -> V -> ... -> C, will be longer in length (>= 2) and total cost of the path P will be sum of the edges on it, i.e., cost(P) >= w(AV) >= w(AC), assuming all edges on P have non-negative weights, so that
C can be safely removed from the queue Q, since d[C] can never get smaller / relaxed further under this assumption.
Obviously, the above assumption does not hold when some.edge on P is negative, in a which case d[C] may decrease further, but the algorithm can't take care of this scenario, since by that time it has removed C from the queue Q.
In Unweighted graph
Dijkstra can even work without set or priority queue, even if you just use STACK the algorithm will work but with Stack its time of execution will increase
Dijkstra don't repeat a node once its processed becoz it always tooks the minimum route , which means if you come to that node via any other path it will certainly have greater distance
For ex -
(0)
/
6 5
/
(2) (1)
\ /
4 7
\ /
(9)
here once you get to node 1 via 0 (as its minimum out of 5 and 6)so now there is no way you can get a minimum value for reaching 1
because all other path will add value to 5 and not decrease it
more over with Negative weights it will fall into infinite loop
In Unweighted graph
Dijkstra Algo will fall into loop if it has negative weight
In Directed graph
Dijkstra Algo will give RIGHT ANSWER except in case of Negative Cycle
Who says Dijkstra never visit a node more than once are 500% wrong
also who says Dijkstra can't work with negative weight are wrong

Using a minimum spanning tree algorithm

Suppose I have a weighted non-directed graph G = (V,E). Each vertex has a list of elements.
We start in a vertex root and start looking for all occurances of elements with a value x. We wish to travel the least amount of distance (in terms of edge weight) to uncover all occurances of elements with value x.
The way I think of it, a MST will contain all vertices (and hence all vertices that satisfy our condition). Therefore the algorithm to uncover all occurances can just be done by finding the shortest path from root to all other vertices (this will be done on the MST of course).
Edit :
As Louis pointed out, the MST will not work in all cases if the root is chosen arbitrarily. However, to make things clear, the root is part of the input and therefore there will be one and only one MST possible (given that the edges have distinct weights). This spanning tree will indeed have all minimum-cost paths to all other vertices in the graph starting from the root.
I don't think this will work. Consider the following example:
x
|
3
|
y--3--root
| /
5 3
| /
| /
x
The minimum spanning tree contains all three edges with weight 3, but this is clearly not the optimum solution.
If I understand the problem correctly, you want to find the minimum-weight tree in the graph which includes all vertices labeled x. (That is, the correct answer would have total weight 8, and would be the two edges drawn vertically in this drawing.) But this does not include your arbitrarily selected root at all.
I am pretty confident that the following variation on Prim's algorithm would work. Not sure if it's optimal, though.
Let's say the label we are looking for is called L.
Use an all-pairs shortest path algorithm to compute d(v, w) for all v, w.
Pick some node labeled L; call this the root. (We can be sure that this will be in the result tree, since we are including all nodes labeled L.)
Initialize a priority queue with the root initialized to 0. (The priority queue will consist of vertices labeled L, and their minimum distance from any node in the tree, including vertices not labeled L.)
While the priority queue is nonempty, do the following:
Pick out the top vertex in the queue; call it v, and its distance from the tree d.
For each vertex w on the path from v to the tree, v inclusive, find the nearest L-labeled node x to w, and add x to the priority queue, or update its priority. Add w to the tree.
The answer is no, if I'm understanding correctly. Finding the minimum spanning tree will contain all vertices V, but you only want to find the vertices with value x. Thus, your MST result may have unneeded vertices adding extra path length and therefore be sub-optimal.
An example has been given where the MST M1 from Root differs from an MST M2 containing all x nodes but not containing Root.
Here's an example where Root is in both MST's: Let graph G contain nodes R,S,T,U,V (R=Root), and a clockwise path R-S-T-U-V-R, with edge weights 1,1,3,2,2 going clockwise, and x at R, S, T, U. The first MST, M1, will have subtrees S-T and V-U below R, with cost 6 = 2+4, and cost-3 edge T-U not included in M1. But M2 has subtree S-T-U (only) below R, at cost 5.
Negative. If the idea is to find for every node that contains 'x' a separate path from root to it, and minimize the total cost of the paths, then you can just use simple shortest-path calculation separately for every node starting from the root, and put the paths together.
Some of those shortest paths will not be in the minimum spanning tree, so if this is your goal, the MST solution does not work. MST optimizes the cost of the tree, not the sum of costs of paths from root to the nodes.
If your idea is to find one path that starts from root and traverses through all nodes that contain 'x', then this is the traveling salesman problem and it is an NP-complete optimization problem, i.e. very hard.

Dijkstra's algorithm with negative edges on a directed graph

What if the only negative edge costs are coming from the initial node? Will the algorithm still work?
I feel like yes, because I can't think of a counter-example, but I'm having trouble proving it. Is there a counter-example?
Negative edges are a problem for Dijkstra's because there's no guarantee that the edge you pick produces the shortest path if there is an edge you can pick later that is largely negatively weighted. But if the only negative edges are coming out of the initial node, I don't see the problem.
I'm not looking for an algorithm. I'm looking for some insight into the Dijkstra's.
I'm talking about a directed graph, if that makes a difference.
The trouble with having a negative-cost edge is that you can go back and forth along it as many times as you like.
If you impose a rule that an edge may not be used more than once, you still have a problem. Dijkstra's algorithm involves marking a node as "visited", when it's distance from the initial node is considered know once and for all. This happens before all of the edges have been examined; the shortest path from the initial node to node X has been found, all other paths from the initial node are already longer than that, nothing that is discovered later can make those paths shorter. But if there are negative-cost edges somewhere, then a later discovery can make a path shorter, so it may be that a shorter path exists which Dijkstra will not discover.
If only the edges that connect to the initial node may have negative costs, then you still have problem, because the shortest path might involve revisiting the initial node to take advantage of the negative costs, something Dijkstra cannot do.
If you impose another rule that a node may not be visited more than once, then Dijkstra's algorithm works. Notice that in Dijkstra's algorithm, the initial node is given an initial distance of zero. If you give it some other initial distance, the algorithm will still find the shortest path-- but all of the distances will be off by that same amount. (If you want the real distance at the end, you must subtract the value you put in.)
So take your graph, call it A, find the smallest cost of any edge connected to the initial node, call it k which will be negative in this case).
Make a new graph B which you get by subtracting k from the cost of each edge connected to the initial node. Note that all of these costs are now non-negative. So Dijkstra works on B. Also note that the shortest path in B is also the shortest path in A.
Assign the initial node of B the distance k, then run Dijkstra (this will give the same path as running with an initial distance of zero). Compare this to running Dijkstra naively on A: once you leave the initial node everything's the same in the two graphs. The distances are the same, the decisions are the same, the two will produce the same path. And in the case of A the distace will be correct, since it started at zero.
Counter-example:
Graph G = (V, E), with vertices V = {A, B}, edges E = {(A, B), (B, A)} and weight function w(A, B) = -2, w(B, A) = +1.
There's a negative weight cycle, hence minimum distances are undefined (even using A as initial node).
Dijkstra's algorithm doesn't produce correct answer for graph with negative edge weights (even if graph doesn't have any negative weight cycle). For e.g. it computes incorrect shortest path value between (A, C) for following graph with source vertex A,
A -> B : 6
A -> C : 5
B -> D : 2
B -> E : 1
D -> E : -5
E -> C : -2

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