Performance tuning MongoDB query/update? - performance

So I have a MongoDB instance where I am trying to update data in one collection with data from another collection. The two collections are participants with about 180k documents and questions with about 95k documents.
Documents in participants typically look something like this:
{
"_id" : ObjectId("52f90b8bbab16dd8594b82b4"),
"answers" : [
{
"_id" : ObjectId("52f90b8bbab16dd8594b82b9"),
"question_id" : 2081,
"sub_id" : null,
"values" : [
"Yes"
]
},
{
"_id" : ObjectId("52f90b8bbab16dd8594b82b8"),
"question_id" : 2082,
"sub_id" : 123,
"values" : [
"Would prefer to go alone"
]
},
{
"_id" : ObjectId("52f90b8bbab16dd8594b82b7"),
"question_id" : 2082,
"sub_id" : 456,
"values" : [
"Yes"
]
}
],
"created" : ISODate("2012-03-01T17:40:21Z"),
"email" : "anonymous",
"id" : 65,
"survey" : ObjectId("52f41d579af1ff4221399a7b"),
"survey_id" : 374
}
I am using the query below to perform the update:
db.participants.ensureIndex({"answers.question_id": 1, "answers.sub_id": 1});
print("created index for answer arrays!")
db.questions.find().forEach(function(doc){
db.participants.update(
{
"answers.question_id": doc.id,
"answers.sub_id": doc.sub_id
},
{
$set:
{
"answers.$.question": doc._id
}
},
false,
true
);
});
db.participants.dropIndex({"answers.question_id": 1, "answers.sub_id": 1});
But this takes about 20 minutes to run. I was hoping that adding the index would help with the performance, but it is still pretty slow. Is this index setup correctly considering that I am indexing fields in an array of objects? Can anyone see anything that I am doing that would cause the slowness? Suggestions on where to start looking to improve the performance of this query?

I think you need to consider what you are actually doing here in order to understand why the index is not helping and indeed why this operation takes so long.
The first part of the answer is explained by what you are doing here:
db.questions.find()
Now that part alone basically says that you are asking to retrieve every document in your questions collection. So we can see what you are trying to do is exactly that, as you want to update that content into your participants collection, particularly the document _id for the "question". But here, by definition of getting all documents, no index will be used.
So what you are doing is looping every document in the questions, then asking with your update operation to match the participants record with data from the "question". And what that means is you are pulling "over the wire" all of your 95K documents and sending back "over the wire" your update operation, 95K times. This is not happening on the server and there is network traffic between your application and your MongoDB.
The index itself is not going to do much other than improve the search of each participants record, which is better than scanning and you should be getting the match. But that's not the part that taking the time, its the fetching of the questions that will be the largest issue. Also note that if you were updating
So if it's possible to run your update process on a machine that is as close as possible in networking terms to the MongoDB server then that is going to be your best performance improvement. You could also wind back your Write Concern if you want to be a little daring and/or can live with checking the integrity in another opertation, and that will reduce your network traffic and waiting for a response to the update (which is actually happening) if you put it in "fire and forget" mode.
Also see the guide if you are not sure of the concepts:
http://docs.mongodb.org/manual/core/write-concern/

In case anyone is interested I was able to take the run time of this update query from 20 minutes down to about a minute and a half by using projection when selecting the questions documents. Since I am only using the _id, id and sub_id fields I was able to do the following:
db.questions.find({},{_id: 1, id: 1, sub_id: 1}).forEach(function(doc){
....
Which drastically improved performance. Hope this helps someone!

