I'm using CentOS Linux release 6.0 (Final) but unable install given package
1) rpm -ivh oracle-instantclient11.2-devel-11.2.0.1.0-1.x86_64.rpm
Whenever i install package,I got following error
error: Failed dependencies:
oracle-instantclient11.2-basic >= 11.2.0.1.0 is needed by oracle-instantclient11.2-devel-11.2.0.3.0-1.x86_64
2)rpm -ivh oracle-instantclient11.2-devel-11.2.0.1.0-1.x86_64.rpm
Whenever i install package,I got following error
error: Failed dependencies:
oracle-instantclient11.2-basic >= 11.2.0.1.0 is needed by oracle-instantclient11.2-devel-11.2.0.1.0-1.x86_64
From the instant client information page:
Installation Instructions
Installation Steps:
Download the appropriate Instant Client packages for your platform. All installations REQUIRE the Basic or Basic Lite package.
...
That is referring to the .zip version, but the same will apply to the .rpm version.
So you need to get and install the oracle-instantclient11.2-basic-11.2.0.1.0-1.x86_64.rpm or oracle-instantclient11.2-basiclite-11.2.0.1.0-1.x86_64.rpm (Basic Lite: Smaller version of the Basic, with only English error messages and Unicode, ASCII, and Western European character set support) before you can install the -devel- package on top.
Kind of curious that you're installing the 11.2.0.1 version (or 11.2.0.3 from your first error message, despite the command you showed) when more recent versions are available. I assume you're getting your .rpm files from the download site. I'd get the 11.2.0.4 version, if not the 12.0.0.1 version, unless you have a specific reason to stick to an older one. I would get the same version for basic and devel though, despite the message suggesting they don't have to match. So oracle-instantclient11.2-basic-11.2.0.3.0-1.x86_64.rpm (or basiclite) if you're sticking with oracle-instantclient11.2-devel-11.2.0.3.0-1.x86_64.rpm.
Related
I need a C compiler on my s390, which runs RHEL 7.6. When I do "yum list | grep gcc", I have the following:
libgcc.s390x 4.8.5-36.el7
compat-gcc-44.s390x 4.4.7-8.el7
compat-gcc-44-c++.s390x 4.4.7-8.el7
gcc.s390x 4.8.5-16.el7
gcc-c++.s390x 4.8.5-16.el7
gcc-gfortran.s390x 4.8.5-16.el7
gcc-objc.s390x 4.8.5-16.el7
gcc-objc++.s390x 4.8.5-16.el7
libgcc.s390 4.8.5-16.el7
I then do: yum install gcc.s390x and I obtain the following error:
Error: Package: glibc-2.17-196.el7.s390
Requires: glibc-common = 2.17-196.el7
Installed: glibc-common-2.17-260.el7_6.3.s390x (#rhel-7-for-system-z-rpms)
glibc-common = 2.17-260.el7_6.3
Available: glibc-common-2.17-196.el7.s390x
glibc-common = 2.17-196.el7
What I read from this is that s390x package is installed but the one needed is the one that does not have the s390 extension.
How can I get around this ? I pulling gcc directly from git but when I do a configure the message says that a compiler needs to be installed.
Any help would be much appreciated. Thanks - C
This output line
Available: glibc-common-2.17-196.el7.s390x
shows that the configured repositories only contain glibc versions up to RHSA-2017:1916. This means that you have configured repositories for Red Hat Enterprise Linux 7.4 (and not even Extended Update Support). However, someone at one point upgraded glibc to a package version from Red Hat Enterprise Linux 7.6.
Installing GCC needs additional glibc components, and these have to match the already-installed version. Since the 7.6 packages are not available from the configured repositories, installation fails with a dependency error.
If you need assistance with subscription management, you should file a support ticket.
I was installing nvidia-drivers on Centos 6.10 which included a --skip-broken flag and may have broken yum. Whenever I ran yum commands this error pops up.
There was a problem importing one of the Python modules
required to run yum. The error leading to this problem was:
/lib64/libc.so.6: version `GLIBC_2.14' not found (required by /lib64/libgcc_s.so.1)
Please install a package which provides this module, or
verify that the module is installed correctly.
It's possible that the above module doesn't match the
current version of Python, which is:
2.6.6 (r266:84292, Jun 20 2019, 14:14:55)
[GCC 4.4.7 20120313 (Red Hat 4.4.7-23)]
If you cannot solve this problem yourself, please go to
the yum faq at:
http://yum.baseurl.org/wiki/Faq
I stumbled upon this thread which talks about installing the missing GLIBC version, but I ran into this error in step 8 ../configure --prefix=/opt/glibc-2.14
checking for forced unwind support... no
configure: error: forced unwind support is required
Which then took me to this forum thread that states I should install libunwind via yum. Which was my original problem, thus leaving me at an impasse. What should I do?
You need to reinstall GCC, or more precisely the libgcc package. Something overwrote /lib64/libgcc_s.so.1 with an incompatible version. You should be able to download the libgcc RPM package from a mirror, and then run:
# rpm --reinstall libgcc-4.4.7-23.el6.x86_64.rpm
This should still work because RPM itself does not depend on libgcc_s.
In general, if you need newer versions of these core system libraries (glibc, libstdc++, libgcc_s), you need to upgrade the entire operating system. Even if you manage to replace them in a consistent fashion, you are running something that isn't very close to the original operating system anymore. At that point, it is more prudent to upgrade, because that will give you a consistent system that has been tested by many others.
I'm trying to install the package "Tax4Fun" but keep failing.
