When trying to install Pillow using PIP, I get this include error:
μ ~: pip install pillow
...
libImaging/TiffDecode.h:10:10: fatal error: 'tiffio.h' file not found
#include <tiffio.h>
^
1 error generated.
error: command 'cc' failed with exit status 1
Does anyone know how to resolve this? I'm on OS X 10.9 and have previously been able to build Pillow on this computer.
Update: Note that I have tiffio.h on my machine at /usr/local/include/tiffio.h. After setting that directory to the C include path, I am able to successfully compile Pillow.
μ ~: C_INCLUDE_PATH=/usr/local/include
μ ~: pip install pillow
Downloading/unpacking pillow
...
Successfully installed pillow
Cleaning up...
Is this how it's supposed to be done, or is there something wrong with my machine or the installation package?
I faced the same issue and got it solved by installing libtiff using homebrew:
brew install libtiff
Related
I'm trying to install geopandas on my M1 mac and I'm running into errors
I tried to pip install all the dependencies individually but where I'm tripping up is in the install of pyproj.
I installed PROJ using brew install proj and that worked fine
When I try to pip install pyproj, I get the follow error
Building wheels for collected packages: pyproj
Building wheel for pyproj (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for pyproj (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [12 lines of output]
PROJ_DIR is set, using existing PROJ installation..
running bdist_wheel
running build
running build_py
running build_ext
building 'pyproj._geod' extension
pyproj/_geod.c:704:10: fatal error: 'geodesic.h' file not found
#include "geodesic.h"
^~~~~~~~~~~~
1 error generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for pyproj
Failed to build pyproj
ERROR: Could not build wheels for pyproj, which is required to install pyproject.toml-based projects
Any help would be much appreciated
At the moment, installing geopandas on M1 macs can be achieved via conda or pip+homebrew.
GeoPandas itself is written in pure Python, so there is no issue running that on any architecture. However, it depends on other libraries that are written in other languages (C, C++) that need to be compiled specifically for M1 chips. While you could compile it yourself, I am not going to cover this option as it is not user friendly.
There are three possible sources of required libraries - pip wheels, conda-forge, and Homebrew.
When a Python package requires C dependency, it can create wheels with the dependency compiled for each system and chip architecture. See for example pygeos - https://pypi.org/project/pygeos/#files. What you need is *macosx_11_0_arm64.whl . If your package doesn't offer it, you have to find another way of installing than pip. Since GeoPandas requires shapely and fiona (among others) that do not have these wheels, you should look elsewhere - either on conda-forge or Homebrew. Below are both options tested as of today.
Conda and conda-forge way (recommended)
Conda-forge currently has all packages geopandas needs
Install M1 version of miniforge or mambaforge. It can be downloaded from here - https://github.com/conda-forge/miniforge.
conda install -c conda-forge geopandas pygeos
Note: if you install x86 (Intel) version of conda, it will run under Rosetta2 and install all packages using x86 architecture, meaning that everything will run under emulation. Try to avoid that.
Pip and Homebrew way
Homebrew can install C libraries compiled for M1. Python packages will find and use them.
Using an environment with Python 3.9
Install shapely:
brew install geos
export DYLD_LIBRARY_PATH=/opt/homebrew/opt/geos/lib/
pip install shapely
DYLD_LIBRARY_PATH is needed for shapely to find GEOS installation.
Install fiona:
brew install gdal
pip install fiona
Install pyproj:
brew install proj
pip install pyproj
Install geopandas and pygeos for speedups:
pip install pygeos
pip install geopandas
Note that this is a copy&paste of my own explanation given in https://github.com/geopandas/geopandas/issues/1816#issuecomment-1003093329.
Related https://github.com/pyproj4/pyproj/issues/1027
I was stuck with the same problem, I also tried setting the environment values for PROJ_DIR, PROJ_LIBDIR, PROJ_INCDIR but perhaps setting the values is causing the error, so closed the terminal and tried again and was able to install correctly
I'm getting this error when I'm running the following command to install tensorflow.
python3 -m pip install tensorflow-macos
ERROR: Failed building wheel for h5py
Failed to build h5py
ERROR: Could not build wheels for h5py, which is required to install pyproject.toml-based projects
I tired to install this wheel manually, from the official link (https://pypi.org/project/h5py/#files), it got installed properly but I'm still getting the same error.
I'm facing the above issue in Mac Book M1 chip.
The official doc to use brew install.