Related

Elastic Search - Sorting & Filtering on nested Documents

I am working on an E-Commerce application. Catalog Data is being served by Elastic Search.
I have document's for Product which is already indexed in Elastic Search.
Document Looks something like this (Excluded few fields for the purpose of better readability):
{
"title" : "Product Name",
"volume" : "200gm",
"brand" : {
"brand_code" : XXXX,
"brand_name" : "Brand Name"
},
"#timestamp" : "2021-08-26T08:08:11.319Z",
"store" : [
{
"physical_unit" : 0,
"default_price" : 115.0,
"_id" : "1234_111",
"product_code" : "1234",
"warehouse_code" : 111,
"available_unit" : 100
}
],
"category" : {
"category_code" : 987,
"category_name" : "CategoryName",
"category_url_link" : "CategoryName",
"super_category_name" : "SuperCategoryName",
"parent_category_name" : "ParentCategoryName"
}
}
store object in the above document is the one where ES Query will look for price and to decide if item is in stock or Out Of Stock.
I would like to add more child objects to store (Basically data from multiple inventory). This can go up to more than 150 child objects for each product.
Eventually, A product document will look something like this with multiple inventory's data mapped to a particular document.
{
"title" : "Product Name",
"volume" : "200gm",
"brand" : {
"brand_code" : XXXX,
"brand_name" : "Brand Name"
},
"#timestamp" : "2021-08-26T08:08:11.319Z",
"store" : [
{
"physical_unit" : 0,
"default_price" : 115.0,
"_id" : "1234_111",
"product_code" : "1234",
"warehouse_code" : 111,
"available_unit" : 100
},
{
"physical_unit" : 0,
"default_price" : 125.0,
"_id" : "1234_112",
"product_code" : "1234",
"warehouse_code" : 112,
"available_unit" : 100
},
{
"physical_unit" : 0,
"default_price" : 105.0,
"_id" : "1234_113",
"product_code" : "1234",
"warehouse_code" : 113,
"available_unit" : 100
}
Upto N no of stores
],
"category" : {
"category_code" : 987,
"category_name" : "CategoryName",
"category_url_link" : "CategoryName",
"super_category_name" : "SuperCategoryName",
"parent_category_name" : "ParentCategoryName"
}
}
Functional Requirement :
For any product, we should show lowest price across all warehouse.
For EX: If a particular product has 50 store mapped to it, Elastic Search query should look into the nested object and get the value which is lowest in all 50 stores if item is available.
Performance should not be degraded.
Challenges :
If we start storing those many stores for each product, data will go considerably high. Will that be a problem ?
What would be the efficient way to extract the lowest price from nested document?
How would facets work within nested document ? Like if i apply price range filter ES picks up the data which was not showed earlier. (It might pick the data from other store which matches the range)
We are using template to query ES and the Version of the Elastic Search is 6.0.
Thanks in Advance!!
First there are improvements to nested document search in version 7.x that are worth the upgrade.
As for version 6.x, there are a lot of factors there that I could not give you a concrete answer. It also seems you may not be understanding the way that nested documents work, they are not relational.
In particular when you say that each product might have 50 stores mapped to it that sounds like you are implying a relationship, which will not exist with a nested document. However, the values from those 50 stores would be stored within an index nested under the parent document. Having 50 stores under a product or category does not sound concerning.
ElasticSearch has not really talked in terms of facets since the introduction of the aggregation framework. Its not that they dont exist, just not how they are discussed.
So lets try this. ElasticSearch optimizes its search and query through a divide and conquer mechanism. The data is spread across several shards, a configurable number, and each shard is responsible for reviewing its own data. Further, those shards can be distributed across many machines so that there are many cpus and lots of memory for the search. So growing the data doesn't matter if you are willing to grow the cluster, as it is possible to maintain a situation where each machine is doing the same amount of work as it was doing before.
Unlike a relational database, filters search terms allow Elastic to drastically reduce the data that it is looking at and a larger number of filters will improve performance where on a relational database performance declines.
Now back to nested documents. They are stored as a separate index, but instead of mapping the results to the nested doc, the results map to the parent doc id. So you're nested docs arent exactly in the same index as the rest of the document, though they are not truly separate either. But that does mean that the nested documents should have minimal impact the performance of the queries against the parent documents. But if your data size grows beyond the capacity of your current system you will still need to increase its size.
As to how you would query, you would use Elastic aggregations. These will allow you to calculate your "facet" counts and identify the best prices. The Elastic aggregations are very powerful and very fast. There are caveats that are well documented, but in general they will work as you expect.
In version 6.x query string queries cannot access the search criteria in a nested document, and a complex query must be used.
To recap
Functional Requirement :
For any product, we should show lowest price across all warehouse.
For EX: If a particular product has 50 store mapped to it,
ElasticSearch query should look into the nested object and get the
value which is lowest in all 50 stores if item is available.
Yes a nested aggregation will do this.
Performance should not be degraded.
Performance will continue to depend on the ratio of the size of the data to the overall cluster size.
Challenges :
If we start storing those many stores for each product, data will go considerably high. Will that be a problem ?
No this should not be a problem
What would be the efficient way to extract the lowest price from nested document?
Elastic Aggregations
How would facets work within nested document ? Like if i apply price range filter ES picks up the data which was not showed earlier. (It might pick the data from other store which matches the range)
Yes filtering can work with Aggregations very well. The aggregation will be based on the filtered data. In fact you could have an aggregation based on just minimum price, and in the same query then have an aggregation using your price ranges, which will give you the count of documents that have a store within that price range, and you could have a sub aggregation showing the stores under each price range.
We are using template to query ES and the Version of the Elastic Search is 6.0. Thanks in Advance!!
I know nothing about template. The ElasticSearch API is so dead simple I do not know why anyone uses additional tools on top of the API, they just add weight, and increase complexity and make key features not available because the wrapper author did not pass through the feature.