I've tried 2 different ways:
install.packages("devtools")
devtools::install_url("http://tax4fun.gobics.de/Tax4Fun/Tax4Fun_0.3.1.tar.gz")
library(Tax4Fun)
The error that I get is:
ERROR: dependency 'biom' is not available for package 'Tax4Fun'
I've also tried installing biom directly
BiocManager::install("biom")
which does not work either
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'biom'
Installation path not writeable, unable to update packages: boot, foreign, KernSmooth,
mgcv, nlme, survival
Warning message:
package ‘biom’ is not available (for R version 3.6.1)
The other way I've tried to install Tax4Fun directly is
BiocManager::install("Tax4Fun")
I get the following error code:
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'Tax4Fun'
Installation path not writeable, unable to update packages: boot, foreign, KernSmooth,
mgcv, nlme, survival
Warning message:
package ‘Tax4Fun’ is not available (for R version 3.6.1)
Please help :)
You need to install it by downloading the packages from source (http://tax4fun.gobics.de). Then it depends whether you are running on Linux/Mac or Windows.
From the command line, you navigate to the folder containing the .tar.gz downloaded package. Then you should install it using:
R CMD INSTALL Tax4Fun_0.3.1.tar.gz
But dependancies are not installed by default. So you need to install dependancies manually, Qiimer and Biom, which are both deprecated on Cran. You install them using the same command, after you have downloaded the packages from the Cran archives.
Before that, you need to also install their dependancies in R:
install.packages("pheatmap")
install.packages("RJSONIO")
Then you should be able to proceed as mentioned above: install Qiimer and Biom from the command line first. Then Tax4Fun from the command line too.
If you are running on Windows you should have quite the same issues, but the installation of the different packages and dependancies is different. You can have a look at the readme at http://tax4fun.gobics.de
I have been trying to install obspy and have been running into a lot of problems. I want to install obspy which has a dependency on pyproj. But apparently obspy only works with pyproj 1.9.5.1, which I tried installing using pip (pip3 install pyproj==1.9.5.1), but only got the errors like-
_proj.c:7488:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
Digging deeper I found that it might be a Cython problem, and installing pyproj directly from github might help, because it would apparently make Cython recompile all the necessary files. Something along the lines of -
pip3 install git+https://github.com/jswhit/pyproj.git
However this one gives the error -
ERROR: Minimum supported proj version is 6.2.0, installed version is 5.2.0.
I di try installing a higher version of libproj-dev (sudo apt install libproj-dev=6.2.0) however it shows that there is no candidate for 6.2.0. I tried downloading the deb file and installing from that using -
sudo apt-get install ~/Downloads/libproj-dev_6.2.0-1_amd64.deb
which just leads to the error -
The following packages have unmet dependencies:
libproj-dev : Depends: libproj15 (= 6.2.0-1) but it is not installable
E: Unable to correct problems, you have held broken packages.
But I think this is not the right way to install for me anyway, since I need a specific version. Hence I tried installing directly from the tarball of the release -
pip3 install https://github.com/pyproj4/pyproj/archive/v1.9.5.1rel.tar.gz
Which leads to the first error I had, evidently due to Cython.
With errors on everything I tried to do to fix this, I am not sure what even is relevant to my problem now.
Any help is appreciated, and if this site is not the correct place for this question, please help me migrate it to its proper destination.
I am on Ubuntu 18.10.
The problem is, that Cython-generated c-files don't work for Python-3.7 if generated with Cython versions up to 0.27.3 (at least): The setup.py of pyproj (at least in the version 1.9.5.1) doesn't regenerate the_proj.c, which is generated with Cython 0.23.2 and thus the installation cannot succeed.
You have the following options:
stay on Python3.6 where everything works out of the box.
regenerate _proj.c with a current Cython-version.
For the second option:
download and unzip your prefered version from https://github.com/pyproj4/pyproj/releases/tag/v1.9.5.1rel and switch to the created folder pyproj-1.9.5.1rel.
check, that the cython-version is >=0.27.3. via cython --version.
regenerate the _proj.c file via cython -3 _proj.pyx (_proj.pyx looks like Python3-code, but also language_level=2 (i.e. cython -2 _proj.pyx) will probably work.
install running pip install .
pyproj 1.9.5.1 was release at Jan 7, 2016. At that time, the latest version Python was 3.5. In my tests. pyproj 1.9.5.1 failed to be installed on Python 3.7.4, but succeeded on Python 3.5.7.
You need to create a environment with Python 3.5 by pyenv or conda.
References
pyproj 1.9.5.1 release
Python release history
I am installing Oracle 11g on the my system RHEL7.2 64bit,But in this step,I can not continue to install it,Because I can not find a file on my system,It is 'libgmp.so.3'.
So,like the picture,I can not install anything else.Because I had installed a higher level 'gmp' on my system.It is useless when I make a softlink to a higher level file.
What can I do?
try
yum clean all
this is will clear the yum cache .
Try first install mpfr-2.4.1-6.el6.x86_64.rpm
See http://www.oracle.com/technetwork/articles/servers-storage-admin/ginnydbinstallonlinux-488779.html. (It is for Oracle Linux 6.0, but it describes your problem)
# yum install oracle-rdbms-server-11gR2-preinstall
........
---> Package mpfr.x86_64 0:2.4.1-6.el6 will be installed
--> Running transaction check
---> Package kernel-uek-headers.x86_64 0:2.6.32-300.32.1.el6uek will be installed
---> Package ppl.x86_64 0:0.10.2-11.el6 will be installed
Also see brief installation guide how to install libraries https://oracle-base.com/articles/11g/oracle-db-11gr2-installation-on-oracle-linux-7
And of course big installation guide if nothing has helped https://docs.oracle.com/cd/E11882_01/install.112/e24326/toc.htm#BHCFACHG