$ brew install hdf5
If the above command gives you rosetta 2 issue, then run:-
arch -arm64 brew install hdf5
Once, the h5py installation is done, run following 2 commands:-
$ export HDF5_DIR=/opt/homebrew/Cellar/hdf5/1.12.0_4 OR export HDF5_DIR=/opt/homebrew/opt/hdf5 (if hdf5 is installed in the "/opt/homebrew/opt/hdf5" location, you have to check it out first)
$ pip install --no-binary=h5py h5py
Note:- in the first command "1.12.0_4" is the version of hdfc installed in my system, you have to change it according to yours.
If you are getting the aforementioned error implies you must be using poetry.
Finally run:-
poetry install
We are running the above command, In case poetry wants to update anything.
Once we run poetry install, it might update existing libraries or download new libraries.
So we have to update poetry.lock file as well.
poetry lock
After installing hdf5 try "export HDF5_DIR=/opt/homebrew/opt/hdf5"
Ref: https://github.com/h5py/h5py/issues/2035#issuecomment-1028226141
This works for me:
Install brew (https://brew.sh/)
brew install hdf5
export HDF5_DIR=$(brew --prefix hdf5) (as #sgt pepper said)
pip install --no-binary=h5py h5py
I am trying to install pygobject for python 2.7 in pycharm for the purpose of using gstreamer. However I am having problems installing it. While in the virtual environment, if I use
pip install pygobject
Then the build fails and gives me this error
gi/gimodule.c:25:10: fatal error: 'glib-object.h' file not found
#include <glib-object.h>
^~~~~~~~~~~~~~~
1 error generated.
error: command 'cc' failed with exit status 1
full error log here
I know for a fact that glib exists on my system from searching for it with
find /usr -name glib-object.h
but for some reason the install can't find it. Do I have to link it in somehow/how do I go about doing this?
Also I know I can more successfully use this library with python3 but that caused some weird system errors that can apparently be resolved by using 2.7 so I am just exploring that at the moment.
With virtual environments it's recommended installing PyGObject with pipenv instead of pip.
Install pipenv with either MacPorts, HomeBrew or pipsi:
MacPorts
port install pipenv
HomeBrew
brew install pipenv
pipsi
curl https://raw.githubusercontent.com/mitsuhiko/pipsi/master/get-pipsi.py | python3 - --src=git+https://github.com/mitsuhiko/pipsi.git\#egg=pipsi
echo 'export PATH="$HOME/.local/bin:$PATH"' >> ~/.bashrc
source ~/.bashrc
pipsi install pew
pipsi install pipenv
Once you've got pipenv installed then you should be able to add the package to your virtual environment:
pipenv install pygobject
↳ PyGObject : Creating A Development Environment
so I am trying to install kivy on my mac.From their instructions page, I am on step 2, and have to enter the command $ USE_OSX_FRAMEWORKS=0 pip install kivy. However, when I put this in terminal, I get the error error: command '/usr/bin/clang' failed with exit status 1, and as a result Failed building wheel for kivy. Does anyone know how to address this issue?
Just had this issue, and was able to fix it following the directions on the kivy mac OS X install page, with one modification as follows:
$ brew install pkg-config sdl2 sdl2_image sdl2_ttf sdl2_mixer gstreamer
$ pip3 install Cython==0.25.2
$ pip3 install kivy
pip3 is my reference to pip for Python 3.6 as I have two different versions of python on my system. May just be pip install for you.
Hope this helps!
I'm trying to install Numpy on an OSX 10.6.8 using Homebrew, but I'm getting the following error message:
MacBook-Pro:~ eb$ brew install numpy --with-openblasWarning: Xcode not installed
Most stuff needs Xcode to build: http://developer.apple.com/xcode/
==> Installing numpy dependency: tbb
==> Downloading http://threadingbuildingblocks.org/uploads/77/189/4.1%20update%2
######################################################################## 100,0%
Error: SHA1 mismatch
Expected: 072333068fa278635582846eaaa22d51c0100e09
Actual: 08140939b4a84052734dc3589c59af7560c01990
Archive: /Library/Caches/Homebrew/tbb-4.1u1.tgz
(To retry an incomplete download, remove the file above.)
I've removed the file named above several times using the following command:
rm -rf/Library/Caches/Homebrew/tbb-4.1u1.tgz
But the same message keeps appearing. Can someone point me to the best way of fixing this? Thank you!
I would recommends using Macports and spyder. The install went off no problem and then there is a nice environment with numpy, scipy and matplotlib all working for OsX