Elasticsearch: count rows in a table

I have a big table (15000 x 2000 entries). In this table, I need to count rows with certain properties like "all rows, that have a 1 or 2 in column 5 and a 0 in column 6". I will call this type of operation a count operation. For my use case, the count operation needs to be very fast, as I executing several hundreds of those count operations.
I tried to do so with elastic search, but the performance seems to be very bad (like 10 seconds for 180 count operations). I was wondering, if I am building my queries the wrong way, or if maybe Elasticsearch is the wrong technology to do so?
My queries are all of the same form. I create them with java, so it's kind of hard to post here, how they do look like but I do my best to explain
I build each single coun operation as a BoolQuery. For the example above it would be a query that looks similar to this (don't blame me if it's wrong, I cannot copy the correct query, as it is built in java):
"query": {
"bool" : {
"must" : [
"should" : [
{ "column 5" : "1" },
{ "column 5" : "2" }
],
"should" : [
{ "column 6" : "0" }
],
"minimum_should_match" : 1
],
"boost" : 1.0
}
}
The many bool queries of this form are then grouped into a MultiSearchRequest. I use the option "fetchSource = false" to prevent Elasticsearch from loading the entities themselves.
Please tell me, if you need any further information, or if it is unclear, what I am trying to do!
I just fixed the problem myself. For all with a similar question, here is how:
I changed the SearchSourceBuilder, so that it now uses a ValueCountAggregator. This one counts the values and allows me to set the SearchSourceBuilder.size() to 0. In this way I get rid of the hits themselves and retrieve only the aggregation values.
Requests that took 4 seconds before are now executed in less than 100ms.

Elasticsearch Multi Index Query and Filter

I have 2 indexes, one that stores data about an event and one that stores the availability of that event. I am trying to create a single query that gets events by a query but only returns ones that are available, and I am having difficulty doing so.
The events index stores
{
"id" : "152ce52d-e975-4ebd-849a-0a12f535e644",
"createdAt" : 1.5519999143126902E12,
"description" : "A very not so concise description",
"geoHash" : "dnh00x6x5",
"name" : "a name",
...etc...
}
The availability index stores availability like so:
{
"eventId" : "152ce52d-e975-4ebd-849a-0a12f535e644",
"maxGuests" : 8,
"availability" : {
"lte" : "2019-10-18T22:15:00.000Z",
"gte" : "2019-10-18T02:30:00.000Z"
}
}
I am trying to create a query like below, but what I can't figure out is how to filter by listings that meet the criteria in the events index AND are available in the availability index.
GET events,availability/_search
{
"size": 5,
"from": 0,
"_source": [
"id"
],
"query": {
"bool": {
"must": [
{
"geo_distance": {
"distance": "25mi",
"geoHash": {
"lat": 34.0389,
"lon": -84.3826
}
}
}
],
"should": [],
"filter":[
{
"range" : {
"availability" : {
"gte" : "2019-10-31",
"lte" : "2020-11-01",
"relation" : "within"
}
}
}
]
}
}
}
--
The reason I want to only do one query is that the client is expecting a certain specified number of events. If I filter out the unavailable events after I get the event data then I am likely to be left with fewer events than the client expected and would need to do yet another search to fill the gap.
Also, of course, I could merge the two indices so that the event also stores the availability info, but I originally set them up this way because the availability info may have hundreds or thousands of entries per event.
What you want to accomplish is an equivalent of a foreign key of SQL (join). There is no way to have exactly what you want, meaning to filter documents from index A by querying an index B. Your options are:
As you've mentioned solve it on application level (although this causes other problems for you, so it's not a solution).
Merge the data in one index and have duplicated event informatin. Although it seems expensive, the duplication of data in a NoSQL database is to be expected. If you need a relational model then maybe you should use a SQL solution.
Use parent/child (join datatype). The problem here is that you will need to have the data in the same index overall. Moreover, parent and child will be stored in the same shard as well.
One approach to this (a bit more complex though) that I believe would work for you is to use the nested datatype, which actually is a more compact approach for the solution number 2 (combine your data in one index, but save root information only once). Make events be at the root and availability appear as nested. When you want to add one availability you can use the update api, and when you query, you can search by the root fields and by the nested. If you need to retrieve specific availability entries for an event you can use inner hits
What you are trying to do (multi-index search) will not join your data automatically, it will not work. Elasticsearch doesn't work that way, and the relational model is not suited for this product.
One last thing, it's a good thing to plan ahead, but it's a bad thing to try to optimize early on.
The real problem is that programmers have spent far too much time worrying about efficiency in the wrong places and at the wrong times; premature optimization is the root of all evil (or at least most of it) in programming.
An interesting read that summarizes the above

ES keeps returning every document

I recently inherited an ES instance and ensured I read an entire book on ES cover-to-cover before posting this, however I'm afraid I'm unable to get even simple examples to work.
I have an index on our staging environment which exhibits behavior where every document is returned no matter what - I have a similar index on our QA environment which works like I would expect it to. For example I am running the following query against http://staging:9200/people_alias/_search?explain:
{ "query" :
{ "filtered" :
{ "query" : { "match_all" : {} },
"filter" : { "term" : { "_id" : "34414405382" } } } } }
What I noticed on this staging environment is the score of every document is 1 and it is returning EVERY document in my index no matter what value I specify ...using ?explain I see the following:
_explanation: {
value: 1
description: ConstantScore(*:*), product of:
details: [
{
value: 1, description: boost
}, { value: 1, description: queryNorm } ] }
On my QA environment, which correctly returns only one record I observe for ?explain:
_explanation: {
value: 1
description: ConstantScore(cache(_uid:person#34414405382)), product of:
details: [ {
value: 1,
description: boost
}, {
value: 1,
description: queryNorm
}
]
}
The mappings are almost identical on both indices - the only difference is I removed the manual field-level boost values on some fields as I read field-level boosting is not recommended in favor of query-time boosting, however this should not affect the behavior of filtering on the document ID (right?)
Is there any clue I can glean from the differences in the explain output or should I post the index mappings? Are there any server-level settings I should consider checking? It doesn't matter what query I use on Staging, I can use match queries and exact match lookups on other fields and Staging just keeps returning every result with Score 1.0
I feel like I'm doing something very glaringly and obviously wrong on my Staging environment. Could someone please explain the presence of ConstantScore, boost and queryNorm? I thought from looking at examples in other literature I would see things like term frequency etc.
EDIT: I am issuing the query from Elastic Search Head plugin
In your HEAD plugin, you need to use POST in order to send the query in the payload, otherwise the _search endpoint is hit without any constraints.
In your browser, if you open the developer tools and look at the networking tab, you'll see that nothing is sent in the payload when using GET.
It's a common mistake people often do. Some HTTP clients (like curl) do send a payload using GET, but others (like /head/) don't. Sense will warn you if you use GET instead of POST when sending a payload and will automatically force POST instead of GET.
So to sum it up, it's best to always use POST whenever you wish to send some payload to your servers, so you don't have to care about the behavior of the HTTP client you're using.

How do I troubleshoot and improve this slow running query?

I'm looking to fine tune a string search query that I am using on Mongo. In the SQL Server world, I'd like to believe I have a decent understanding of how indexes work and how to build proper indexes. I tried giving it a shot with Mongo, but, I don't believe that I'm not going about it the right way.
My collection has roughly 4.3 million documents. The document structure looks like this:
{
"_id":{
"$oid":"527027456239d1212c07a621"
},
"ReleaseId":2451,
"Status":"Accepted",
"Title":"Hard Rhythmic Motions",
"Country":"US",
"MasterId":"35976",
"Images":[
{
"Type":"primary",
"URI":"http://api.discogs.com/image/R-2451-1117047026.jpg",
"URI150":"http://api.discogs.com/image/R-150-2451-1117047026.jpg",
"Height":307,
"Width":307
},
{
"Type":"secondary",
"URI":"http://api.discogs.com/image/R-2451-1117047033.jpg",
"URI150":"http://api.discogs.com/image/R-150-2451-1117047033.jpg",
"Height":307,
"Width":307
}
],
"Artists":[
{
"_id":2894,
"Name":"DJ Hyperactive"
}
],
"Formats":[
{
"Name":null,
"Quantity":1
}
],
"Genres":[
"Electronic"
],
"Styles":[
"Hardcore",
"Acid"
]
}
I am executing a case insensitive search on one of the top-level document properties and on one of the nested document properties:
db.releases.find({$or: [{Title: new RegExp('.*mozart.*',"i")},{'Artists.Name': new RegExp('.*mozart.*',"i")}]})
I tried creating an index; when I execute .getIndexes() I can see the index I created:
{
"v" : 1,
"key" : {
"Title" : 1,
"Artists.Name" : 1
},
"ns" : "discogs.releases",
"name" : "Title_1_Artists.Name_1"
}
At this point I thought that I would be all set. However, the query ends up taking between 28 and 32 seconds to execute. I tried calling .explain() to get a little more insight:
{
"cursor" : "BasicCursor",
"isMultiKey" : false,
"n" : 4098,
"nscannedObjects" : 4292400,
"nscanned" : 4292400,
"nscannedObjectsAllPlans" : 4292400,
"nscannedAllPlans" : 4292400,
"scanAndOrder" : false,
"indexOnly" : false,
"nYields" : 29,
"nChunkSkips" : 0,
"millis" : 29958,
"indexBounds" : {
},
"server" : "lambic:27017"
}
From my limited knowledge of Mongo, this looks like a table scan which is why the query isn't performing very well. However, I don't know how to make this query better! I would expect that the index that I created to cover this query, but, that must not be the case.
Now, the last thing I want to point out is that this is certainly not on the most robust server. The hardware specs (including CPU and RAM) are very limited. However, if my analysis is correct and I'm doing a table scan, there must be some performance improvements I can make on the Mongo side.
A fulltext index is probably what you need. You could also parse the document before inserting it, and put the keywords in an array inside the document and index this array.
Thanks everyone for the responses. I wanted to follow up on this question since it had a few votes and to make sure anyone who stumbles upon this page in the future knows what I ended up doing.
The fulltext index sounds like a great solution. However, because this is only a small side-project of mine I'm not willing to throw more hardware at the architecture (the fulltext index requires a good amount of disk space for 4 million records).
What I ended up doing is flattening my data structures to make them easier to query and removed the wildcard search so that my indexes on that new structure can actually be used. By doing this I can achieve an indexOnly query (although the performance still isn't amazing, I find it to be adequate given my weak hardware stack).

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